cluster # 5960

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Oryza sativa
cluster # 5960 cluster # 5960 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5960#0 length = 861 sequences # 3

consensusID : consensus_5960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 861
fasta sequence

                              [TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTTTNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNAGTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCACAGCATAGTAAAANNTNTCGTGC--AATTCGGCAGNG---TGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGCTTACAAGGCATGNNG-CTCAGTGCC--ACTGTGGCANCCAGTTGNCCAGATGNTGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCTGGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTGCCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCAATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTTTGGTTCCCCTAAATTGAGGGT]

[+] EMBL AA751473             [TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTTTNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNAGTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCACAGCATAGTAAAANNTNTCGTGCCGAATTCGGCAGNGNATTGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGC AGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATNATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGCTTACAAGGCATGNNG CTCAGTGCC  ACTGTGGCANCCAGTTGNCCAGATGN                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AA750688             [                                                                                                                                                                                                    TCGTGC  AATTCGGCAGTG   TGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BQ172863             [                                                                                                                                                                                                                                                       CACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGC TACAAAGCATGATGCCTCAGTGCCTTACTGTGGCA CCAGTTG CCAGATGATGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCTGGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTGCCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCAATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTTTGGTTCCCCTAAATTGAGGGT]




>consensus_5960#0
TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTT
TNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNA
GTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCAC
AGCATAGTAAAANNTNTCGTGCAATTCGGCAGNGTGTCTACACCATCTGGAATCTTGTTT
AACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTT
GCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCA
CCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGC
ATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGT
TGCATGCAGCTTACAAGGCATGNNGCTCAGTGCCACTGTGGCANCCAGTTGNCCAGATGN
TGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATG
GCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCT
GGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTG
CCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCA
ATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTT
TGGTTCCCCTAAATTGAGGGT

clustalw multiple alignements is not computed in this case