cluster # 5955

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5955 cluster # 5955 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5955#0 length = 1798 sequences # 3
consensusID : consensus_5955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1798
fasta sequence
                              [GATCTCTATGGAGATGAAAAGGGTAACCCAGGATTTGGTGGTGGAAATTTTGGAAATCGTGAGGGCTACACATACTTCACTGGTGGTGGCGCCAAGACTAGCCATTTCTCATCTGGTGATGGATGGCAAACGATGGGCGGCCAGGGAAATACAAAAACATTTTCCTTTTCATTTGGTGGTGGTAACCCTGGTGCCGGTGGAGGAAACCCATTTAACTTTGATTTTGGTGATGTTTTTTCCAACATATTTTCTGGTGGATCAATGGGAGGTAGTCAGCATACTGGATCTGCTGGCAAAGCCAGACGTGGTACAAAATCTTCTGGTCATGATTCTAGTTCTGTCAACATTCAGGAGGTCACGATGCAAATTTTCAATAAAGAAACAGCTGATCAAGGAATCACTTGGCTTTTGTTATTCTATACACCAAACACAAAAGGTCAATTTGTGCTAGAAAGTGTCGTGGAGGATGTAGCTCGTTCACTGGATGGTGCACTGAGGGCTGGTAAGGTAAACTGCGACCATGAAAAGGCACTTTGCAAGAAGGCTGGTGTCTCAATAGGAAAATCAGCTCGTCTCTTCATTTATTCATACACAACTACAGAAAAAGGGTCTTTGCATGAGTACTCAGGAGATTATGATTCTAAGAGCCTGAAGACATTTTGTCAAGAACACCTGCCAAGATTTTCCAAAAGGGTAGACATCAACCAATTCAGCTTCCCCTCAAATATCATACCAAACCTTCCTCAAGTGCTCCTACTGTCAGCTAAGAAGGACACACCAGCAATGTGGCGTGCTGTTAGTGGGATGTTCCGCAGTCGATTAATTTTCTATGATGCAGAGGTCCAGGATGTTTCTCATCCACTCCTCAAAAGCCTTGGTGTGAAGAATATTCCAGCTCTAATTGGTAGGTCCGTTAATGGTGAGGAACAACTTCTGAAGGATGGCATTTCAGTGAAAGATCTCAGATCTGGTATCAAAGAATTGAAGAATCTGCTCGAAAATTTTGAGAAGAAGAATAAGAAGCTTGCATCAAACCAAGCTAAGAAACCTGCTCACACAGATCAACCAAAAGAAAACAAAATTCCTCTCCTCACTGCTTCCAACTTTGAGGAGATTTGTGGTGAGAAGACATCAGTATGTATCCTTGGCATTTTCAAATCAAGCAAAGCTAAGGAAAATCTTGAAGCCGTCCTGTCTGAGATATCTCAGAAGACTCTGATAAGGGGGCAGAACTACAACTCTGGGAACGCAGTTGCTTATGCTTTGTTGGACGGGAACAAACAGTCCGCCTTCCTGTCCACGTTTGACAAATCAGCATTCAAGTCGTCTGATAAACTTCTCCTTGCCTACAAGCCCCGACGGGGTAGAT-ATGCTGTGTATGACAATGAGGTGACTATGGAAGAGGCTGAAAGGTTCGTGGTTTCT-GTTTTGAATGGAGATGTTCAATTGTCTGCAGCCGGACGAAAACCAGTTCTTAGGTAGAGCCGTAGA-GGCTATCTCTGCAATTGCAAACCTTGTTTTCTTGGGAACGATTGCAAGTAAAGTGTATATATATAGTTCTTATAGTGTAGTACCTCCTTAAGGAGGTAACTTGGGAACGTTTTCTGCTTGTACATAGCTGAATCTGATTGGAATGAAGAGAG-TAAAATATTCTGCAGTCGGCACTTTTGTTGTGTCATGAACTGGAATACCCTGACATGGGGCAGTCGGCACTTTTGTTGTGTCATGAACTGGAATACCCTGACATGGGAGAGATCACTCCCCCTGTAACATGAGCTGTTTTGATGTCAAAGAACTC]

[+] EMBL AK063376             [GATCTCTATGGAGATGAAAAGGGTAACCCAGGATTTGGTGGTGGAAATTTTGGAAATCGTGAGGGCTACACATACTTCACTGGTGGTGGCGCCAAGACTAGCCATTTCTCATCTGGTGATGGATGGCAAACGATGGGCGGCCAGGGAAATACAAAAACATTTTCCTTTTCATTTGGTGGTGGTAACCCTGGTGCCGGTGGAGGAAACCCATTTAACTTTGATTTTGGTGATGTTTTTTCCAACATATTTTCTGGTGGATCAATGGGAGGTAGTCAGCATACTGGATCTGCTGGCAAAGCCAGACGTGGTACAAAATCTTCTGGTCATGATTCTAGTTCTGTCAACATTCAGGAGGTCACGATGCAAATTTTCAATAAAGAAACAGCTGATCAAGGAATCACTTGGCTTTTGTTATTCTATACACCAAACACAAAAGGTCAATTTGTGCTAGAAAGTGTCGTGGAGGATGTAGCTCGTTCACTGGATGGTGCACTGAGGGCTGGTAAGGTAAACTGCGACCATGAAAAGGCACTTTGCAAGAAGGCTGGTGTCTCAATAGGAAAATCAGCTCGTCTCTTCATTTATTCATACACAACTACAGAAAAAGGGTCTTTGCATGAGTACTCAGGAGATTATGATTCTAAGAGCCTGAAGACATTTTGTCAAGAACACCTGCCAAGATTTTCCAAAAGGGTAGACATCAACCAATTCAGCTTCCCCTCAAATATCATACCAAACCTTCCTCAAGTGCTCCTACTGTCAGCTAAGAAGGACACACCAGCAATGTGGCGTGCTGTTAGTGGGATGTTCCGCAGTCGATTAATTTTCTATGATGCAGAGGTCCAGGATGTTTCTCATCCACTCCTCAAAAGCCTTGGTGTGAAGAATATTCCAGCTCTAATTGGTAGGTCCGTTAATGGTGAGGAACAACTTCTGAAGGATGGCATTTCAGTGAAAGATCTCAGATCTGGTATCAAAGAATTGAAGAATCTGCTCGAAAATTTTGAGAAGAAGAATAAGAAGCTTGCATCAAACCAAGCTAAGAAACCTGCTCACACAGATCAACCAAAAGAAAACAAAATTCCTCTCCTCACTGCTTCCAACTTTGAGGAGATTTGTGGTGAGAAGACATCAGTATGTATCCTTGGCATTTTCAAATCAAGCAAAGCTAAGGAAAATCTTGAAGCCGTCCTGTCTGAGATATCTCAGAAGACTCTGATAAGGGGGCAGAACTACAACTCTGGGAACGCAGTTGCTTATGCTTTGTTGGACGGGAACAAACAGTCCGCCTTCCTGTCCACGTTTGACAAATCAGCATTCAAGTCGTCTGATAAACTTCTCCTTGCCTACAAGCCCCGACGGGGTAGAT ATGCTGTGTATGACAATGAGGTGACTATGGAAGAGGCTGAAAGGTTCGTGGTTTCT GTTTTGAATGGAGATGTTCAATTGTCTGCAGCCGGACGAAAACCAGTTCTTAGGTAGAGCCGTAGA GGCTATCTCTGCAATTGCAAACCTTGTTTTCTTGGGAACGATTGCAAGTAAAGTGTATATATATAGTTCTTATAGTGTAGTACCTCCTTAAGGAGGTAACTTGGGAACGTTTTCTGCTTGTACATAGCTGAATCTGATTGGAATGAAGAGAG TAAAATATTCTGCAGTCGGCACTTTTGTTGTGTCATGAACTGGAATACCCTGACATGGGGCAGTCGGCACTTTTGTTGTGTCATGAACTGGAATACCCTGACATGGGAGAGATCACTCCCCCTGTAACATGAGCTGTTTTGATGTCAAAGAACTC]
[+] EMBL AA752445             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           cgagTTTCAAATCAAGCAAAGCTAAGGAAAATCTTGAAGCCGTCCTGTCTGAGATATCTCAGAAGACTCTGATAAGGGGGCAGAACTACAACTCTGGGAACACAGTTGCTTATGCTTTGTTGGACGGGAACAAACAGTCCGCCTTCCTGTCCACGTTTGACAAATCAGCATTCAAGTCGTCTGATAAACTTCTCCTTGCCTACAAGCCCCGACGGGGTAGAT ATGCTGTGTATGACAATGAGGTGACTATGGAAGAGGCTGAAAGGTTCGTGGTTTCTKTTTTTGAATGGAGAWGT                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BI802066             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAACTTCTCCTTGCCTACAAGCCCCGACGGGGTAGATGATGCTGTGTATGAC ATGAGGTGACTATGGAAGAGGCTGAAAGGTTCGTGGTTTCT GTTTTGAATGGAGATGTTC ATTGTCT CAGCCGGACGAAAACC GTTCTTAGGTAGA CCGTAGACGGCTATCTCTGCCATTGC AACCTTGTTTTCTTGGGAACGATT CAAGTAAAGAGTATATATATAGTTCTTATAGTGTAGTACC CCTTAAGGAGGTAACTTGGGAACGTTTTCTGCTTGTACATATCTGAATCTGATTGGAATGAAGAGAGCTAAAATATTCTCCAaaa                                                                                                                                          ]




>consensus_5955#0
GATCTCTATGGAGATGAAAAGGGTAACCCAGGATTTGGTGGTGGAAATTTTGGAAATCGT
GAGGGCTACACATACTTCACTGGTGGTGGCGCCAAGACTAGCCATTTCTCATCTGGTGAT
GGATGGCAAACGATGGGCGGCCAGGGAAATACAAAAACATTTTCCTTTTCATTTGGTGGT
GGTAACCCTGGTGCCGGTGGAGGAAACCCATTTAACTTTGATTTTGGTGATGTTTTTTCC
AACATATTTTCTGGTGGATCAATGGGAGGTAGTCAGCATACTGGATCTGCTGGCAAAGCC
AGACGTGGTACAAAATCTTCTGGTCATGATTCTAGTTCTGTCAACATTCAGGAGGTCACG
ATGCAAATTTTCAATAAAGAAACAGCTGATCAAGGAATCACTTGGCTTTTGTTATTCTAT
ACACCAAACACAAAAGGTCAATTTGTGCTAGAAAGTGTCGTGGAGGATGTAGCTCGTTCA
CTGGATGGTGCACTGAGGGCTGGTAAGGTAAACTGCGACCATGAAAAGGCACTTTGCAAG
AAGGCTGGTGTCTCAATAGGAAAATCAGCTCGTCTCTTCATTTATTCATACACAACTACA
GAAAAAGGGTCTTTGCATGAGTACTCAGGAGATTATGATTCTAAGAGCCTGAAGACATTT
TGTCAAGAACACCTGCCAAGATTTTCCAAAAGGGTAGACATCAACCAATTCAGCTTCCCC
TCAAATATCATACCAAACCTTCCTCAAGTGCTCCTACTGTCAGCTAAGAAGGACACACCA
GCAATGTGGCGTGCTGTTAGTGGGATGTTCCGCAGTCGATTAATTTTCTATGATGCAGAG
GTCCAGGATGTTTCTCATCCACTCCTCAAAAGCCTTGGTGTGAAGAATATTCCAGCTCTA
ATTGGTAGGTCCGTTAATGGTGAGGAACAACTTCTGAAGGATGGCATTTCAGTGAAAGAT
CTCAGATCTGGTATCAAAGAATTGAAGAATCTGCTCGAAAATTTTGAGAAGAAGAATAAG
AAGCTTGCATCAAACCAAGCTAAGAAACCTGCTCACACAGATCAACCAAAAGAAAACAAA
ATTCCTCTCCTCACTGCTTCCAACTTTGAGGAGATTTGTGGTGAGAAGACATCAGTATGT
ATCCTTGGCATTTTCAAATCAAGCAAAGCTAAGGAAAATCTTGAAGCCGTCCTGTCTGAG
ATATCTCAGAAGACTCTGATAAGGGGGCAGAACTACAACTCTGGGAACGCAGTTGCTTAT
GCTTTGTTGGACGGGAACAAACAGTCCGCCTTCCTGTCCACGTTTGACAAATCAGCATTC
AAGTCGTCTGATAAACTTCTCCTTGCCTACAAGCCCCGACGGGGTAGATATGCTGTGTAT
GACAATGAGGTGACTATGGAAGAGGCTGAAAGGTTCGTGGTTTCTGTTTTGAATGGAGAT
GTTCAATTGTCTGCAGCCGGACGAAAACCAGTTCTTAGGTAGAGCCGTAGAGGCTATCTC
TGCAATTGCAAACCTTGTTTTCTTGGGAACGATTGCAAGTAAAGTGTATATATATAGTTC
TTATAGTGTAGTACCTCCTTAAGGAGGTAACTTGGGAACGTTTTCTGCTTGTACATAGCT
GAATCTGATTGGAATGAAGAGAGTAAAATATTCTGCAGTCGGCACTTTTGTTGTGTCATG
AACTGGAATACCCTGACATGGGGCAGTCGGCACTTTTGTTGTGTCATGAACTGGAATACC
CTGACATGGGAGAGATCACTCCCCCTGTAACATGAGCTGTTTTGATGTCAAAGAACTC
clustalw multiple alignements is not computed in this case