These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACTCTCTTTTCTTTTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCTTTGCTAGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGACGATCACTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCCTGTAGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACT] [+] EMBL CF303883 [TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACTCTCTTTTCTTTTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCTTTGCTAGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGACGATCACTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCCTGTAGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACT] consensusID : consensus_5942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [GCCATGGCATGGACATCAAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGCGAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGATTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGT-CTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCA-GGGAGGNNATGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTTCTTG] [+] EMBL CF309540 [GCCATGGCATGGACATCAAGGGCCCCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGCGAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGATTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGT CTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCA GGGAGGNNATGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACTC ] [+] EMBL CF311215 [ ACCAAGTGCATACCTGGAGCCAAGGTGGAGAA AACAAGTTCTGTGTGTACTGTCCACTTGAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGGAGG ATGGTGTTCGAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCGCTAGGGTTCGCCGACTGCACCAAC GTGCTGCCGGTGTACATCGGCGACGACCGGACCGACGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAAGTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5942#0 TGGAGCCAAGGTGGAGAACAACAAGTTCTGTGTGTCTGTCCACTTCAGATGTGTCGATGA 60 consensus_5942#1 ----------------------------------------------------------GC 2 * consensus_5942#0 AAAGAGCTGGAGCACATTGGCTGACATAGTGAAGGCAGAGCTCAAGGACTACCCCAAACT 120 consensus_5942#1 CATGGCATGGACATCAAGGGCC----CCGCGAAGGCCTCCCGCCACAACAAGGCCAAGGC 58 * * **** ** *** * ****** * * * ** * **** consensus_5942#0 GAA----GCTCACGCAGGGGAGGATGGTGAGTTTTTTTTTTTTTTATTCTCACT-CTCTT 175 consensus_5942#1 GAAAGGCGTTCTCTTTCAGCCGGCTAGCGAGTTCCTCCCCATGATAGAACAGGTGCACGA 118 *** * ** * * ** * * ***** * * ** * * * consensus_5942#0 TTCTTTTCTTTTTTCTTTTTTTTTTGTTTCTGCAGACATGTGTAGCCATCAATCGATTCT 235 consensus_5942#1 TTCTCTGATAGAAAGGACCAAGTGCATACCTGGAGCCAAG-GTGGAGAACAACAAGTTCT 177 **** * * * * *** ** ** * ** * * *** **** consensus_5942#0 TTGCTAGGTAGAGATATATGCTTATTATTATTAAGCTTTGATATGTTGCGGCCGTGAGA- 294 consensus_5942#1 GTGTGTCTGTCCACTTCAGATGTGTCGATGAAAAGAGCTGGAGCACATTGGCTGACATAG 237 ** * * * * * *** ** *** * * * consensus_5942#0 CGATCACTGAGTCATTGTCCTCCGATCATTGGATGCTTCTCC-------TGTAGGTGTTC 347 consensus_5942#1 TGAAGGCAGAGCTCAAGGACTACCCCAAACTGAAGCTCACGCAGGGAGGNNATGGTGTTC 297 ** * *** * ** * * ** *** * ******* consensus_5942#0 GAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCG 407 consensus_5942#1 GAGATCCGGCCCACCATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCCTCCTCGAGTCG 357 ************************************************************ consensus_5942#0 CTAGGGTTCGCCGACTGCACCAACG-TGCTGCCGGTGTACATCGGCGACGACCGGACCGA 466 consensus_5942#1 CTAGGGTTCGCCGACTGCACCAACNGTGCTGCCGGTGTACATCGGCGACGACCGGACCGA 417 ************************ ********************************** consensus_5942#0 CGAGGACGCGTTCAAGGTGCTCCGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAA 526 consensus_5942#1 CGAGGACGCGTTCAAGGTGCTCTGCAAGAGAGGCCAGGGCATCGGCATCCTCGTGTCCAA 477 ********************** ************************************* consensus_5942#0 GTACCCCAAGGACACCAACGCCTCCTACT------------------------------- 555 consensus_5942#1 GTACCCCAAGGACACCAACGCCTCCTACTCCCTGCAAGAGCCAGCCGAGGTGATGGAGTT 537 ***************************** consensus_5942#0 ---- consensus_5942#1 CTTG 541 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||