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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1824 fasta sequence
[TACATATCTGTTCAGTACTTCTTCCAGGCAGTTGTTCTGTATCCTCTTCTTGTTGCAACAATTGTCTTGGCTGCTGTCTTTATAGTATTCACTCATCTGCCATCTGAATCCAGCACAAGGGTTTTGCCATGGGTGTTCTCTTTCTTGGTAGTTCTATTTCCAATCACATATCTTCTTGAAGGGCATCTAAGAGCTAAAAATTTTGTGGATGATGAGGAAGCAGAGAACTTCACCAACATGTTGGCTATAGAAGGGGCCAGAATGTCACTTTTGGGTCTATATGCTGCCATTTTCATGATTATTGCATTAGAAATTAAGTTTGAACTGGCTTTGCTATTGCGTGAGAAAGCTGCAGACAAAGGTGTAACACATGGTCCACCTGGTCGGAGTTCTGCCTTTCCACCAAAGGCAAGGCTACTTCAGCAGCGAAGAGCTCATGCTGCGCCAACTTTCACTATCAAGAGATTGGCAGCAGAAGCAGCTTGGATGCCTGCAATTGGCAACTTTTCAACTGTGCTGTGCTTCATCATCTGCCTTATTTCTCAACGTTACTCTTACCGGTGGCTCAAATCGTGCTATTTTCTTCCTGGCACCTATCCTTCTGCTCTTGAACCAGGATTCAGATATCATTGCAGGATTTGGTGACAGGCAACGTTACTTCCCTGTAACAATCTCCATTTCTGTTTATTTAGTATTGACAGCATTGTATCGTTTATGGGAGGAGACTTGGCCTGGCAGTGGCGGGTGGGCACTTGATATTGGGGGCCCAGGCTGGTTCTTTGCTGTGAAAAATGTTGCCCTTCTCATGATGACATTACCTAATCACATACTCTTCAATCGCTTCATGTGGGATTATGTCAGGCAGACAGATGCGAAGCTACTTCTGACGCTGCCCCTCAACTTGCCGTCAATTATAATGACAGACATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGTAAATCTTGTATGCCCTGCGTCAATGGTTGTGAATAAGAGTCTCCAGCTTCTGATGCTAATATTTCGGTGCTTGCTTGCAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGTCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGAGAAACAATGGTCAGTAGTCACCAGTTTTGCCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCTTTTGTTGTCCAAGTGACTAATTCTGAATGGCAATGTTCTCCACGGAGCTGTCTGGTTCTGTTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTATATGCTGAGGTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCAAAAAAACTTTTGATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTTCTTTGGTACTACATGAAGATTTGCTTCGTATTCGGAAGTGCACGAGTTTCTTCAGGTCGCAGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAACATTGTCTATGCAATTTTCCGCTTCAATGCATTT]
[+] EMBL AK071810 [TACATATCTGTTCAGTACTTCTTCCAGGCAGTTGTTCTGTATCCTCTTCTTGTTGCAACAATTGTCTTGGCTGCTGTCTTTATAGTATTCACTCATCTGCCATCTGAATCCAGCACAAGGGTTTTGCCATGGGTGTTCTCTTTCTTGGTAGTTCTATTTCCAATCACATATCTTCTTGAAGGGCATCTAAGAGCTAAAAATTTTGTGGATGATGAGGAAGCAGAGAACTTCACCAACATGTTGGCTATAGAAGGGGCCAGAATGTCACTTTTGGGTCTATATGCTGCCATTTTCATGATTATTGCATTAGAAATTAAGTTTGAACTGGCTTTGCTATTGCGTGAGAAAGCTGCAGACAAAGGTGTAACACATGGTCCACCTGGTCGGAGTTCTGCCTTTCCACCAAAGGCAAGGCTACTTCAGCAGCGAAGAGCTCATGCTGCGCCAACTTTCACTATCAAGAGATTGGCAGCAGAAGCAGCTTGGATGCCTGCAATTGGCAACTTTTCAACTGTGCTGTGCTTCATCATCTGCCTTATTTCTCAACGTTACTCTTACCGGTGGCTCAAATCGTGCTATTTTCTTCCTGGCACCTATCCTTCTGCTCTTGAACCAGGATTCAGATATCATTGCAGGATTTGGTGACAGGCAACGTTACTTCCCTGTAACAATCTCCATTTCTGTTTATTTAGTATTGACAGCATTGTATCGTTTATGGGAGGAGACTTGGCCTGGCAGTGGCGGGTGGGCACTTGATATTGGGGGCCCAGGCTGGTTCTTTGCTGTGAAAAATGTTGCCCTTCTCATGATGACATTACCTAATCACATACTCTTCAATCGCTTCATGTGGGATTATGTCAGGCAGACAGATGCGAAGCTACTTCTGACGCTGCCCCTCAACTTGCCGTCAATTATAATGACAGACATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGTAAATCTTGTATGCCCTGCGTCAATGGTTGTGAATAAGAGTCTCCAGCTTCTGATGCTAATATTTCGGTGCTTGCTTGCAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGTCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGAGAAACAATGGTCAGTAGTCACCAGTTTTGCCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCTTTTGTTGTCCAAGTGACTAATTCTGAATGGCAATGTTCTCCACGGAGCTGTCTGGTTCTGTTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTATATGCTGAGGTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCAAAAAAACTTTTGATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTTCTTTGGTACTACATGAAGATTTGCTTCGTATTCGGAAGTGCACGAGTTTCTTCAGGTCGCAGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAACATTGTCTATGCAATTTTCCGCTTCAATGCATTT]
consensusID : consensus_5935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 455 fasta sequence
[TGCCGTCAATTATAATGACAGACAATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTTGTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAAA]
[-] EMBL CF308087 [TGCCGTCAATTATAATGACAGACAATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTTGTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAAA]
[+] EMBL CF308088 [TGCCGTCAATTATAATGACAGAC ATACTTACTGTGCGGGTACTAGGACTGTTAGGTGCTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAATACATTTAAACTAGGACATGCAACTTCTTTTGAGGCTTTCAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGTGAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTTGTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACTCAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGTCAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5935#0 TACATATCTGTTCAGTACTTCTTCCAGGCAGTTGTTCTGTATCCTCTTCTTGTTGCAACA 60
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 ATTGTCTTGGCTGCTGTCTTTATAGTATTCACTCATCTGCCATCTGAATCCAGCACAAGG 120
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 GTTTTGCCATGGGTGTTCTCTTTCTTGGTAGTTCTATTTCCAATCACATATCTTCTTGAA 180
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 GGGCATCTAAGAGCTAAAAATTTTGTGGATGATGAGGAAGCAGAGAACTTCACCAACATG 240
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 TTGGCTATAGAAGGGGCCAGAATGTCACTTTTGGGTCTATATGCTGCCATTTTCATGATT 300
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 ATTGCATTAGAAATTAAGTTTGAACTGGCTTTGCTATTGCGTGAGAAAGCTGCAGACAAA 360
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 GGTGTAACACATGGTCCACCTGGTCGGAGTTCTGCCTTTCCACCAAAGGCAAGGCTACTT 420
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 CAGCAGCGAAGAGCTCATGCTGCGCCAACTTTCACTATCAAGAGATTGGCAGCAGAAGCA 480
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 GCTTGGATGCCTGCAATTGGCAACTTTTCAACTGTGCTGTGCTTCATCATCTGCCTTATT 540
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 TCTCAACGTTACTCTTACCGGTGGCTCAAATCGTGCTATTTTCTTCCTGGCACCTATCCT 600
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 TCTGCTCTTGAACCAGGATTCAGATATCATTGCAGGATTTGGTGACAGGCAACGTTACTT 660
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 CCCTGTAACAATCTCCATTTCTGTTTATTTAGTATTGACAGCATTGTATCGTTTATGGGA 720
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 GGAGACTTGGCCTGGCAGTGGCGGGTGGGCACTTGATATTGGGGGCCCAGGCTGGTTCTT 780
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 TGCTGTGAAAAATGTTGCCCTTCTCATGATGACATTACCTAATCACATACTCTTCAATCG 840
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 CTTCATGTGGGATTATGTCAGGCAGACAGATGCGAAGCTACTTCTGACGCTGCCCCTCAA 900
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 CTTGCCGTCAATTATAATGACAGACA-TACTTACTGTGCGGGTACTAGGACTGTTAGGTG 959
consensus_5935#1 --TGCCGTCAATTATAATGACAGACAATACTTACTGTGCGGGTACTAGGACTGTTAGGTG 58
************************ *********************************
consensus_5935#0 CTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAAT 1019
consensus_5935#1 CTATTTATTCTCTATCACAGTATGTTATATCAAGGCGGATAAGACTTGCTGGGATGAAAT 118
************************************************************
consensus_5935#0 ACATTTAAACTAGGACATGCAACTTCTTTTGAGGTAAATCTTGTATGCCCTGCGTCAATG 1079
consensus_5935#1 ACATTTAAACTAGGACATGCAACTTCTTTTGAGG-------------------------- 152
**********************************
consensus_5935#0 GTTGTGAATAAGAGTCTCCAGCTTCTGATGCTAATATTTCGGTGCTTGCTTGCAGGCTTT 1139
consensus_5935#1 --------------------------------------------------------CTTT 156
****
consensus_5935#0 CAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGTCACATTTGTCTGGT 1199
consensus_5935#1 CAACCATATACGACGGCGATTGCTTTCAAAGGCTCTTGCTTGAAGCCACATTTGTCTGGT 216
********************************************* **************
consensus_5935#0 GAACTGTGAACAAAATTGCGCCTTGAAGTAGAGAAACAATGGTCAGTAGTCACCAGTTTT 1259
consensus_5935#1 GAACTGTGAACAAAATTGCGCCTTGAAGTAGGGAAACAATGGTCAGTAGTCACCAGTTTT 276
******************************* ****************************
consensus_5935#0 GCCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACT 1319
consensus_5935#1 GTCCTTAGATGATCTTTATACTGGTAACCTAAGGTGTTGTAGTATAAATGTTACTGAACT 336
* **********************************************************
consensus_5935#0 CAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGT 1379
consensus_5935#1 CAGCTCGTACAGCACATCACCTTGGGTCCTCAGAACCTGTGACCATACAGCATTTTGTGT 396
************************************************************
consensus_5935#0 CAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAGATTCT 1439
consensus_5935#1 CAGATACTTTCTTATATAAGCCTCACCAGAACTGACATATGCTGAGTCTGCATAAAAAA- 455
****************************************************** *
consensus_5935#0 TTTGTTGTCCAAGTGACTAATTCTGAATGGCAATGTTCTCCACGGAGCTGTCTGGTTCTG 1499
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 TTTGCTTCCTATATTAATACCTTTTCAATGTACATTATATATGATAGGGTATATGCTGAG 1559
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 GTCTTGGAGAGTTGGAGTGACTGATCTTCTGTTTGTCAGTAATCAGTCAGTTTTTTCCCA 1619
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 AAAAAACTTTTGATTTCATGAGATAGTTTTAGGATCTGCTTTCTGACTTGTGAGGCTGTT 1679
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 CTTTGGTACTACATGAAGATTTGCTTCGTATTCGGAAGTGCACGAGTTTCTTCAGGTCGC 1739
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 AGTGATAGACACGGGATATTCTAAACTACCATGTTTGATGTTTCATCAGAACATTGTCTA 1799
consensus_5935#1 ------------------------------------------------------------
consensus_5935#0 TGCAATTTTCCGCTTCAATGCATTT 1824
consensus_5935#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||