Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5977 cluster # 5977       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5977#0 length = 606 sequences # 2  
consensus_5977#1 length = 151 sequences # 1  

consensusID : consensus_5977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 606
fasta sequence
                              [TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTAGCCTTCATATCTTGTTCTCTTGATT-AAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTCTTCGCC]

[+] EMBL CA760795             [TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTAGCCTTCATATCTTGTTCTCTTGATT AAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTCTTCGCC]
[-] EMBL AA752487             [                                                                                                                                                                                                                                                                CTCTTGATTGAAAAACRCCGGAGTTCGTTTGCGTATCAAGGAGAAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATctcg                                                                                                                                                                                                       ]


>consensus_5977#0 TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCAT CCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTC GACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGTTG GATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTGTA GCCTTCATATCTTGTTCTCTTGATTAAAAACAGCGGAGTTCGTTTGCGTATCAAGGAGAA AGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGGCA AGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTTCC TTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACACTA CACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATCCC ACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTGTC TTCGCC



consensusID : consensus_5977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence
                              [TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTGCAATAAGACATACTCCTTCAGTCCAGTCA]

[-] EMBL CF305293             [TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGCATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCCTGCAATAAGACATACTCCTTCAGTCCAGTCA]


>consensus_5977#1 TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC TGCAATAAGACATACTCCTTCAGTCCAGTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5977#0      --TTTTAGAGTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC 58
consensus_5977#1      TTTTTTTTTTTAGTAGGGCGGCATGGCATGGATTATCACTGGAAACAGCTCTCCAAGTGC 60
                        ****    **************************************************

consensus_5977#0      ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC 118
consensus_5977#1      ATCCTAATTAGCATTAATTTAACAGTGCTAGACAAACTTAATGCGTGCTTCATTGCTGCC 120
                      ************************************************************

consensus_5977#0      TCGACTTAGTTGCATTTGGAGAGTGTAGTATCCATCATCAAATGATTAATTTGCCGTGGT 178
consensus_5977#1      TGCAATAAGACATACTCCTTCAGTCCAGTCA----------------------------- 151
                      *  * * **    * *     ***  ***                               

consensus_5977#0      TGGATCGCCCCGAAGGTGACATGTATTAAGAACAAAAGCATCGATCGAGAAGCATCGCTG 238
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      TAGCCTTCATATCTTGTTCTCTTGATTAAAAACAGCGGAGTTCGTTTGCGTATCAAGGAG 298
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      AAAGATGACTTCAGACACCTCTGAATTCAGAAATAAATGCGGCCCGCGGTTGAGGGTGGG 358
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      CAAGGGTCCCCTCTTACTGCTTGGGCAGATCCAATTTCATTTCATTCTGGATTATATTTT 418
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      CCTTTACTGAAGATGGTACAGATCTTGCTGTCAGAGGCGGTCTATTGTAATGTGCTACAC 478
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      TACACACTTGCATCTTTTTTGAGGTGCCACTGAATCACTGATTGAATTGTACGTATGATC 538
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      CCACTGCAGGGAAAAGAAACAGCTGCATGGGGGTTGGTGAGCATACTACTCAAACCCTTG 598
consensus_5977#1      ------------------------------------------------------------
                                                                                  

consensus_5977#0      TCTTCGCC 606
consensus_5977#1      --------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)