These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1350 fasta sequence [CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGACTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCCGCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTTCCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAGCTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGTCGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGACGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCCGCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGACAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCCGCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACACGGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATAAAAAAGACACTGAATAT] [+] EMBL AK060511 [CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGACTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCCGCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTTCCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAGCTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGTCGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGACGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCCGCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGACAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCCGCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACACGGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATAAAAAAGACACTGAATAT] [+] EMBL AK100771 [CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGACTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCCGCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTTCCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAGCTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGTCGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGACGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCCGCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGACAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGTGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCCGCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACACGGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGAGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTACGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATCGACAAGACGCCCGGCACGGTGTCCATGGCGGAGGCGCGCGACGGCCACGGCGGCATCGAGATTGGCGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAAGCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTTGCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCAATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCAGATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCGATCAACTTCTGTTATAAAAAAGACACTGA ] consensusID : consensus_5964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [GGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCGTGTACGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGACAAGACGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA] [+] EMBL OSC826 [GGCGTCCACTGCTCGGCCTTCACCGTGGCGTGCGCGTACGGTGGACCTGCCTAGCGCGAGTCGACGCCACCTCCGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGCGGTGGCCATCGGCGCGGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGATCGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCGTGTACGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGACAAGACGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5964#0 CTGCTCCACGGGTGGGGATGCCGACCGCGTCGAGCTCACCGTCGCCGAGAGCGGCGACGA 60 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 CTTCGAGGAGCTCGCCGGCGGCGGCCCGATGGATGTTGGGAGGCTGTACTCTCTGGTGCC 120 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 GCGGCTCCCGCGCCCGGAGGAGGGGAGCTCCGAGCTCGCGGCGGTGCAGGTGACGGTTTT 180 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 CCCCGGGAAGGGGCTCGCCGTCGGCGTGTCCATCCACCATGTGGCCTGCGACGATTCCAG 240 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 CTTCATGCACTTCGTCAAGACCTGGGCGGCCAATTGCCGGGTGGCTTCCGGTGGGGACGT 300 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 CGATGCTGTGCCGCCGCCGCCGCCGCCGTTCTTGGACCGTGGCGTGGTCGCCGATCCCGA 360 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 CGGCCTTGCAGCCAAGACGCTCGATCAAATGCGGCAGCTGGCGAACAGCGGGCCACCCCC 420 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 GCCACCGCCGTCCGGGCCGCCGCCGAAGCTGTTCATGGCGTCGTTCACGCTCACCCGCGA 480 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 CAGCATCGACAAGCTCAAGCAGCGCGTCACGGCGAGCGGCGGCGGCGGCGTCCACTGCTC 540 consensus_5964#1 ----------------------------------------------GGCGTCCACTGCTC 14 ************** consensus_5964#0 GGCCTTCACCGTGGCGTGCGCGTACGCGTGGACCTGCCTAGCGCGAGTCGACGCCACCTC 600 consensus_5964#1 GGCCTTCACCGTGGCGTGCGCGTACG-GTGGACCTGCCTAGCGCGAGTCGACGCCACCTC 73 ************************** ********************************* consensus_5964#0 CGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGGTGGAATGCCGCCGCCGCCTGACCCC 660 consensus_5964#1 CGCCGCCAGGGAGCGCGCGCACCTGCTGTTCTCGG------------------------- 108 *********************************** consensus_5964#0 GCCGGTGCCGCAGGAGTACCTCGGCAACTGCCTCCGCCCTTGCTTCGTGGAGGTCGACAC 720 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 GGCCGGCCTGCTCGGCAGCGGCGCCGACGGCGTGGTGACGGCGGCGGTGGCCATCGGCGC 780 consensus_5964#1 --------------------------------------------CGGTGGCCATCGGCGC 124 **************** consensus_5964#0 GGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGAT 840 consensus_5964#1 GGCCATCAGGGGGCTCGACGACGGCGTGCTGGACGGCGCCGACGGGTGGTTCCAGAAGAT 184 ************************************************************ consensus_5964#0 CGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGCCGCGGTACGGCGTGTA 900 consensus_5964#1 CGTGTCGCTGATGCCGCACCGGCCGATGTCCATCGGCGGCTCGNCGCGGTACGGCGTGTA 244 ******************************************* **************** consensus_5964#0 CGACACCGACTTCGGGCTGGGCCGGCCGGCGAAGGTGGAGCTCCTGTCCATC-GACAAGA 959 consensus_5964#1 CGACAACGACTTCGGGCTGGGCCGGNCGGCGAAGGTGGAGCTCCTGTCCATTTGACAAGA 304 ***** ******************* ************************* ******* consensus_5964#0 CGCCCGGCACGGTGTCCATGG-CGGAGGCGCGCGACGG-CCACGGCGGCATCGAGATTGG 1017 consensus_5964#1 CGGCCGGCANGGTGTTCATNGGCGGAGGCGCGCGACGGGCCA------------------ 346 ** ****** ***** *** * **************** *** consensus_5964#0 CGTGGCGCTGCCGGAGGCCGACATGGCGCGGTTCAGCTCATGCTTCGCCGACGGACTGAA 1077 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 GCAGCTGTGAGTGACGAACAGCTTGTTGCATTTCTTGCTTTCTTGCTGCTACGAATTGTT 1137 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 GCAGAGTTCAGAATTTGTTCAGTTTGGATGTGATTCTGTAATGCTAGCTGTTGGATTGCA 1197 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 ATCGTTGATCGATCACATAAGCGATTGTGAATTTGCAATTGTCAATCTATGAAATAATCA 1257 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 GATAAGCTGTAATCTATTCTACATTTTTTTCAGAGATGGAGCAGGATAAGGCCTGCTTCG 1317 consensus_5964#1 ------------------------------------------------------------ consensus_5964#0 ATCAACTTCTGTTATAAAAAAGACACTGAATAT 1350 consensus_5964#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||