These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 861 fasta sequence [TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTTTNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNAGTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCACAGCATAGTAAAANNTNTCGTGC--AATTCGGCAGNG---TGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGCTTACAAGGCATGNNG-CTCAGTGCC--ACTGTGGCANCCAGTTGNCCAGATGNTGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCTGGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTGCCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCAATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTTTGGTTCCCCTAAATTGAGGGT] [+] EMBL AA751473 [TTTTTTTTTTGNAACANCAAGGNAGNAANGNCNNTTTCNANGNCACAACTNTNAGNGTTTTNAGGTGCAAGCATGCCATTTGAACCACAAAAATGTTGNGCNATGNACACGGGCATGTNAGTTGTAGCATTCACAACATACCGGGTTTCTTTTTAGGAGGTAAAACTCTACGGGTCTCACAGCATAGTAAAANNTNTCGTGCCGAATTCGGCAGNGNATTGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGC AGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATNATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGCTTACAAGGCATGNNG CTCAGTGCC ACTGTGGCANCCAGTTGNCCAGATGN ] [+] EMBL AA750688 [ TCGTGC AATTCGGCAGTG TGTCTACACCATCTGGAATCTTGTTTAACACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGC ] [+] EMBL BQ172863 [ CACTAGTATTGTAGAATCAGCAATGGCAGCATACACCAGCAAGATCTTTGCCCTGTTTGCCTTAATTGCTCTTTCTGCAAGTGCCACTACTGCAATCACCACTATGCAGTATTTCCCACCAACATTAGCCATGGGCACCATGGATCCGTGTAGGCAGTACATGATGCAAACGTTGGGCATGGGTAGCTCCACAGCCATGTTCATGTCGCAGCCAATGGCGCTCCTGCAGCAGCAATGTTGCATGCAGC TACAAAGCATGATGCCTCAGTGCCTTACTGTGGCA CCAGTTG CCAGATGATGCAAGAGCATGCAACAAGTTATTTGTGCTGGACTCGGGCAGCAGCAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAACATGGCCCCTGGTCAACTTCCCACCTCTCTTCCTGGTGGGTTGTTGTTGATCCAAACGTTGGGTTACAATGTACCCCTAGTTAATAAGGTGTTGCCATACTATCGTGGTGCCAACCACAAAAAATAAAAACCATTGGAATAAAATATCAAATCAATTTTAAAAAAAAAAAAAAAAACACGGTCCCCGCCCCCACCCCGCGGGGAACCCCACCTTTGGTTCCCCTAAATTGAGGGT] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||