These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1836 fasta sequence [GGAGTATTTTTCGATCTGAACCAAACAAGCACATAACCAAAACCTCAAAACATGTGTAGCCAAGTTGGCTAGCTTTCACCGAGTACAGTATATACCCTACTACGGATATTGGCCGTCTGAATTGTTCTTCAGCTCATTCCAAGACGTCAAATGCTGGACAAATTCATCGATGCACCTCTCTTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTTCCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGACCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGCGTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCCCTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAGTATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAGGAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAGGAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCATCGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCACTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGGCGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGCGCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAGGCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGCGCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTGGTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAGGATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAGATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGAGAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGACGTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCACGAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGGGGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCAGGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGAGGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTGTGTGTGAGAAGTTTGGCTCTGATGATCCAGTCATGAGTGTATAGGGAGTACTCCGTATGCAAATCGTGCTAGTTAAAGGGGAGAAAACGAGGAAAGATTCCCGAACGCGATGCGTATTGTCGAGCCCAGCCGAGTGCGAGGCAGCCGGGACTACTCATCTCCTCCCTCCATCTACTACCTCCCTCAAAAAAAAAAAAAAACTTTTATCCAGATTCATTATTTTAGGAGGAAACCCCTCCTTAGAGCAGGTATAATAGAGTATGATAAGCCAGCGAT] [-] EMBL AK064270 [GGAGTATTTTTCGATCTGAACCAAACAAGCACATAACCAAAACCTCAAAACATGTGTAGCCAAGTTGGCTAGCTTTCACCGAGTACAGTATATACCCTACTACGGATATTGGCCGTCTGAATTGTTCTTCAGCTCATTCCAAGACGTCAAATGCTGGACAAATTCATCGATGCACCTCTCTTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTTCCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGACCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGCGTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCCCTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAGTATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAGGAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAGGAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCATCGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCACTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGGCGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGCGCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAGGCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGCGCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTGGTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAGGATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAGATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGAGAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGACGTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCACGAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGGGGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCAGGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGAGGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTGTGTGTGA ] [+] EMBL AK108055 [ AATGCTGGACAAATTCATCGATGCACCTCTCTTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTTCCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGACCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGCGTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCCCTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAGTATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAGGAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAGGAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCATCGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCACTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGGCGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGCGCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAGGCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGCGCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTGGTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAGGATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAGATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGAGAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGACGTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCACGAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGGGGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCAGGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGAGGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTGTGTGTGAGAAGTTTGGCTCTGATGATCCAGTCATGAGTGTATAGGGAGTACTCCGTATGCAAATCGTGCTAGTTAAAGGGGAGAAAACGAGGAAAGATTCCCGAACGCGATGCGTATTGTCGAGCCCAGCCGAGTGCGAGGCAGCCGGGACTACTCATCTCCTCCCTCCATCTACTACCTCCCTCAAAAAAAAAAAAAAACTTTTATCCAGATTCATTATTTTAGGAGGAAACCCCTCCTTAGAGCAGGTATAATAGAGTATGATAAGCCAGCGAT] consensusID : consensus_5946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TCCGGCACGCCGAAATGCGCGCACGCCGTCGCCGTGTACGGCATCATGAGGACGCAGGGAACCTTGCGGTCGGCGGCGGAGGCGGCGGCCCAGGAAAGCATGCCGTCGAGGATGAGCCAGTCGACCTTGTTCCCCGCGGCGGCGGCGGCGTCGAGGAAGGCGGAGAAGGGCGCGGTGAGCCCATCGGAGGCCTTCCAGAGAGCGGATGACATGTGATCGGGGACGTCGGTGGTGGCCTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCTCGACGAACTCGACGGACGGGCACGGGCGGCGGAGGCGAGCGATGTTGCGCGGGGTGGAGACGAAGGACACGCGGAGGCCGCGCGAGGCCAGGCGGCCGGCGAGCTCGAGGGCAGGGAGGAGGTGGCCGAACGCGAGCCACGGGAAGACG] [-] EMBL AU182347 [TCCGGCACGCCGAAATGCGCGCACGCCGTCGCCGTGTACGGCATCATGAGGACGCAGGGAACCTTGCGGTCGGCGGCGGAGGCGGCGGCCCAGGAAAGCATGCCGTCGAGGATGAGCCAGTCGACCTTGTTCCCCGCGGCGGCGGCGGCGTCGAGGAAGGCGGAGAAGGGCGCGGTGAGCCCATCGGAGGCCTTCCAGAGAGCGGATGACATGTGATCGGGGACGTCGGTGGTGGCCTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCTCGACGAACTCGACGGACGGGCACGGGCGGCGGAGGCGAGCGATGTTGCGCGGGGTGGAGACGAAGGACACGCGGAGGCCGCGCGAGGCCAGGCGGCCGGCGAGCTCGAGGGCAGGGAGGAGGTGGCCGAACGCGAGCCACGGGAAGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5946#0 GGAGTATTTTTCGATCTGAACCAAACAAGCACATAACCAAAACCTCAAAACATGTGTAGC 60 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CAAGTTGGCTAGCTTTCACCGAGTACAGTATATACCCTACTACGGATATTGGCCGTCTGA 120 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 ATTGTTCTTCAGCTCATTCCAAGACGTCAAATGCTGGACAAATTCATCGATGCACCTCTC 180 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 TTCGCGCTCCCTGTCCGCCACGATCTCCTGCAGCTTCCGGGCATTGGCGAAGAACGTCTT 240 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CCCCTCTTCCTCCACCACGACGGCGCGGACGGCTCCGGCGACGCCGCCTCGGTCGAACGA 300 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CCCGTCCTCGTCGTTCCTCGGCACCGCCACTCCGAGCTTCCTCCCCTCGAGAATCCGCGC 360 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GTTCGGGCCTTGGTCGCCTAAGATCGGCAGCATGATCAGCGGGTGCCCGAACTGGAGCCC 420 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CTCGACGACGGAGCCCCACCCGCAGTGCGTCAGGAACGCGCACACGGCGGCGTGCGCCAG 480 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 TATGCTCACCTGAGGAGCCCACCGCGTCGTGACCAGCCCGCGCTCGCCGGTGCGGCCCAG 540 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GAACCCCGCTGGTAGGACGCTGTCCGCGTCGACGCCGGCGGGCTTCCTCATGGCCCAGAG 600 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GAAGCGCGTCCCGGCGAGGTCCAGCCCGTGAGCCAGCTCGCGCAGCAGGTCCGCGCTCAT 660 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CGGCGCCTCGCTTCCCAGCGCGACGTAGACGACCGACTTGGCCGGCTGAGCGTCGAGCCA 720 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CTGCATGATTGCGTCGTGCTTGCCGTTCTTGCTGACGCCGCGGGCGCCGTCCGGCCGTGG 780 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CGGGAGCAGGCCGAACGGGACGACCGGCTTGCCGTAGAACCTCGTCAGGATCGTGAACGC 840 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GCCGGGCTCCAGCTCGGGGCAGCTCCGCATTGCGACGAGCTTGGACCTCTGCAGCGTCAG 900 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GCTGTAGCGGGTCATGATGGACACCCCCGAGGCGCCTTCCGTCGCGAACTCCTCCGTGGC 960 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GCGCTTCGCCTCGAAGCTCGGCGCCGCCGTGCCCATGGACCGGACTATCGCCTCGCGCTG 1020 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 GTCCGCGCTCGACTCGGTTGGCGGAGCAGACGAGGCCACGACGGCTGCGGAGCAGGGGAG 1080 consensus_5946#1 ------------TCCGGCACGCCGAA---ATGCGCGCACGCCGTC-GCCGTGTACGGCAT 44 *** ** ** * * * **** ** * ** * * * ** * consensus_5946#0 GATCATGGCGCACGGCACCCCGCGCTCCTGAGATGCCAGAGCGACCCAGTGATGCATGAG 1140 consensus_5946#1 CATGAGGACGCAGGGAACCTTGCGGTCGGCGGCGGAGGCGGCGGCCCAGGAAAGCATGCC 104 ** * * **** ** *** *** ** * * *** ***** * ***** consensus_5946#0 ATCGGCGAGAACCCAATCCGGCCTCTTGCCGCCGGCGCACGCGGTGTCGAGGAACGCGGA 1200 consensus_5946#1 GTCGAGGATGAGCCAGTCGACCTTGTTCCCCGCGGCGGCGGCGGCGTCGAGGAAGGCGGA 164 *** ** * *** ** * * ** ** ***** **** ********* ***** consensus_5946#0 GAACGGCGCGGCGAGCCCGTCGAACGCCTTCCTGTGAAGCTCGAACTTGTCGAACGGGAC 1260 consensus_5946#1 GAAGGGCGCGGTGAGCCCATCGGAGGCCTTCCAGAGAGCGGATGACATGTGATCGGGGAC 224 *** ******* ****** *** * ******* * ** ** *** ***** consensus_5946#0 GTCGCTGGTGGCCTCGGCGCCGTCGGGGAGCCCGTCGACGCGCGGCAGTGGGAGCGCCAC 1320 consensus_5946#1 GTCGGTGGTGGCCTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCTCGAC 284 **** ************************* ************** ** ** *** * ** consensus_5946#0 GAGGTCGACGAGCTCTGCCAGCTCGGGGCGAACCGGCGGGAGGCGGGCGAGGTTGCGCGG 1380 consensus_5946#1 GAACTCGACGGACG-----GGCACGGG------CGGCGG-AGGCGAGCGATGTTGCGCGG 332 ** ****** * ** **** ****** ***** **** ********* consensus_5946#0 GGTGGAGACGAAGGACACGCGGTGGCCGCGCGCGGCGAGGCGCTCGGCGAGGTCAAGGCA 1440 consensus_5946#1 GGTGGAGACGAAGGACACGCGGAGGCCGCGCGAGGCCAGGCGGCCGGCGAGCTCGAGGGC 392 ********************** ********* *** ***** ******* ** *** consensus_5946#0 GGGGAGCAGGTGGCCGAAGGCGAGCCACGGGAAGATGACGACGTGCAGCGGCGACTGCGA 1500 consensus_5946#1 AGGGAGGAGGTGGCCGAACGCGAGCCACGGGAAGACG----------------------- 429 ***** *********** **************** * consensus_5946#0 GGAATGGGCGTCGTCCATTTTCGGCCGGCGCGCACCGGTCAGCACTCAGGCGTCAGCGTG 1560 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 TGTGTGAGAAGTTTGGCTCTGATGATCCAGTCATGAGTGTATAGGGAGTACTCCGTATGC 1620 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 AAATCGTGCTAGTTAAAGGGGAGAAAACGAGGAAAGATTCCCGAACGCGATGCGTATTGT 1680 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CGAGCCCAGCCGAGTGCGAGGCAGCCGGGACTACTCATCTCCTCCCTCCATCTACTACCT 1740 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 CCCTCAAAAAAAAAAAAAAACTTTTATCCAGATTCATTATTTTAGGAGGAAACCCCTCCT 1800 consensus_5946#1 ------------------------------------------------------------ consensus_5946#0 TAGAGCAGGTATAATAGAGTATGATAAGCCAGCGAT 1836 consensus_5946#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||