These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [CATGGATCCATCATCCATGCACCAATCTATTAAAAACCCAAAACATCTTATAATGTGAAACGGAGGAAGTAGGACACTACCGATCTTGCTGATGCTTTGTTTCATACACCATGTATGCTTGAAAATTCATGCTTGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCATCACTGTTGTTACCTTGATTTCGCCTTGTAGCATCGTGGGATCAACAATCTCATTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCATCAGTAGGACTACTCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCACCCTTGGTTGATATCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCTCTTAGGCAAGCCAAAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACATCTTGCTAGGCCAAAGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTTGGCTTCAAGTCACAATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAAAATGCGACATCCAAAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTATGTTCATGGGC] [+] EMBL CB629651 [CATGGATCCATCATCCATGCACCAATCTATTAAAAACCCAAAACATCTTATAATGTGAAACGGAGGAAGTAGGACACTACCGATCTTGCTGATGCTTTGTTTCATACACCATGTATGCTTGAAAATTCATGCTTGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCATCACTGTTGTTACCTTGATTTCGCCTTGTAGCATCGTGGGATCAACAATCTCATTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCATCAGTAGGACTACTCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCACCCTTGGTTGATATCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCTCTTAGGCAAGCCAAAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACATCTTGCTAGGCCAAAGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTTGGCTTCAAGTCACAATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAAAATGCGACATCCAAAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTATGTTCATGGGC] consensusID : consensus_5966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGTTCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCATATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCTATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCATCTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTGATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAATCTCTT] [-] EMBL BM419276 [TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGTTCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCATATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCTATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCATCTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCTAAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGCAGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTGATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAATCTCTT] consensusID : consensus_5966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [CCGACTAGTTTTAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAACAATCTCATGTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCNTTATTGAAATTTTCATCNGTAGGACTACTCCCTGTTATCTCCCCAAAAAAAAAA] [+] EMBL BM421609 [CCGACTAGTTTTAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAACAATCTCATGTTGTATTCATGGGAAAATCTCTTGCAACATATTCACGAAGGCTTGTACCNTTATTGAAATTTTCATCNGTAGGACTACTCCCTGTTATCTCCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5966#0 ------------------------------------------------------------ consensus_5966#1 TTTTCTTCTCTCNCNTCTCCNTCCCGGGGGGTCTTNTNTCCTTTAAATACTTCCTCTGGT 60 consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 ------------------------------------------------------------ consensus_5966#1 TCCCCATTATAAGATGTTGGGGGGCGATACCATTCATCGTATAGATTCCACTAACGTTCA 120 consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 -------------------------------CATGGATCCATCATCCATG-CACCAATCT 28 consensus_5966#1 TATGAATTTTGGCACATATACGAAGCACAAGCATGGATCCATCATCCAGGGCACGAATCT 180 consensus_5966#2 -------------------------------------------------CCGACTAGTTT 11 ** * * * consensus_5966#0 ATTAAAAACCCAAAACATCTTATAATGTGAAAC---GGAGGAAGTAGGACACTACCG-AT 84 consensus_5966#1 ATTAAAAACCCAAAACATCTTATAATGTGCAACACGGGAGGAAGTAGGANACTACCGCAT 240 consensus_5966#2 TAGACGCGAGCAGGCCCCCTTTTTTTTTGTTTTTTTCTTGGGATGCAAACAATCTCATGT 71 * ** * *** * * ** ** * * * * * * consensus_5966#0 CTTGCTGATGCT-TTGTTTCATACACCATG-TATGCTTGAAA-ATTCATGCT-TGATCCT 140 consensus_5966#1 CTTGCTGATGCTATNGTTTCATACACCATGGTATGCTTGAAACATTCATGCTATGATCCT 300 consensus_5966#2 TGTATTCATGGGAAAATCTCTTGCAACATA---TTCACGAAG-GCTTGTACCNTTAT--T 125 * * *** * ** * ** *** * * *** * * * * ** * consensus_5966#0 AAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGG-AGC 199 consensus_5966#1 AAGGATTTCAGCAGAAACTTGTCCCATTTCCCATCGGTCCTTAGGAGATGCCATGGGAGC 360 consensus_5966#2 GAAATTTTCATCNGTA----GGACTACTCCCTGTTATCTCCCCAAAAAAAAAA------- 174 * ***** * * * * * * * ** * * * * * consensus_5966#0 AGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGC-ATCACTGTTGTTACCTTG 258 consensus_5966#1 AGCAGAGACCTATTCTAACCAACGGAATGATGCAATTCTGCCATCCACTGTGTTACCTTG 420 consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 ATTTCGCCTTGTAGCATCGTGGG-ATCAA--CAATCTCATTTGTATTCATGGG--AAAAT 313 consensus_5966#1 ATTTCGCCTTGTAGCATCGGGGGCATCCAACCAATCTCATTGGGATTCNGGGGGGAAAAT 480 consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 CTCTTGCAACATATTCACGAAGGCTTGTACCATTATTGAAATTTTCATCAGTAGGACTAC 373 consensus_5966#1 CTCTT------------------------------------------------------- 485 consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 TCCCTGTTATCATTTCTAATAGAAGCACACCAAAGCTGTAGACATCACCCTTGGTTGATA 433 consensus_5966#1 ------------------------------------------------------------ consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 TCACTTCACTCATGCCATACTCAGGTGGGATGTATCCTATAGATCCTCTTAGGCAAGCCA 493 consensus_5966#1 ------------------------------------------------------------ consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 AAGTTTTTGAACTTCCTTCATATGCATTTGATGCATTGTTTAGACATCTTGCTAGGCCAA 553 consensus_5966#1 ------------------------------------------------------------ consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 AGTCACTGACATAAGCAATCATGTCAAGGTCCAAAAGTATATTACTTGGCTTCAAGTCAC 613 consensus_5966#1 ------------------------------------------------------------ consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 AATGTACTAACGGAGATGCACATTGGTTATGGAGATAGTCCAAACAAAATGCGACATCCA 673 consensus_5966#1 ------------------------------------------------------------ consensus_5966#2 ------------------------------------------------------------ consensus_5966#0 AAGCTATATTGATTCTTTGATTAAAAGTCAGAGTTTTCCTCTCACTATGTTCATGGGC 731 consensus_5966#1 ---------------------------------------------------------- consensus_5966#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||