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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5960 cluster # 5960       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5960#0 length = 861 sequences # 3  

consensusID : consensus_5960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 861
fasta sequence
                              [TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTTTNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNAGTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCACAGCATAGTAAAANNTNTCGTGC--AATTCGGCAGNG---TGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGCTTACAAGGCATGNNG-CTCAGTGCC--ACTGTGGCANCCAGTTGNCCAGATGNTGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCTGGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTGCCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCAATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTTTGGTTCCCCTAAATTGAGGGT]

[+] EMBL AA751473             [TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTTTNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNAGTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCACAGCATAGTAAAANNTNTCGTGCCGAATTCGGCAGNGNATTGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGC AGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATNATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGCTTACAAGGCATGNNG CTCAGTGCC  ACTGTGGCANCCAGTTGNCCAGATGN                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AA750688             [                                                                                                                                                                                                    TCGTGC  AATTCGGCAGTG   TGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BQ172863             [                                                                                                                                                                                                                                                       CACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGC TACAAAGCATGATGCCTCAGTGCCTTACTGTGGCA CCAGTTG CCAGATGATGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCTGGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTGCCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCAATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTTTGGTTCCCCTAAATTGAGGGT]


>consensus_5960#0 TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTT TNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNA GTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCAC AGCATAGTAAAANNTNTCGTGCAATTCGGCAGNGTGTCTACACCATCTGGAATCTTGTTT AACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTT GCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCA CCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGC ATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGT TGCATGCAGCTTACAAGGCATGNNGCTCAGTGCCACTGTGGCANCCAGTTGNCCAGATGN TGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATG GCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCT GGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTG CCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCA ATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTT TGGTTCCCCTAAATTGAGGGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)