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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence
[ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCGAAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTGGTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTGTGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTCGAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTCGTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU075827 [ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCGAAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTGGTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTGTGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTCGAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTCGTCGACCTCCTCGCG ]
[+] EMBL AU075826 [ TGGCNCCGCCGCGGAGGCCGT GAGGCGCCGCCGCCGTCGNACATGATCGTCGTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAAAAGA]
[-] EMBL CB666993 [GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCGCCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTCGCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGGAGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTTGGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAACCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGACGTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAATTAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAATAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAAGGATTGTTTTGCTTAAAAAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5941#0 ATGCAGGCGGAGAATGGCGACGACGGGTCGTCGGCGTCGCCGCGGTGGACGTACTTCCCG 60
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 AAGATCGCCGGAGACATGGCGAGGGAAGGGAGGGTGATGGAGGTGCTGGACAGGCGGGTG 120
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 GTGGAGTCCGGCGAGGCGGTGGAGGAGGCGGCGGTGCGGAGGCTGGTCCACGTGGCGCTG 180
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 TGGTGCGCGCAGGAGAAGGCGGNGGCGCGCCCCACCATGGCGCGCGTGGTGGAGATGCTC 240
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 GAGGGGCGTGGCGCCGCCGCGGAGGCCGTGGAGGCGCCGCCGCCGTCGGACATGATCGTC 300
consensus_5941#1 ------------------------------------------------------------
consensus_5941#0 GTCGACCTCCTCGCGCTCGACCCGGCGGCGCGCGGCCCCGGCCCGTTCGGCCTGCCGCCG 360
consensus_5941#1 --------------------------GGCGCGCGGCCCCGGCCCGTTCGGCCTGCCNCCG 34
****************************** ***
consensus_5941#0 CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC 420
consensus_5941#1 CCGGCGGCGGCCAGCGACGGCGGGATGCAGGTGACGTCGTCGGGGATCAGCAACTCGTTC 94
************************************************************
consensus_5941#0 GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG 480
consensus_5941#1 GCGCTCTCCTACCTGTCGGGACGATGACCTCACGCTCTCCGCACGGTGGCTCGCCGGAGG 154
************************************************************
consensus_5941#0 AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT 540
consensus_5941#1 AGTGACGTCACTCCGGCGACGAGGTTTCTCCGAGCCCCAGTTGGGTTCACGTGAACCGTT 214
************************************************************
consensus_5941#0 GGATGAAGCACGTGCGGACGANATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA 600
consensus_5941#1 GGATGAAGCACGTGCGGACGAGATGGTGGTCGTGTGGGGTTCGGAGAAAAATTCTCCGAA 274
********************* **************************************
consensus_5941#0 CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC 660
consensus_5941#1 CCCGTGTTGGGTTCACGTGAACCGTCGGATGGAGATCGTGCGGTCAATAATCAAACGGAC 334
************************************************************
consensus_5941#0 GTGAGTCCAGCAACACTATACTTGGGATTTAAAAAAAAAAAAAAAAAAAAAAA------- 713
consensus_5941#1 GTGAGTCCAGCAACCCTATACTTGGGATTTGATTGATTATCTTCTGGTTCCCCAGCTAAT 394
************** *************** * * *
consensus_5941#0 ------------------------------------------------------------
consensus_5941#1 TAGGGTTTAGATCGATGGCGATTTGATGATCGTCTGATTCAAAGTTTATTTCTTTCGAAA 454
consensus_5941#0 ------------------------------------------------------------
consensus_5941#1 TAGAGGTACAAACTGAAGGATTATTTGTTTTTTTTTGCAAAACACAGTTTGTGTGTTTAA 514
consensus_5941#0 ------------------------------
consensus_5941#1 GGATTGTTTTGCTTAAAAAAAAAAAAAAGA 544
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||