cluster # 5939

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Oryza sativa
cluster # 5939 cluster # 5939 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5939#0 length = 1666 sequences # 2

consensus_5939#1 length = 367 sequences # 1

consensusID : consensus_5939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1666
fasta sequence

                              [CCTAGCTGCCATCGATCCGAAACACAGGGGGCGGGGAGATCGATCAGAGCTGAGACGGCAAACCCCGGCATGGCTCCGCCTCCGCGGCTGCCGGCCGGCGCGGCCGCGCTGCTGCTGCTGCTCGCCGTGGCGTCCCGTGCGGCGGCGGACGGCAACGCCGTGGACGTCGGCGTGAACTGGGGCTCGCAGCTGTCGCACCCGCTGCTGCCCAAGTCGGTCGTGCAGATGCTCAAGGAGAACGGCATCCTGAAGGTGAAGCTGTTCGACGCCGACCCGTGGCCCGTCGGCGCGCTCGTCGACTCCGGCATCGA-GGTCATGCTCGGCATCCCCAACGACATGCTGGAGACGATGAACAGCTACGGGAACGCCCAGGATTGGGTCAAGGAGAACGTCACC-AGCTACGGCGACAAGCTCAAGATCAAGTATGTCGCCGTGGGGAACGAGCCGTTTCTCAAGGCGTACAACGGATCGTTCATGAAGACGACCTTCCCGGCGCTGAAGAACATCCAGAAGGCGCTGAACGAGGCCGGCGTCGGCGACAAGGTGAAGGCGACCGTCCCGCTGAACGCCGACGTGTACGTCTCGCCGGACAACAAGCCGTCCTCCGGCGCGTTCCGGCCGGACATCCAGGGCCTGATGACGGACATGGTGAAGTTCCTGCACGAGCACGGCTCGCCCTTCGTCGTCAACATCTACCCCTTCCTCAGCCTGTACCAGAGCGACGACTTCCCGTTCGAGTTCGCCTTCGTCGACGGCGGCAAGACCATCCAGGACAAGGGCGGCATCAGCTACTCCAACGTGTTCGACGCCAACTACGACACGCTGGTCACCGCGCTGAAGAAGGCCGGCGTCCCAAGCCTAAAGGTCGTCGTCGGCGAGGTCGGCTGGCCGACCGACGGCGACAAGAACGCCAACCTCAAGCTCGCGCGGCGCTACTACGACGGCCTCCTGAAGAAGCTCTCCAAGAAGGAAGGCACGCCGCTCCGGCCTGGCAAGATGGACGTCTACATGTTCGGCCTCTTCGACGAGGACATGAAGAGCATTCTCCCGGGCAACTTCGAGCGCCATTGGGGCATCTTCACCTACGACGGCAAGCCCAAGTTCCCGATGGACCTCTCCGGCCACGGCAACGACAAGCCGCTCGCCGGCGTGCCCGGCGTCGAGTACCTCCCGAAGCAGTGGTGCGTGTTCGACGACGGGGCCGAGGACAAGTCCAAGCTCCCCGGGAACATCCAGTACGCGTGCGCCAGCGGCGACTGCATGGCGCTCGGCTACGGGTGCTCCTGCAACGGCCTCGACGAGAAGAGCAACATCTCCTACGCCTTCAACATGTACTTCCAGATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGACGGCCTCGCCAAGATCACCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCGTCGGCTTATCCGCGGCGGCGTTGCTGGCATTGTTGATGGTGCTGGTGTGAGCATACCGTGTGAGACGGGTGGGTGGGTGCGTGCGTGGCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAGCGTTCAAATGTGTTGTGACATTTGCAAATTCTTCACGCCGGATGCATCCTTA]

[+] EMBL AK101025             [CCTAGCTGCCATCGATCCGAAACACAGGGGGCGGGGAGATCGATCAGAGCTGAGACGGCAAACCCCGGCATGGCTCCGCCTCCGCGGCTGCCGGCCGGCGCGGCCGCGCTGCTGCTGCTGCTCGCCGTGGCGTCCCGTGCGGCGGCGGACGGCAACGCCGTGGACGTCGGCGTGAACTGGGGCTCGCAGCTGTCGCACCCGCTGCTGCCCAAGTCGGTCGTGCAGATGCTCAAGGAGAACGGCATCCTGAAGGTGAAGCTGTTCGACGCCGACCCGTGGCCCGTCGGCGCGCTCGTCGACTCCGGCATCGA GGTCATGCTCGGCATCCCCAACGACATGCTGGAGACGATGAACAGCTACGGGAACGCCCAGGATTGGGTCAAGGAGAACGTCACC AGCTACGGCGACAAGCTCAAGATCAAGTATGTCGCCGTGGGGAACGAGCCGTTTCTCAAGGCGTACAACGGATCGTTCATGAAGACGACCTTCCCGGCGCTGAAGAACATCCAGAAGGCGCTGAACGAGGCCGGCGTCGGCGACAAGGTGAAGGCGACCGTCCCGCTGAACGCCGACGTGTACGTCTCGCCGGACAACAAGCCGTCCTCCGGCGCGTTCCGGCCGGACATCCAGGGCCTGATGACGGACATGGTGAAGTTCCTGCACGAGCACGGCTCGCCCTTCGTCGTCAACATCTACCCCTTCCTCAGCCTGTACCAGAGCGACGACTTCCCGTTCGAGTTCGCCTTCGTCGACGGCGGCAAGACCATCCAGGACAAGGGCGGCATCAGCTACTCCAACGTGTTCGACGCCAACTACGACACGCTGGTCACCGCGCTGAAGAAGGCCGGCGTCCCAAGCCTAAAGGTCGTCGTCGGCGAGGTCGGCTGGCCGACCGACGGCGACAAGAACGCCAACCTCAAGCTCGCGCGGCGCTACTACGACGGCCTCCTGAAGAAGCTCTCCAAGAAGGAAGGCACGCCGCTCCGGCCTGGCAAGATGGACGTCTACATGTTCGGCCTCTTCGACGAGGACATGAAGAGCATTCTCCCGGGCAACTTCGAGCGCCATTGGGGCATCTTCACCTACGACGGCAAGCCCAAGTTCCCGATGGACCTCTCCGGCCACGGCAACGACAAGCCGCTCGCCGGCGTGCCCGGCGTCGAGTACCTCCCGAAGCAGTGGTGCGTGTTCGACGACGGGGCCGAGGACAAGTCCAAGCTCCCCGGGAACATCCAGTACGCGTGCGCCAGCGGCGACTGCATGGCGCTCGGCTACGGGTGCTCCTGCAACGGCCTCGACGAGAAGAGCAACATCTCCTACGCCTTCAACATGTACTTCCAGATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGACGGCCTCGCCAAGATCACCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCGTCGGCTTATCCGCGGCGGCGTTGCTGGCATTGTTGATGGTGCTGGTGTGAGCATACCGTGTGAGACGGGTGGGTGGGTGCGTGCGTGGCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAGCGTTCAAATGTGTTGTGACATTTGCAAATTCTTCACGCCGGATGCATCCTTA]
[+] EMBL C72380               [                                                                                                                                                                                                                       GGTCGTGCAGATNCTCAAGGAGAACGGCATCCTGAAGGTGAAGCTGTTCGACGCCGACCCGTGGCCCGTCNGCGCGCTCGTCGACTCCGGCATCGAGGGTCATGCTCGGCATCCCCAACGACATGCTGGAGACGATGAACAGCTACGGGAACGCCCAGGATTGGGTCAAGGAGAACGTCACCAAGCTACGGCGACAAGCTCAAGATCAAGTATntnn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_5939#0
CCTAGCTGCCATCGATCCGAAACACAGGGGGCGGGGAGATCGATCAGAGCTGAGACGGCA
AACCCCGGCATGGCTCCGCCTCCGCGGCTGCCGGCCGGCGCGGCCGCGCTGCTGCTGCTG
CTCGCCGTGGCGTCCCGTGCGGCGGCGGACGGCAACGCCGTGGACGTCGGCGTGAACTGG
GGCTCGCAGCTGTCGCACCCGCTGCTGCCCAAGTCGGTCGTGCAGATGCTCAAGGAGAAC
GGCATCCTGAAGGTGAAGCTGTTCGACGCCGACCCGTGGCCCGTCGGCGCGCTCGTCGAC
TCCGGCATCGAGGTCATGCTCGGCATCCCCAACGACATGCTGGAGACGATGAACAGCTAC
GGGAACGCCCAGGATTGGGTCAAGGAGAACGTCACCAGCTACGGCGACAAGCTCAAGATC
AAGTATGTCGCCGTGGGGAACGAGCCGTTTCTCAAGGCGTACAACGGATCGTTCATGAAG
ACGACCTTCCCGGCGCTGAAGAACATCCAGAAGGCGCTGAACGAGGCCGGCGTCGGCGAC
AAGGTGAAGGCGACCGTCCCGCTGAACGCCGACGTGTACGTCTCGCCGGACAACAAGCCG
TCCTCCGGCGCGTTCCGGCCGGACATCCAGGGCCTGATGACGGACATGGTGAAGTTCCTG
CACGAGCACGGCTCGCCCTTCGTCGTCAACATCTACCCCTTCCTCAGCCTGTACCAGAGC
GACGACTTCCCGTTCGAGTTCGCCTTCGTCGACGGCGGCAAGACCATCCAGGACAAGGGC
GGCATCAGCTACTCCAACGTGTTCGACGCCAACTACGACACGCTGGTCACCGCGCTGAAG
AAGGCCGGCGTCCCAAGCCTAAAGGTCGTCGTCGGCGAGGTCGGCTGGCCGACCGACGGC
GACAAGAACGCCAACCTCAAGCTCGCGCGGCGCTACTACGACGGCCTCCTGAAGAAGCTC
TCCAAGAAGGAAGGCACGCCGCTCCGGCCTGGCAAGATGGACGTCTACATGTTCGGCCTC
TTCGACGAGGACATGAAGAGCATTCTCCCGGGCAACTTCGAGCGCCATTGGGGCATCTTC
ACCTACGACGGCAAGCCCAAGTTCCCGATGGACCTCTCCGGCCACGGCAACGACAAGCCG
CTCGCCGGCGTGCCCGGCGTCGAGTACCTCCCGAAGCAGTGGTGCGTGTTCGACGACGGG
GCCGAGGACAAGTCCAAGCTCCCCGGGAACATCCAGTACGCGTGCGCCAGCGGCGACTGC
ATGGCGCTCGGCTACGGGTGCTCCTGCAACGGCCTCGACGAGAAGAGCAACATCTCCTAC
GCCTTCAACATGTACTTCCAGATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGACGGC
CTCGCCAAGATCACCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATC
ATCAGCGCCGCCGCGCCGGCCGTCGCCGGCGTCGGCTTATCCGCGGCGGCGTTGCTGGCA
TTGTTGATGGTGCTGGTGTGAGCATACCGTGTGAGACGGGTGGGTGGGTGCGTGCGTGGC
GTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAGCGTTCA
AATGTGTTGTGACATTTGCAAATTCTTCACGCCGGATGCATCCTTA

consensusID : consensus_5939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [GCTCGGCTACGGGTGCTCTTGCAACGGCCTCGNCGAGAAGAGCAAACATNTCCTACGCCTTCAACATGTACTTCCAAAATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGNCGGCCTCGCCAAGATCNCCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCNTCGGCTTATCCGCGGCGGCGTTGCTGGCATTGTTGATGGTGCTGGTGTGAGCATACCGTGTTAAACGGGTGGGTGGGTGCGTGCGTGGCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182261             [GCTCGGCTACGGGTGCTCTTGCAACGGCCTCGNCGAGAAGAGCAAACATNTCCTACGCCTTCAACATGTACTTCCAAAATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGNCGGCCTCGCCAAGATCNCCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCNTCGGCTTATCCGCGGCGGCGTTGCTGGCATTGTTGATGGTGCTGGTGTGAGCATACCGTGTTAAACGGGTGGGTGGGTGCGTGCGTGGCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAAAAAAAAAAAAAAAAAA]




>consensus_5939#1
GCTCGGCTACGGGTGCTCTTGCAACGGCCTCGNCGAGAAGAGCAAACATNTCCTACGCCT
TCAACATGTACTTCCAAAATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGNCGGCCTC
GCCAAGATCNCCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATCATC
AGCGCCGCCGCGCCGGCCGTCGCCGGCNTCGGCTTATCCGCGGCGGCGTTGCTGGCATTG
TTGATGGTGCTGGTGTGAGCATACCGTGTTAAACGGGTGGGTGGGTGCGTGCGTGGCGTA
CATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAAAAAAAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5939#0      CCTAGCTGCCATCGATCCGAAACACAGGGGGCGGGGAGATCGATCAGAGCTGAGACGGCA 60
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      AACCCCGGCATGGCTCCGCCTCCGCGGCTGCCGGCCGGCGCGGCCGCGCTGCTGCTGCTG 120
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      CTCGCCGTGGCGTCCCGTGCGGCGGCGGACGGCAACGCCGTGGACGTCGGCGTGAACTGG 180
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GGCTCGCAGCTGTCGCACCCGCTGCTGCCCAAGTCGGTCGTGCAGATGCTCAAGGAGAAC 240
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GGCATCCTGAAGGTGAAGCTGTTCGACGCCGACCCGTGGCCCGTCGGCGCGCTCGTCGAC 300
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      TCCGGCATCGAGGTCATGCTCGGCATCCCCAACGACATGCTGGAGACGATGAACAGCTAC 360
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GGGAACGCCCAGGATTGGGTCAAGGAGAACGTCACCAGCTACGGCGACAAGCTCAAGATC 420
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      AAGTATGTCGCCGTGGGGAACGAGCCGTTTCTCAAGGCGTACAACGGATCGTTCATGAAG 480
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      ACGACCTTCCCGGCGCTGAAGAACATCCAGAAGGCGCTGAACGAGGCCGGCGTCGGCGAC 540
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      AAGGTGAAGGCGACCGTCCCGCTGAACGCCGACGTGTACGTCTCGCCGGACAACAAGCCG 600
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      TCCTCCGGCGCGTTCCGGCCGGACATCCAGGGCCTGATGACGGACATGGTGAAGTTCCTG 660
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      CACGAGCACGGCTCGCCCTTCGTCGTCAACATCTACCCCTTCCTCAGCCTGTACCAGAGC 720
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GACGACTTCCCGTTCGAGTTCGCCTTCGTCGACGGCGGCAAGACCATCCAGGACAAGGGC 780
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GGCATCAGCTACTCCAACGTGTTCGACGCCAACTACGACACGCTGGTCACCGCGCTGAAG 840
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      AAGGCCGGCGTCCCAAGCCTAAAGGTCGTCGTCGGCGAGGTCGGCTGGCCGACCGACGGC 900
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GACAAGAACGCCAACCTCAAGCTCGCGCGGCGCTACTACGACGGCCTCCTGAAGAAGCTC 960
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      TCCAAGAAGGAAGGCACGCCGCTCCGGCCTGGCAAGATGGACGTCTACATGTTCGGCCTC 1020
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      TTCGACGAGGACATGAAGAGCATTCTCCCGGGCAACTTCGAGCGCCATTGGGGCATCTTC 1080
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      ACCTACGACGGCAAGCCCAAGTTCCCGATGGACCTCTCCGGCCACGGCAACGACAAGCCG 1140
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      CTCGCCGGCGTGCCCGGCGTCGAGTACCTCCCGAAGCAGTGGTGCGTGTTCGACGACGGG 1200
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      GCCGAGGACAAGTCCAAGCTCCCCGGGAACATCCAGTACGCGTGCGCCAGCGGCGACTGC 1260
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      ATGGCGCTCGGCTACGGGTGCTCCTGCAACGGCCTCGACGAGAAGAGCAA-CATCTCCTA 1319
consensus_5939#1      -----GCTCGGCTACGGGTGCTCTTGCAACGGCCTCGNCGAGAAGAGCAAACATNTCCTA 55
                           ****************** ************* ************ *** *****

consensus_5939#0      CGCCTTCAACATGTACTTCCAGA-TGCAGGACCAGGACGTGCGCGCCTGCGACTTCGACG 1378
consensus_5939#1      CGCCTTCAACATGTACTTCCAAAATGCAGGACCAGGACGTGCGCGCCTGCGACTTCGNCG 115
                      ********************* * ********************************* **

consensus_5939#0      GCCTCGCCAAGATCACCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGA 1438
consensus_5939#1      GCCTCGCCAAGATCNCCACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGA 175
                      ************** *********************************************

consensus_5939#0      TCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCGTCGGCTTATCCGCGGCGGCGTTGCTGG 1498
consensus_5939#1      TCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCNTCGGCTTATCCGCGGCGGCGTTGCTGG 235
                      ******************************** ***************************

consensus_5939#0      CATTGTTGATGGTGCTGGTGTGAGCATACCGTGTGAGACGGGTGGGTGGGTGCGTGCGTG 1558
consensus_5939#1      CATTGTTGATGGTGCTGGTGTGAGCATACCGTGTTAAACGGGTGGGTGGGTGCGTGCGTG 295
                      ********************************** * ***********************

consensus_5939#0      GCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAGCGTT 1618
consensus_5939#1      GCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAAAAAA 355
                      *******************************************************     

consensus_5939#0      CAAATGTGTTGTGACATTTGCAAATTCTTCACGCCGGATGCATCCTTA 1666
consensus_5939#1      AAAAAAAAAAAA------------------------------------ 367
                       ***