These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 932 fasta sequence [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTCCAGCCCACGCAACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATCGCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCGTCATCGTCTTCGTCTTCGCCTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCGCACGAGATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTTGCACAAGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCACGGTGGAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCACCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGACGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACACAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGGCGAGAGCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCACCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCATCTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAACTAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCCAATATGGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAAATGCAAAATACGTTCCCACGAAGTAATACGAGAATAT] [+] EMBL OSC242 [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTCCAGCCCACGCAACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATCGCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCGTCATCGTCTTCGTCTTCGCCTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCGCACGAGATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTTGCACAAGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCA ] [+] EMBL AK111065 [ AACCCTCGAACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCCGCATCGCCGCCGTCGCTGGCCCTGCAGCTGCAGGTGGCCAGCCTCGTCATCGTCTTCGTCTTCGCCTTCTCCTCCGCCATCACGCCTACACGAGCTGATCATGTAGAAGGACACATGTCGCACGAGATGTTTGGCTACG AAAACGACGCGAC GGGGCCGGCGAAGT GGGGCTCGC TGCACAA GGAGTGGGCCGTCTGCGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCACGGTGGAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCACCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGACGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACACAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGGCGAGAGCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCACCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCATCTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAACTAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCCAATATGGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAAATGCAAAATACGTTCCCACGAAGTAATACGAGAATAT] consensusID : consensus_5924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGCGATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCGCCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCCGCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCGGNCTCCGTCGTCGTCCCCGATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC] [+] EMBL OSC241 [CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGCGATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCGCCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCCGCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCGGNCTCCGTCGTCGTCCCCGATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5924#0 CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCATCANCGACACCGCTTC--C 58 consensus_5924#1 CCGTCGCGTCCACCTCTCCAGTCCAGTCCGCCACCGCGCCACCATGAGGATCGACGCGGC 60 ***************************************** ** * ** * * consensus_5924#0 AGCCCACGCAACCCTCGA-ACAATGGCGAGGGCTCGCCGGGGACGACAAAACGCCGCC-G 116 consensus_5924#1 GATCCTCGCCGCNGTCGTCGCCTTCCTCCTCCCCCTCCGCCTTCTCTCCCTCCTCGCCCG 120 ** *** * *** * * * * *** * * **** * consensus_5924#0 CATCGCCGCCGTCGCTGGCCCTGCAGNTGCAGGTGGCCAGNCTCG-TCATCGTCTTCGTC 175 consensus_5924#1 CCTCAGCCTCACCGGCAGCGCGANGACCTCCGCCGTCCCTGCGCGGCCTTCGCGCTCTCC 180 * ** * * ** ** * * * * ** * ** * *** ** * consensus_5924#0 TTCGCCTTCTCCTCCGCCATCACGGCTACACGAGCTGATCATGTAGAAGGACACATNTCG 235 consensus_5924#1 GCCGCGCTCCTCGCCGCCATCTTCGCCCTCCNGNGCGACCACGCCAGGGAGTGCGCCGCG 240 *** ** * ******** ** * ** ** * * * ** consensus_5924#0 CACGAGATGTTTGGCTACGAAAAACGACGNGACGGGGGCCGGCGAAGTGGGGGNTCGCTT 295 consensus_5924#1 GNCTCCGTCGTCGTCCCCG----ATGACGGAGAGGGTGCCTTCCGCGGCGAGGTGC---- 292 * * * * * ** * **** *** *** * * * ** * consensus_5924#0 GCACAAGGGAGTNGGCCGTCTTNGGCGACGGCAAGAAGCAGTCGCCGATCGACATCACCA 355 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CGGTGGAGCCGCAGAAAGTGAAGGAGCCGCTGATGCAAGCCTACAAGGCCGGCGCCACCA 415 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CCATTCAGAACCGAGGCCACGACTACATGCTGAAATGGAAAGATGGGAATAGCAAGCTGA 475 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CGGTCCAAGGGAAGGAGTACACGCTCAAGCAGGTGCACTGGCATGAACCCTCCGAGCACA 535 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CAATCAACGGAACCAGGTTCGACGCAGAGATGCACATGGTTCACGAGGACCCCAGCATGG 595 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CGAGAGCCGTCGTCTCTGTGCTGTTGAGCACCAAAGCAGGCCAACCCAACGCAGTGCTCA 655 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CCGAGGTAGTAACAACGACGTGCCTCACCGTTCACCTGAAATGGTTCGTTTCCATTTCAT 715 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 CTCCCACGGAGAGGCCAAGAAATGGAAATGAACACATCTAGATGAATTGTGAATACTAAC 775 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 TAGAAAGTACTTGATGTCAAATAGTGATCTTTAGTACTGGTAAGTGGTACTGTATAACCC 835 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 AATATGGTACATGGAAGATTGGAAGTGCTAGCTAGCACGGTAGCACCCATGTCCCCACAA 895 consensus_5924#1 ------------------------------------------------------------ consensus_5924#0 ATGCAAAATACGTTCCCACGAAGTAATACGAGAATAT 932 consensus_5924#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||