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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5961 cluster # 5961       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5961#0 length = 922 sequences # 3  

consensusID : consensus_5961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 922
fasta sequence
                              [GCGTACGGAAGACAGCAGCATTATTTTGCATAACACGTTGCATGTTTAGACGGATCTTGGAAGTTGGCAATGATCCATTTGCATTTCTCAGCTTGTCTAACCAGGCTATGGTCTTTTCTCCAGCACTTTTTTGAAGAGGTTTCTGCTTCTCACCTGGCTTAGCGGTTTCAGCTACCCTGTTTGCACAAGCTCTGCCAAAAACAACTATGTCAAGAAGTGAATTTGCACCCAGACGATTTGCACCATGAACAGATGCACATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTG-GTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC-AGGGTCTTCTTTCCCC-GCTGATTCC-GCC-AGCCCGTACCCCTTGGC-TGT-GGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAATCTTCGTTTAAATCCAATTTCATTGCCGGCGTCACTTAAATTTAAGAATTGGACGGAAGGGCCAATTTTNGGGGCCTTAANC]

[+] EMBL CB646850             [GCGTACGGAAGACAGCAGCATTATTTTGCATAACACGTTGCATGTTTAGACGGATCTTGGAAGTTGGCAATGATCCATTTGCATTTCTCAGCTTGTCTAACCAGGCTATGGTCTTTTCTCCAGCACTTTTTTGAAGAGGTTTCTGCTTCTCACCTGGCTTAGCGGTTTCAGCTACCCTGTTTGCACAAGCTCTGCCAAAAACAACTATGTCAAGAAGTGAATTTGCACCCAGACGATTTGCACCATGAACAGATGCACATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTG GTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC AGGGTCTTCTTTCCCC GCTGATTCC GCC AGCC                                                                                                                                       ]
[+] EMBL AU163253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTNATCTTTTAACAGATGTNCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGGGCNATAGAGCCAAAAGGAGGGGCCAGGCCCCGNTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGNGTATTTCACTTGCGCNCGAGGGCTCCCANTTATCCTACACCTNTCAAGTNATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGGGTCTTCTTTCCCCGGCTGATTCCGGCA AGNCCGTACCCCTTGGCTTGTGGGTTTCGCTGGA                                                                                                         ]
[+] EMBL AU070422             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cgnCCTTAGAGCCAAAAGGAGGGGCCAGG CCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGTG GTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC AGGGTCTTCTTTCCCC GCTGATTCC GCCAAGCCCGTTCCCNTTGGC TGT GGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAATCTTCGTTTAAATCCAATTTCATTGCCGGCGTCACTTAAATTTAAGAATTGGACGGAAGGGCCAATTTTNGGGGCCTTAANC]


>consensus_5961#0 GCGTACGGAAGACAGCAGCATTATTTTGCATAACACGTTGCATGTTTAGACGGATCTTGG AAGTTGGCAATGATCCATTTGCATTTCTCAGCTTGTCTAACCAGGCTATGGTCTTTTCTC CAGCACTTTTTTGAAGAGGTTTCTGCTTCTCACCTGGCTTAGCGGTTTCAGCTACCCTGT TTGCACAAGCTCTGCCAAAAACAACTATGTCAAGAAGTGAATTTGCACCCAGACGATTTG CACCATGAACAGATGCACATGCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATC AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT TTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCAC GGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGA GATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCC GCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGAGGGACTCGG GCCTTAGAGCCAAAAGGAGGGGCCAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAA CGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAGGGCTCCCACTTATCCTACACCTCTCA AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT CCGCCAGCCCGTACCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAA TCTTCGTTTAAATCCAATTTCATTGCCGGCGTCACTTAAATTTAAGAATTGGACGGAAGG GCCAATTTTNGGGGCCTTAANC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)