These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACACCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCCAACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAGCGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGTGAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGGGCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTCTCTGAATTCATAGTGGTTTTTTT] [+] EMBL AK108022 [TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACACCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCCAACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAGCGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGTGAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGGGCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCCGCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGGTTGGGCAGCCAGTGCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAGCAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTCTTCTCTGAATTCATAGTGGTTTTTTT] consensusID : consensus_5929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence [GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGANTAGCGCCTAGCTTAATTTCTTTTTCTTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAAATATTTTTANTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAACTGTGTATNATTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL OSC1051 [GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGANTAGCGCCTAGCTTAATTTCTTTTTCTTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAAATATTT ] [+] EMBL AU097541 [ AGCACCGGCANCCATGCCTCGCCGTGGCANCCGCACCTCTCGTGCATCACCGAGGANCCCTGAGTANCGCCTAGCTTAANTTCTTTTTCTTCTCTGAANTCACAGTGGTTTTTTTGCCTGGTGTGTAAANTTCCTCTGGTGCCCGGTAAATATTTTTANTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAACTGTGTATNATTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5929#0 TCTCTTCGTTTCAATCTAGCGACCGAACGCGAGAAGTCGAGAAGAGAAGCGGCAGCGACA 60 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 CCGGCGCCGCCCACCACCACTGCATCGCCGCCGCGGCGTGCCTCACCGGTCCCGCCCCCC 120 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 AACAGCTGCGCCGCCGCCTCTCCCCGGTGAGTCTCCTCCCCAGCCGCCGCCTATCCTCAG 180 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 CGAAACCCTAGGCACCGAGCCGGCCGCATCGACGCGTACGGCCGTGCTGTGTCCGCCGGT 240 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 GAGGTGCTGGCGGCGCACCCCAACCACGTGCTTAGCCGGCAGTGCTCGTCGCAGCAGGGG 300 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 GCGATGGGCCGGATACACATCGTGTCGCCGGAGTCGAAGCTGGAGTGCGGCGAGATCTAC 360 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 TTCCTCATCCCGGCCGCCTCCGTCCCCGACGCCAAGAGAAGGACGAGCACCGGCGGCGCC 420 consensus_5929#1 ------------------------------------------------------------ consensus_5929#0 GCAGGCCACGGGCACCACGTCCGCAGCAAGTCGGAGGGCAACGCCGCCGTCGCCGATTGG 480 consensus_5929#1 -----GCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGG 55 * ******************************** ***** ** ******* ** consensus_5929#0 TTGGGCAGCCAGT---GCAGCGCGTCGCCGGAGACGACAAGGATGATGAGGGTGCAGAAG 537 consensus_5929#1 TTGGGCAGCCCGGCCGGCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAG 115 ********** * ********************** ************* ******* consensus_5929#0 CAACACCACCACCAACACCGGCGGCGCATGAGCACCGGGAGCCATGCCTCGCCGTGGCAG 597 consensus_5929#1 CAGCAGCACCA---ACACCGGCGGCGCATGAGCACCGGCAGCCATGCCTCGCCGTGGCAG 172 ** ** ***** ************************ ********************* consensus_5929#0 CCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCATTTTTTTTTCTTCTC 657 consensus_5929#1 CCGCACCTCTCGTGCATCACCGAGGATCCCTGANTAGCGCCTA-GCTTAATTTCTTTTTC 231 ******************** ***** ****** ** * ** *** ** ** consensus_5929#0 TTCTCTGAATTCATAGTGGTTTTTTT---------------------------------- 683 consensus_5929#1 TTCTCTGAATTCACAGTGGTTTTTTTGCCTGGTGTGTAAATTTCCTCTGGTGCCCGGTAA 291 ************* ************ consensus_5929#0 ------------------------------------------------------------ consensus_5929#1 ATATTTTTANTCNCCTTTTGTGTTANTGATGTGCCGNTTTTNCATTCTGAAANCNACAAC 351 consensus_5929#0 ------------------------------------------------------------ consensus_5929#1 TGTGTATNATTTTCGAANCACAAANCGACTTCCATTCTATCTTCTTGTATCTTCGAAAAA 411 consensus_5929#0 ----------------- consensus_5929#1 AAAAAAAAAAAAAAAAA 428 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||