cluster # 5933

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Oryza sativa
cluster # 5933 cluster # 5933 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5933#0 length = 622 sequences # 1

consensus_5933#1 length = 571 sequences # 1
consensus_5933#2 length = 443 sequences # 1

consensusID : consensus_5933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [GACGAATTCCAGGGCCATGGCGTTGCGCGGTGCCGCCTCCCGCTGCTTCCTCGCCGCCGTCCGCGGCCGCGCCGCCTCCGCGTCGCGCGTCCGCGCGGCTCCAGCTCCACTCCCCTCCGCTCCACCACGCCGGGCTGCCTTCTCGCCGTTTGCCGCTGCCGCTGCGAGGCCGATGGCGGCGGCGGCGATGATGGGGTCGCCGGCGGCGGTGGCGGCGAGGCTGACCGGGCACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGAAATGGAGATGATGCATGACGCCTGGGAGGCCAGTTTAAAGAATAGTGAAGGTAATTGAGGCTTGAAAACATTACTGTTCCTTTTGCTGCTAGGATGCGAGGTTTACAGAAGCTTTGTGGCTCCTCTGTTTTTTCCTGCCTAATGGGAAGTTAAAAGAAACTCCCTATTTTTAGTTTCCTAGTCCCGTAGTGAAAACAACAGTCAACATGATTACTACATTAATAATCCTCTGTTAACCGGCTACTCGTTATGTTCTGTAAAAGTTGCCGCCATGCTTTCATGTTCTTTTTACTGCATAACGATGCAACCTGTTTCCTAATGCGGATCATTTGAAAATCGTGAGAAGTG]

[+] EMBL AK107931             [GACGAATTCCAGGGCCATGGCGTTGCGCGGTGCCGCCTCCCGCTGCTTCCTCGCCGCCGTCCGCGGCCGCGCCGCCTCCGCGTCGCGCGTCCGCGCGGCTCCAGCTCCACTCCCCTCCGCTCCACCACGCCGGGCTGCCTTCTCGCCGTTTGCCGCTGCCGCTGCGAGGCCGATGGCGGCGGCGGCGATGATGGGGTCGCCGGCGGCGGTGGCGGCGAGGCTGACCGGGCACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGAAATGGAGATGATGCATGACGCCTGGGAGGCCAGTTTAAAGAATAGTGAAGGTAATTGAGGCTTGAAAACATTACTGTTCCTTTTGCTGCTAGGATGCGAGGTTTACAGAAGCTTTGTGGCTCCTCTGTTTTTTCCTGCCTAATGGGAAGTTAAAAGAAACTCCCTATTTTTAGTTTCCTAGTCCCGTAGTGAAAACAACAGTCAACATGATTACTACATTAATAATCCTCTGTTAACCGGCTACTCGTTATGTTCTGTAAAAGTTGCCGCCATGCTTTCATGTTCTTTTTACTGCATAACGATGCAACCTGTTTCCTAATGCGGATCATTTGAAAATCGTGAGAAGTG]




>consensus_5933#0
GACGAATTCCAGGGCCATGGCGTTGCGCGGTGCCGCCTCCCGCTGCTTCCTCGCCGCCGT
CCGCGGCCGCGCCGCCTCCGCGTCGCGCGTCCGCGCGGCTCCAGCTCCACTCCCCTCCGC
TCCACCACGCCGGGCTGCCTTCTCGCCGTTTGCCGCTGCCGCTGCGAGGCCGATGGCGGC
GGCGGCGATGATGGGGTCGCCGGCGGCGGTGGCGGCGAGGCTGACCGGGCACCCGTCGGC
GAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGAAATGGAGATGATGCATGACGCCTGGG
AGGCCAGTTTAAAGAATAGTGAAGGTAATTGAGGCTTGAAAACATTACTGTTCCTTTTGC
TGCTAGGATGCGAGGTTTACAGAAGCTTTGTGGCTCCTCTGTTTTTTCCTGCCTAATGGG
AAGTTAAAAGAAACTCCCTATTTTTAGTTTCCTAGTCCCGTAGTGAAAACAACAGTCAAC
ATGATTACTACATTAATAATCCTCTGTTAACCGGCTACTCGTTATGTTCTGTAAAAGTTG
CCGCCATGCTTTCATGTTCTTTTTACTGCATAACGATGCAACCTGTTTCCTAATGCGGAT
CATTTGAAAATCGTGAGAAGTG

consensusID : consensus_5933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [CACCCCCGCCGCCGACGAACTCCCCCCTAGCCATGGCGTCGCGCGGTGCCGCTTCCCGCTCCTTCCTCGCCGCCGTCCGTGGCCGCGCCGCCTCGTCGGCGCCGCGCATCCGCGCGGCTCCGCTCCCCTCCGCCCCACGCCGCCGCGTCCCCTCCTCCGCCTTCTCGCCATTTGCCGCCGCGAGGCCGATGTCGGCGATGATGGGGTCGCCGGCGGCGATGGCGGTGAGGCTGACCGGGCACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGTAATTAGGCTTGAACAGTGCTGTCCCGACTCTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCTCGTTTTTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTCCCTATTATTACTTCACCTGTCACCTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGTTACCCGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTTTCATGGGAATGAATGTTCTTGTTTTGCAAAGTTTAATATGTTC]

[+] EMBL AK109300             [CACCCCCGCCGCCGACGAACTCCCCCCTAGCCATGGCGTCGCGCGGTGCCGCTTCCCGCTCCTTCCTCGCCGCCGTCCGTGGCCGCGCCGCCTCGTCGGCGCCGCGCATCCGCGCGGCTCCGCTCCCCTCCGCCCCACGCCGCCGCGTCCCCTCCTCCGCCTTCTCGCCATTTGCCGCCGCGAGGCCGATGTCGGCGATGATGGGGTCGCCGGCGGCGATGGCGGTGAGGCTGACCGGGCACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGTAATTAGGCTTGAACAGTGCTGTCCCGACTCTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCTCGTTTTTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTCCCTATTATTACTTCACCTGTCACCTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGTTACCCGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTTTCATGGGAATGAATGTTCTTGTTTTGCAAAGTTTAATATGTTC]




>consensus_5933#1
CACCCCCGCCGCCGACGAACTCCCCCCTAGCCATGGCGTCGCGCGGTGCCGCTTCCCGCT
CCTTCCTCGCCGCCGTCCGTGGCCGCGCCGCCTCGTCGGCGCCGCGCATCCGCGCGGCTC
CGCTCCCCTCCGCCCCACGCCGCCGCGTCCCCTCCTCCGCCTTCTCGCCATTTGCCGCCG
CGAGGCCGATGTCGGCGATGATGGGGTCGCCGGCGGCGATGGCGGTGAGGCTGACCGGGC
ACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGTAATTAGGCTTGAACAG
TGCTGTCCCGACTCTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCTCG
TTTTTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTCCCTATTATTACTTCACCTGTCAC
CTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGTTACC
CGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTTTCATGGGAATGA
ATGTTCTTGTTTTGCAAAGTTTAATATGTTC

consensusID : consensus_5933#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TGTCGGCGATGATGGGGTCGCCGGCGGGATGTNCGGTNAGGCTGACCGGGCACCCGTCGGCGAGCGTGCGGGCGTACTGTNAGCTCTCCCAGGGTACCCACTTCTGCCGCACTTNTCAGGATCGCTAACAAGTAATTAGGCTTGAACAGTGCTGTCCCGACTCTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCTCGTTTTTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTNCCTATTATTACTTNACCTGTCACCTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGTTACCCGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTNTCATGGGAATNAATGTCCTTGTTTTGCAAAGTTTAATATGGTTCAGATTTCTGTGGNANNAAAAAN]

[+] EMBL OSC27351             [TGTCGGCGATGATGGGGTCGCCGGCGGGATGTNCGGTNAGGCTGACCGGGCACCCGTCGGCGAGCGTGCGGGCGTACTGTNAGCTCTCCCAGGGTACCCACTTCTGCCGCACTTNTCAGGATCGCTAACAAGTAATTAGGCTTGAACAGTGCTGTCCCGACTCTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCTCGTTTTTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTNCCTATTATTACTTNACCTGTCACCTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGTTACCCGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTNTCATGGGAATNAATGTCCTTGTTTTGCAAAGTTTAATATGGTTCAGATTTCTGTGGNANNAAAAAN]




>consensus_5933#2
TGTCGGCGATGATGGGGTCGCCGGCGGGATGTNCGGTNAGGCTGACCGGGCACCCGTCGG
CGAGCGTGCGGGCGTACTGTNAGCTCTCCCAGGGTACCCACTTCTGCCGCACTTNTCAGG
ATCGCTAACAAGTAATTAGGCTTGAACAGTGCTGTCCCGACTCTGTTAGGATGCAATTCT
TTTTAGGGTTACAGAAGCTCTCTGGCTCGTTTTTCCCCCTGCCTAATGGGAGGTTGTAAG
GAACTNCCTATTATTACTTNACCTGTCACCTAGTGAAAATAACAGTCAACATGATTTTTA
CATTAATAATCCCCTGTTAACCAGTTACCCGTTATGTTCATTTGGTCGTGAAATATTGGA
TGAAGCATCATTCCTTNTCATGGGAATNAATGTCCTTGTTTTGCAAAGTTTAATATGGTT
CAGATTTCTGTGGNANNAAAAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5933#1      CACCCCCGCCGCCGACGAACTCCCCCCTAGCCATGGCGTCGCGCGGTGCCGCTTCCCGCT 60
consensus_5933#2      ------------------------------------------------------------
consensus_5933#0      ----------------GACGAATTCCAGGGCCATGGCGTTGCGCGGTGCCGCCTCCCGCT 44
                                                                                  

consensus_5933#1      CCTTCCTCGCCGCCGTCCGTGGCCGCGCCGCCTCGTCGGCGC---CGCGCATCCGCGCGG 117
consensus_5933#2      ------------------------------------------------------------
consensus_5933#0      GCTTCCTCGCCGCCGTCCGCGGCCGCGCCGCCTCCGCGTCGCGCGTCCGCGCGGCTCCAG 104
                                                                                  

consensus_5933#1      CTCCGCTCCCCTCCGCCCCACGCCGCCGCGTCCCCTCCTCCGCCTTCTCGCCATTTGCCG 177
consensus_5933#2      ------------------------------------------------------------
consensus_5933#0      CTCCACTCCCCTCCGCTCCACCACGCCGGGCTGCCTTCTCGCCGTTTGCCGCTGCCGCTG 164
                                                                                  

consensus_5933#1      CCG---CGAGGCCGATGTCGGCGATGATGGGGTCGCCGGCGGCGATGGCGGTGAGGCTGA 234
consensus_5933#2      ---------------TGTCGGCGATGATGGGGTCGCCGGCGGGATGTNCGGTNAGGCTGA 45
consensus_5933#0      CGAGGCCGATGGCGGCGGCGGCGATGATGGGGTCGCCGGCGGCGGTGGCGGCGAGGCTGA 224
                                      * ************************      ***  *******

consensus_5933#1      CCGGGCACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGTA--------- 285
consensus_5933#2      CCGGGCACCCGTCGGCGAGCGTGCGGGCGTACTGTNAGCTCTCCCAGGGTACC------- 98
consensus_5933#0      CCGGGCACCCGTCGGCGAGCGTGCGGGCGTGCTGTGAGCTCTCCCAGGGAAATGGAGATG 284
                      ****************************** **** ************* *         

consensus_5933#1      --------------------------------------------ATTAGGCTTGAA--CA 299
consensus_5933#2      --------CACTTCTGCCGCACTTNTCAGGATCGCTAACAAGTAATTAGGCTTGAA--CA 148
consensus_5933#0      ATGCATGACGCCTGGGAGGCCAGTTTAAAGAATAGTGAAGGTAATTGAGGCTTGAAAACA 344
                                                                   * *********  **

consensus_5933#1      GTGCTGTCCCGACT-CTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCT 358
consensus_5933#2      GTGCTGTCCCGACT-CTGTTAGGATGCAATTCTTTTTAGGGTTACAGAAGCTCTCTGGCT 207
consensus_5933#0      TTACTGTTCCTTTTGCTGCTAGGATGCGA---------GGTTTACAGAAGCTTTGTGGCT 395
                       * **** **   * *** ******** *         ** *********** * *****

consensus_5933#1      CGTTT--TTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTCCCTATTATTACTTCACCTG 416
consensus_5933#2      CGTTT--TTCCCCCTGCCTAATGGGAGGTTGTAAGGAACTNCCTATTATTACTTNACCTG 265
consensus_5933#0      CCTCTGTTTTTTCCTGCCTAATGGGAAGTTAAAAGAAACTCCCTATTTTTAGTTTCCTAG 455
                      * * *  **   ************** ***  *** **** ****** *** **  *  *

consensus_5933#1      TCACCTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGT 476
consensus_5933#2      TCACCTAGTGAAAATAACAGTCAACATGATTTTTACATTAATAATCCCCTGTTAACCAGT 325
consensus_5933#0      TCCCGTAGTGAAAACAACAGTCAACATGATTACTACATTAATAATCCTCTGTTAACCGGC 515
                      ** * ********* ****************  ************** ********* * 

consensus_5933#1      TACCCGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTTTCATGGGA 536
consensus_5933#2      TACCCGTTATGTTCATTTGGTCGTGAAATATTGGATGAAGCATCATTCCTTNTCATGGGA 385
consensus_5933#0      TACTCGTTATGTTCTGTAAAAGTTGCCGCCATGCTTTCATGTTCTTTTTACTGCATAACG 575
                      *** **********  *      **      **  *  *   ** **      ***    

consensus_5933#1      ATGAATGTTCTTGTTTTGCAAAGTTTAATATGTTC----------------------- 571
consensus_5933#2      ATNAATGTCCTTGTTTTGCAAAGTTTAATATGGTTCAGATTTCTGTGGNANNAAAAAN 443
consensus_5933#0      ATGCA---ACCTGTTTCCTAATGCGGATCAT--TTGAAAATCGTGAGAAGTG------ 622
                      **  *    * *****   ** *   *  **  *