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Oryza sativa
cluster # 5959 cluster # 5959       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5959#0 length = 966 sequences # 3  

consensusID : consensus_5959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 966
fasta sequence
                              [CTCAATTTTCAGAAGAAAATCACACCCTATAGGAACTTTGATCAACCATTAAACGTTGGTGGTCATTCAGTTGTTGGCGATGACTATATTTCAAGATTACTTTTAGATCTAGAGGGAGATGACCAGCAGTTGGATTTAGCGCTAGAATCAAGAAATCACGCTGTGGAAACTATCAAGCAAAGCCAGCAGCAATTAATAGTAGTAGCATCATTGGTAGATCGCATCCCTAATCTTGCTGGACTGACAAGAACATGCGAGATATTCAAAGCAGTTGGATTGGCCGTTGCTGACAAAAGTATTATCGAGGACAAG-CAGTTTCGGTTGATCAGTGTGACGGC-GGAGAAGTGGTTGCCCAT-GATGGAGGTTCCAGTGAATAGCGTCAAAGTGTTCTTGGAGAAGAAGAGGCTGGAAGGCTATTCCGTGATA-GGGTTGGAGCAGACGGCCAACAGCAAGCCACTGGACCACTTCTCTTTTCCGAGCAAAACGGTGCTTGTGCTGGGACGGGAGAAGGAAGGCATCCCGGTGGATATCATCCATGTGTTGGGCGCATGCGTGGAGATCCCGCAGCTGGGCATCGTCAGGTCACTCAATGTTCATGTCAGCGGTGCCATTGCCGTGTGGGAATACACCCGCCAGCAACGCATCGCAACTTAATTTCTGTTTGGGCAGAAATCAACTTAATTTTCTCAAAGCTGTTCCTTGTTACTAGTACTCCTACTCCATAGTGGAGTCTGTATTATATGTATTCATCAATCGGTTAGAACTAGAAACAAATGAGAGATGATAGTACTCCACTTGTCTTGCCCGTACATACAGCACAACTCTACTGTCCTGACCTGCACCCCAGCTATTGTTATTACCAAAAAACCCATATTTGTTCTTGCTAGTAATGCCACGCACTACGGCACTAGATAGAGGTGAGTTTATAATACGAATAAAACGTTTGTGTTGGAGTATCAAAAAAAA]

[+] EMBL AK063593             [CTCAATTTTCAGAAGAAAATCACACCCTATAGGAACTTTGATCAACCATTAAACGTTGGTGGTCATTCAGTTGTTGGCGATGACTATATTTCAAGATTACTTTTAGATCTAGAGGGAGATGACCAGCAGTTGGATTTAGCGCTAGAATCAAGAAATCACGCTGTGGAAACTATCAAGCAAAGCCAGCAGCAATTAATAGTAGTAGCATCATTGGTAGATCGCATCCCTAATCTTGCTGGACTGACAAGAACATGCGAGATATTCAAAGCAGTTGGATTGGCCGTTGCTGACAAAAGTATTATCGAGGACAAG CAGTTTCGGTTGATCAGTGTGACGGC GGAGAAGTGGTTGCCCAT GATGGAGGTTCCAGTGAATAGCGTCAAAGTGTTCTTGGAGAAGAAGAGGCTGGAAGGCTATTCCGTGATA GGGTTGGAGCAGACGGCCAACAGCAAGCCACTGGACCACTTCTCTTTTCCGAGCAAAACGGTGCTTGTGCTGGGACGGGAGAAGGAAGGCATCCCGGTGGATATCATCCATGTGTTGGACGCATGCGTGGAGATCCCGCAGCTGGGCATCGTCAGGTCACTCAATGTTCATGTCAGCGGTGCCATTGCCGTGTGGGAATACACCCGCCAGCAACGCATCGCAACTTAATTTCTGTTTGAGCAGAAATCAACTTAATTTTCTCAAAGCTGTTCCTTGTTACTAGTACTCCTACTCCATAGTGGAGTCTGTATTATATGTATTCATCAATCGGTTAGAACTAGAAACAAATGAGAGATGATAGTACTCCACTTGTCTTGCCCGTACATACAGCACAACTCTACTGT                                                                                                                                        ]
[+] EMBL CF308055             [                                                                                              GATTACTTTTAGATCTAGAGGGAGATGACCAGCAGTTGGATTTAGCGCTAGAATCAAGAAATCACGCTGTGGAAACTATCAAGCAAAGCCAGCAGCAATTAATAGTAGTAGCATCATTGGTAGATCGCATCCCTAATCTTGCTGGACTGACAAGAACATGCGAGATATTCAAAGCAGTTGGATTGGCCGTTGCTGACAAAAGTATTATCGAGGACAAGNCAGTTTCGGTTGATCAGTGTGACGGCGGGAGAAGTGGTTGCCCATGGATGGAGGTTCCAGTGAATAGCGTCAAAGTGTTCTTGGAGAAGAAGAGGCTGGAAGGCTATTCCGTGATAGGGGTTGGAGCAGACGGCCAACAGCAAGCCACTGGACCACTTCTCTTTTCCGAGCAAAACGGTGCTTGTGCTGGGACGGGAGAAGGAAGGCATCCCGGTGGATAT ATCCATGTGTTGGGCGCATGCGTGGAGATCCCGCAGCTGGGCATCGTCAGGTCACTCAATGTTCATGTCAGCGGTGCCATTGCCGTGTGGGAATACACCCGCCAGCAACGCATCGCAACTTAATTTCTGTTTGGGCAGAAATCAA                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF308056             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACGGTGCTTGTGCTGGGACGGGAGAAGGAAGGCATCCCGGTGGATATCATCCATGTGTTGGGCGCATGCGTGGAGATCCCGCAGCTGGGCATCGTCAGGTCACTCAATGTTCATGTCAGCGGTGCCATTGCCGTGTGGGAATACACCCGCCAGCAACGCATCGCAACTTAATTTCTGTTTGGGCAGAAATCAACTTAATTTTCTCAAAGCTGTTCCTTGTTACTAGTACTCCTACTCCATAGTGGAGTCTGTATTATATGTATTCATCAATCGGTTAGAACTAGAAACAAATGAGAGATGATAGTACTCCACTTGTCTTGCCCGTACATACAGCACAACTATACTGTCCTGACCTGCACCCCAGCTATTGTTATTACCAAAAAACCCATATTTGTTCTTGCTAGTAATGCCACGCACTACGGCACTAGATAGAGGTGAGTTTATAATACGAATAAAACGTTTGTGTTGGAGTATCAAAAAAAA]


>consensus_5959#0 CTCAATTTTCAGAAGAAAATCACACCCTATAGGAACTTTGATCAACCATTAAACGTTGGT GGTCATTCAGTTGTTGGCGATGACTATATTTCAAGATTACTTTTAGATCTAGAGGGAGAT GACCAGCAGTTGGATTTAGCGCTAGAATCAAGAAATCACGCTGTGGAAACTATCAAGCAA AGCCAGCAGCAATTAATAGTAGTAGCATCATTGGTAGATCGCATCCCTAATCTTGCTGGA CTGACAAGAACATGCGAGATATTCAAAGCAGTTGGATTGGCCGTTGCTGACAAAAGTATT ATCGAGGACAAGCAGTTTCGGTTGATCAGTGTGACGGCGGAGAAGTGGTTGCCCATGATG GAGGTTCCAGTGAATAGCGTCAAAGTGTTCTTGGAGAAGAAGAGGCTGGAAGGCTATTCC GTGATAGGGTTGGAGCAGACGGCCAACAGCAAGCCACTGGACCACTTCTCTTTTCCGAGC AAAACGGTGCTTGTGCTGGGACGGGAGAAGGAAGGCATCCCGGTGGATATCATCCATGTG TTGGGCGCATGCGTGGAGATCCCGCAGCTGGGCATCGTCAGGTCACTCAATGTTCATGTC AGCGGTGCCATTGCCGTGTGGGAATACACCCGCCAGCAACGCATCGCAACTTAATTTCTG TTTGGGCAGAAATCAACTTAATTTTCTCAAAGCTGTTCCTTGTTACTAGTACTCCTACTC CATAGTGGAGTCTGTATTATATGTATTCATCAATCGGTTAGAACTAGAAACAAATGAGAG ATGATAGTACTCCACTTGTCTTGCCCGTACATACAGCACAACTCTACTGTCCTGACCTGC ACCCCAGCTATTGTTATTACCAAAAAACCCATATTTGTTCTTGCTAGTAATGCCACGCAC TACGGCACTAGATAGAGGTGAGTTTATAATACGAATAAAACGTTTGTGTTGGAGTATCAA AAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)