cluster # 5977

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Oryza sativa
cluster # 5977 cluster # 5977 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5977#0 length = 606 sequences # 2

consensus_5977#1 length = 151 sequences # 1

consensusID : consensus_5977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 606
fasta sequence

                              [TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTAGCCTTCATATCTTGTTCTCTTGATT-AAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTCTTCGCC]

[+] EMBL CA760795             [TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTAGCCTTCATATCTTGTTCTCTTGATT AAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTCTTCGCC]
[-] EMBL AA752487             [                                                                                                                                                                                                                                                                CTCTTGATTGAAAAACRCCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATctcg                                                                                                                                                                                                       ]




>consensus_5977#0
TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCAT
CCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTC
GACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTG
GATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTA
GCCTTCATATCTTGTTCTCTTGATTAAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAA
AGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCA
AGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCC
TTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTA
CACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCC
ACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTC
TTCGCC

consensusID : consensus_5977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence

                              [TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTGCAATAAGACATACTCCTTCAGTCCAGTCA]

[-] EMBL CF305293             [TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTGCAATAAGACATACTCCTTCAGTCCAGTCA]




>consensus_5977#1
TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC
ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC
TGCAATAAGACATACTCCTTCAGTCCAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5977#0      --TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC 58
consensus_5977#1      TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC 60
                        ****    **************************************************

consensus_5977#0      ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC 118
consensus_5977#1      ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC 120
                      ************************************************************

consensus_5977#0      TCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGT 178
consensus_5977#1      TGCAATAAGACATACTCCTTCAGTCCAGTCA----------------------------- 151
                      *  * * **    * *     ***  ***                               

consensus_5977#0      TGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTG 238
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      TAGCCTTCATATCTTGTTCTCTTGATTAAAAACAGCGGAGTTCGTTTGCGTATCAAGGAG 298
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      AAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGG 358
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      CAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTT 418
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      CCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACAC 478
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      TACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATC 538
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      CCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTG 598
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      TCTTCGCC 606
consensus_5977#1      --------