cluster # 5972

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Oryza sativa
cluster # 5972 cluster # 5972 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5972#0 length = 673 sequences # 1

consensus_5972#1 length = 503 sequences # 2

consensusID : consensus_5972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC]

[+] EMBL BI305893             [GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC]




>consensus_5972#0
GAGCGGCCGCTCCAACATCAGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGA
TTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCT
GCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGT
AACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGG
AGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGT
TTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATA
GAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATG
GTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCG
CTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCT
TTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTCACAGAAGATCAGGGTCGGCCAG
CGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCCTTGCGCATCCCANGTTTCAGAA
CCCGTCGACTCGC

consensusID : consensus_5972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 503
fasta sequence

                              [CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGCGTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCNACCTATTTAAAGTT]

[-] EMBL BE230638             [CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGCGTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCNACCTATTTAAAGTT]
[-] EMBL BE230008             [                                                                                                                TCGGCGTGAACGCGCCGGGCACCGCGAACAGCACCGCCTTCNTG CCGCCGTCAGCTCCGCCACCGTCACCGTCTTCAGCTCCCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCGCGCCGTCCTACCTATTTAAAGTT]




>consensus_5972#1
CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGC
GTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTG
AACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTC
ACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCC
ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT
CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG
TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC
TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG
CGCCGTCCNACCTATTTAAAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5972#0      ------------------------------------------------------------
consensus_5972#1      CGCGGGCATCACGAACGCGTCGTTCACCGACACGCAGGCGATGGCGTCCACCCCCTTGGC 60
                                                                                  

consensus_5972#0      ------------------------------------------------------------
consensus_5972#1      GTGGAGCTCCCCGGCCTTCTCGATGAACCCCGGGAGGTGTTCTGNGAGCACGTCGGCGTG 120
                                                                                  

consensus_5972#0      ------------------------------------------------------------
consensus_5972#1      AACGCGCCGGGCACCGCGAACAGCACCGCCTTCCTGCCCGCCGTCAGCTCCGCCACCGTC 180
                                                                                  

consensus_5972#0      ---------------------GAGCGGCCGCTCCAACATCA-GTCGCGCGCTTCAGCGCC 38
consensus_5972#1      ACCGTCTTCAGCTCGCCGTCCGCCGGGTCGAAGTAGGACAGCGTCGCGCGCTTCAGCGCC 240
                                           *   ** **    *  *    ******************

consensus_5972#0      ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT 98
consensus_5972#1      ATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTT 300
                      ************************************************************

consensus_5972#0      CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG 158
consensus_5972#1      CGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGG 360
                      ************************************************************

consensus_5972#0      TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC 218
consensus_5972#1      TTAGCGCGCAGTTCGGCACCGTAACCAGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGC 420
                      ************************************************************

consensus_5972#0      TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG 278
consensus_5972#1      TTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGGCGCGGCTCACCGGAGCAGCCG 480
                      ************************************************************

consensus_5972#0      CGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTC 338
consensus_5972#1      CGCCGTCCNACCTATTTAAAGTT------------------------------------- 503
                      ******** **************                                     

consensus_5972#0      TAATCATTGGCTTTACCCGATAGAACTCGTAATGGGCTCAGCTATCCTGAGGGAAACTTC 398
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      GGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACG 458
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      AACGATTTGCACGTCAGTATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCC 518
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      GCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCGTGCTCCAACTCGAACCCTTC 578
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      ACAGAAGATCAGGGTCGGCCAGCGGTGCGGCCCGTGAGGGCCTCCCGCTCGTCAGCTTCC 638
consensus_5972#1      ------------------------------------------------------------
                                                                                  

consensus_5972#0      TTGCGCATCCCANGTTTCAGAACCCGTCGACTCGC 673
consensus_5972#1      -----------------------------------