cluster # 5948

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Oryza sativa
cluster # 5948 cluster # 5948 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5948#0 length = 1272 sequences # 2

consensus_5948#1 length = 206 sequences # 1

consensusID : consensus_5948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1272
fasta sequence

                              [CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTTCTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCTACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGCCGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGGGCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCCTGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGCGGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGACGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCAGTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCTGGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCCGAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAAGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATTTACGG-GTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCGGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAGGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTTACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATTCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTATCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAGGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGGCTGAGTGGTGAA]

[+] EMBL AK072937             [CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTTCTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCTACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGCCGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGGGCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCCTGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGCGGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGACGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCAGTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCTGGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCCGAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAAGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATTTACGG GTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCGGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAGGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTTACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATTCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTATCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAGGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGGCTGAGTGGTGAA]
[+] EMBL AK067389             [     CCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTTCTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCTACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGCCGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGGGCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCCTGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGCGGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGACGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCAGTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCTGGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCCGAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAAGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATTTACGGAGTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCGGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAGGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTTACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATTCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTATCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAGGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGGCTGAGTGGTGAA]




>consensus_5948#0
CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTT
CTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCT
ACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGC
CGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGG
GCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCC
TGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGC
GGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGA
CGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCA
GTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCT
GGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGG
CGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGC
TGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCC
GAACGGTGTGGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGAA
GGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACATT
TACGGGTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTCG
GCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCAG
GATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCTT
ACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGATT
CTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTAT
CGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCAG
GAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAGG
CTGAGTGGTGAA

consensusID : consensus_5948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [GGGTACGGTTCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTNATGCCCGGAAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTNANATGTGGCTGGAAATNTATGATTTCAGGCCCNGCATCACGCCGGTAGAGCCGAACGGTGTTGGCGGAATTGCCGCCTTCCGGTTTTCCTGANANNTTTTCGGTNCTTT]

[+] EMBL AU068497             [GGGTACGGTTCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTNATGCCCGGAAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTNANATGTGGCTGGAAATNTATGATTTCAGGCCCNGCATCACGCCGGTAGAGCCGAACGGTGTTGGCGGAATTGCCGCCTTCCGGTTTTCCTGANANNTTTTCGGTNCTTT]




>consensus_5948#1
GGGTACGGTTCCGGCGAGGCCGGCGGCGGCGGCGGTGGCGGCGGCTCGGGTNATGCCCGG
AAGTGGTGCAAGACGTCTGGCTACTATGCTGATCCTNANATGTGGCTGGAAATNTATGAT
TTCAGGCCCNGCATCACGCCGGTAGAGCCGAACGGTGTTGGCGGAATTGCCGCCTTCCGG
TTTTCCTGANANNTTTTCGGTNCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5948#0      CGAGGCCCTCGCCGGCGCCGGCGCCGCCACGCCCATCTCCATCCCCGACCACCACTTCTT 60
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CTCCGGCGAGCTCGCCTCGGGAGACGAATCCGCAGCTCCAGAGGCAGAGAATCGAATGCT 120
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      ACTACCACCCGTGAAAGGTACGGTGTGTCGTGTACCGCCTTGAAATCTTAGCTGGTTCGC 180
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CGGTGATCATGCCGTGAAGCCGCCGCCGCAGGCATCTTCCCGGCGAGCGAGTTGGTAGGG 240
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GCGCTTCCACTCGCGTAGCTACGAATCTTGGCCTTCCCGGCGGCGATTGGATGGTGCCCC 300
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      TGACCCTGAGGTGAATTCCAAGAAGATCCAAGAACCATCCCCTCCCCGGATGGATGACGC 360
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GGAGGCGAACATCCTCGCGTCCCTCGGCCGCGTGCGCCTCTGCGACCTCGCCGCCGCCGA 420
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      CGGCCTCCCGTCCGACGGCTACAAGATGTGCGTGTCGGCCCTGATGCAGTCGCTGGCGCA 480
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GTACTCGGCGGCCGTCGTCGAGCTGCCTCCGGCCGACGGCGCCCTGCTGAGGTCGGGGCT 540
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GGACTCCGCACGCCTCTTCTTCCACCAGCGAGGGTACGGATCCGGCGAGGCCGGCGGCGG 600
consensus_5948#1      -------------------------------GGGTACGGTTCCGGCGAGGCCGGCGGCGG 29
                                                     ******** ********************

consensus_5948#0      CGGCGGTGGCGGCGGCTCGGGTGATGCCCGGGAGTGGTGCAAGACGTCTGGCTACTATGC 660
consensus_5948#1      CGGCGGTGGCGGCGGCTCGGGTNATGCCCGGAAGTGGTGCAAGACGTCTGGCTACTATGC 89
                      ********************** ******** ****************************

consensus_5948#0      TGATCCTCAGATGTGGCTGGAAATGTATGATTTCAGGCCCGGCATCACGCCGGTAGAGCC 720
consensus_5948#1      TGATCCTNANATGTGGCTGGAAATNTATGATTTCAGGCCCNGCATCACGCCGGTAGAGCC 149
                      ******* * ************** *************** *******************

consensus_5948#0      GAACGGTGT-GGCGGAATTGCCGCCGTCCGGGTTGCCTGATATGTTTTCGGTGCTTGGGA 779
consensus_5948#1      GAACGGTGTTGGCGGAATTGCCGCCTTCCGGTTTTCCTGANANNTTTTCGGTNCTTT--- 206
                      ********* *************** ***** ** ***** *  ******** ***    

consensus_5948#0      AGGTTTCCCGGGAGGTCTTGGACGCGATTAGCTTCTCGCTGAATCTGCGTAGCTCCACAT 839
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      TTACGGGTTGCTTGACAACATACCCTTGAGAAGCCAGGAGGTATCATCTTCTGTTCTTTC 899
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GGCATGTTGTCATTCGAGGCCGTCGATGGAAGGAGCACAGCAGCATAGCGTCGCTTCTCA 959
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GGATGATGAACAATTGCTCATGTTTTCGGATCAGGAGAACCAGATTGACAAGACTTTGCT 1019
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      TACGCTGGTTAAGTCGGATAGGTCGGGCCTGTATATCAAAGATTTGCAAGGGCGCTGGAT 1079
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      TCTTGTCGATGGGGATCTTGGTCCGCTTGATATTGTTGTCTATCCTGGCCTTGCGCTTTA 1139
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      TCGGGAAACAGCTGGCTATGTAAACCCAGCTGTGCACAAGACGGAGGTCGGCAACTTGCA 1199
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GGAATGTATGTTTGGGCGGTGTTCGTTGGTGTTCAAGCTCATGCCTAGGTCAGTTGCAAG 1259
consensus_5948#1      ------------------------------------------------------------
                                                                                  

consensus_5948#0      GCTGAGTGGTGAA 1272
consensus_5948#1      -------------