These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1824 fasta sequence [TACATATCTGTTCAGTACTTCTTCCAGGCAGTTGTTCTGTATCCTCTTCTTGTTGCAACAATTGTCTTGGCTGCTGTCTTTATAGTATTCACTCATCTGCCATCTGAATCCAGCACAAGGGTTTTGCCATGGGTGTTCTCTTTCTTGGTAGTTCTATTTCCAATCACATATCTTCTTGAAGGGCATCTAAGAGCTAAAAATTTTGTGGATGATGAGGAAGCAGAGAACTTCACCAACATGTTGGCTATAGAAGGGGCCAGAATGTCACTTTTGGGTCTATATGCTGCCATTTTCATGATTATTGCATTAGAAATTAAGTTTGAACTGGCTTTGCTATTGCGTGAGAAAGCTGCAGACAAAGGTGTAACACATGGTCCACCTGGTCGGAGTTCTGCCTTTCCACCAAAGGCAAGGCTACTTCAGCAGCGAAGAGCTCATGCTGCGCCAACTTTCACTATCAAGAGATTGGCAGCAGAAGCAGCTTGGATGCCTGCAATTGGCAACTTTTCAACTGTGCTGTGCTTCATCATCTGCCTTATTTCTCAACGTTACTCTTACCGGTGGCTCAAATCGTGCTATTTTCTTCCTGGCACCTATCCTTCTGCTCTTGAACCAGGATTCAGATATCATTGCAGGATTTGGTGACAGGCAACGTTACTTCCCTGTAACAATCTCCATTTCTGTTTATTTAGTATTGACAGCATTGTATCGTTTATGGGAGGAGACTTGGCCTGGCAGTGGCGGGTGGGCACTTGATATTGGGGGCCCAGGCTGGTTCTTTGCTGTGAAAAATGTTGCCCTTCTCATGATGACATTACCTAATCACATACTCTTCAATCGCTTCATGTGGGATTATGTCAGGCAGACAGATGCGAAGCTACTTCTGACGCTGCCCCTCAACTTGCCGTCAATTATAATGACAGACATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGTAAATCTTGTATGCCCTGCGTCAATGGTTGTGAATAAGAGTCTCCAGCTTCTGATGCTAATATTTCGGTGCTTGCTTGCAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGTCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGAGAAACAATGGTCAGTAGTCACCAGTTTTGCCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCTTTTGTTGTCCAAGTGACTAATTCTGAATGGCAATGTTCTCCACGGAGCTGTCTGGTTCTGTTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTATATGCTGAGGTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCAAAAAAACTTTTGATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTTCTTTGGTACTACATGAAGATTTGCTTCGTATTCGGAAGTGCACGAGTTTCTTCAGGTCGCAGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAACATTGTCTATGCAATTTTCCGCTTCAATGCATTT] [+] EMBL AK071810 [TACATATCTGTTCAGTACTTCTTCCAGGCAGTTGTTCTGTATCCTCTTCTTGTTGCAACAATTGTCTTGGCTGCTGTCTTTATAGTATTCACTCATCTGCCATCTGAATCCAGCACAAGGGTTTTGCCATGGGTGTTCTCTTTCTTGGTAGTTCTATTTCCAATCACATATCTTCTTGAAGGGCATCTAAGAGCTAAAAATTTTGTGGATGATGAGGAAGCAGAGAACTTCACCAACATGTTGGCTATAGAAGGGGCCAGAATGTCACTTTTGGGTCTATATGCTGCCATTTTCATGATTATTGCATTAGAAATTAAGTTTGAACTGGCTTTGCTATTGCGTGAGAAAGCTGCAGACAAAGGTGTAACACATGGTCCACCTGGTCGGAGTTCTGCCTTTCCACCAAAGGCAAGGCTACTTCAGCAGCGAAGAGCTCATGCTGCGCCAACTTTCACTATCAAGAGATTGGCAGCAGAAGCAGCTTGGATGCCTGCAATTGGCAACTTTTCAACTGTGCTGTGCTTCATCATCTGCCTTATTTCTCAACGTTACTCTTACCGGTGGCTCAAATCGTGCTATTTTCTTCCTGGCACCTATCCTTCTGCTCTTGAACCAGGATTCAGATATCATTGCAGGATTTGGTGACAGGCAACGTTACTTCCCTGTAACAATCTCCATTTCTGTTTATTTAGTATTGACAGCATTGTATCGTTTATGGGAGGAGACTTGGCCTGGCAGTGGCGGGTGGGCACTTGATATTGGGGGCCCAGGCTGGTTCTTTGCTGTGAAAAATGTTGCCCTTCTCATGATGACATTACCTAATCACATACTCTTCAATCGCTTCATGTGGGATTATGTCAGGCAGACAGATGCGAAGCTACTTCTGACGCTGCCCCTCAACTTGCCGTCAATTATAATGACAGACATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGTAAATCTTGTATGCCCTGCGTCAATGGTTGTGAATAAGAGTCTCCAGCTTCTGATGCTAATATTTCGGTGCTTGCTTGCAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGTCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGAGAAACAATGGTCAGTAGTCACCAGTTTTGCCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCTTTTGTTGTCCAAGTGACTAATTCTGAATGGCAATGTTCTCCACGGAGCTGTCTGGTTCTGTTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTATATGCTGAGGTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCAAAAAAACTTTTGATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTTCTTTGGTACTACATGAAGATTTGCTTCGTATTCGGAAGTGCACGAGTTTCTTCAGGTCGCAGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAACATTGTCTATGCAATTTTCCGCTTCAATGCATTT] consensusID : consensus_5935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 455 fasta sequence [TGCCGTCAATTATAATGACAGACAATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTTGTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAAA] [-] EMBL CF308087 [TGCCGTCAATTATAATGACAGACAATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTTGTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAAA] [+] EMBL CF308088 [TGCCGTCAATTATAATGACAGAC ATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTTGTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5935#0 TACATATCTGTTCAGTACTTCTTCCAGGCAGTTGTTCTGTATCCTCTTCTTGTTGCAACA 60 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 ATTGTCTTGGCTGCTGTCTTTATAGTATTCACTCATCTGCCATCTGAATCCAGCACAAGG 120 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 GTTTTGCCATGGGTGTTCTCTTTCTTGGTAGTTCTATTTCCAATCACATATCTTCTTGAA 180 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 GGGCATCTAAGAGCTAAAAATTTTGTGGATGATGAGGAAGCAGAGAACTTCACCAACATG 240 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 TTGGCTATAGAAGGGGCCAGAATGTCACTTTTGGGTCTATATGCTGCCATTTTCATGATT 300 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 ATTGCATTAGAAATTAAGTTTGAACTGGCTTTGCTATTGCGTGAGAAAGCTGCAGACAAA 360 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 GGTGTAACACATGGTCCACCTGGTCGGAGTTCTGCCTTTCCACCAAAGGCAAGGCTACTT 420 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 CAGCAGCGAAGAGCTCATGCTGCGCCAACTTTCACTATCAAGAGATTGGCAGCAGAAGCA 480 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 GCTTGGATGCCTGCAATTGGCAACTTTTCAACTGTGCTGTGCTTCATCATCTGCCTTATT 540 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 TCTCAACGTTACTCTTACCGGTGGCTCAAATCGTGCTATTTTCTTCCTGGCACCTATCCT 600 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 TCTGCTCTTGAACCAGGATTCAGATATCATTGCAGGATTTGGTGACAGGCAACGTTACTT 660 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 CCCTGTAACAATCTCCATTTCTGTTTATTTAGTATTGACAGCATTGTATCGTTTATGGGA 720 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 GGAGACTTGGCCTGGCAGTGGCGGGTGGGCACTTGATATTGGGGGCCCAGGCTGGTTCTT 780 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 TGCTGTGAAAAATGTTGCCCTTCTCATGATGACATTACCTAATCACATACTCTTCAATCG 840 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 CTTCATGTGGGATTATGTCAGGCAGACAGATGCGAAGCTACTTCTGACGCTGCCCCTCAA 900 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 CTTGCCGTCAATTATAATGACAGACA-TACTTACTGTGCGGGTACTAGGACTGTTAGGTG 959 consensus_5935#1 --TGCCGTCAATTATAATGACAGACAATACTTACTGTGCGGGTACTAGGACTGTTAGGTG 58 ************************ ********************************* consensus_5935#0 CTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAAT 1019 consensus_5935#1 CTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAAT 118 ************************************************************ consensus_5935#0 ACATTTAAACTAGGACATGCAACTTCTTTTGAGGTAAATCTTGTATGCCCTGCGTCAATG 1079 consensus_5935#1 ACATTTAAACTAGGACATGCAACTTCTTTTGAGG-------------------------- 152 ********************************** consensus_5935#0 GTTGTGAATAAGAGTCTCCAGCTTCTGATGCTAATATTTCGGTGCTTGCTTGCAGGCTTT 1139 consensus_5935#1 --------------------------------------------------------CTTT 156 **** consensus_5935#0 CAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGTCACATTTGTCTGGT 1199 consensus_5935#1 CAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGT 216 ********************************************* ************** consensus_5935#0 GAACTGTGAACAAAATTGCGCCTTGAAGTAGAGAAACAATGGTCAGTAGTCACCAGTTTT 1259 consensus_5935#1 GAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTT 276 ******************************* **************************** consensus_5935#0 GCCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACT 1319 consensus_5935#1 GTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACT 336 * ********************************************************** consensus_5935#0 CAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGT 1379 consensus_5935#1 CAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGT 396 ************************************************************ consensus_5935#0 CAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCT 1439 consensus_5935#1 CAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAAA- 455 ****************************************************** * consensus_5935#0 TTTGTTGTCCAAGTGACTAATTCTGAATGGCAATGTTCTCCACGGAGCTGTCTGGTTCTG 1499 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 TTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTATATGCTGAG 1559 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 GTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCA 1619 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 AAAAAACTTTTGATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTT 1679 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 CTTTGGTACTACATGAAGATTTGCTTCGTATTCGGAAGTGCACGAGTTTCTTCAGGTCGC 1739 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 AGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAACATTGTCTA 1799 consensus_5935#1 ------------------------------------------------------------ consensus_5935#0 TGCAATTTTCCGCTTCAATGCATTT 1824 consensus_5935#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||