These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence [ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAGCCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACCCCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGGGGCCGAGGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGCTACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCGGAGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCCGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTAGCTAATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACCTTGTGTGGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAAGCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK108064 [ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAGCCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACCCCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGGGGCCGAGGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGCTACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCGGAGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCCGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTAGCTAATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACCTTGTGTGGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAAGCAATAAAGATCCT ] [+] EMBL AU182568 [ CATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTGTGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATATCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAAAAGAAAGCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [TCTGAATGCTAATTCTTGTATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGATATTGTAGTTGGCAATTCGATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATTTTCTCTTTGTACAGTTGGGGTGTCTAATGTTGATTGTATCGTTGGTTGGTTGCTTTATTTTTCTGGATAAAAAAGAATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTGTTCCTGCAGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAAAGGAGACGATGTACCCTGTGTGGCATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTCTA] [+] EMBL CA753504 [TCTGAATGCTAATTCTTGTATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGATATTGTAGTTGGCAATTCGATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATTTTCTCTTTGTACAGTTGGGGTGTCTAATGTTGATTGTATCGTTGGTTGGTTGCTTTATTTTTCTGGATAAAAAAGAATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTGTTCCTGCAGCACTCGAAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGAGAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAGACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAGTATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATACATAATAACTCGCGCTCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAAAGGAGACGATGTACCCTGTGTGGCATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5979#0 ACCTCACTCTCCCATCCCCCTTCTGTTCCACGACACGGCCTGCCCACACGGCACGGTAAG 60 consensus_5979#1 ------------------------------------------------------------ consensus_5979#0 CCCAACCCAAGATGGAAGAACCCGCCGCCGCCGCCGCCTTTCCCGATCCGCCGGAGGACC 120 consensus_5979#1 ----------------------------------------TCTGAAT--GCTAATTCTTG 18 ** ** ** consensus_5979#0 CCTCCCCCTCCCCCTCCTCCGCGCCTTCTCCGGCCGCCGCGGCGCCTCCTCCGG-GGCCG 179 consensus_5979#1 TATGTTAGTAGTTTGCATCCGGACATGGTGCCCTTATTTTGATATTGTAGTTGGCAATTC 78 * * * **** * * * * * ** consensus_5979#0 AGGGAGCTGGCGGCGGCGATGGAGGCGGTGGAGCGGGACGTCGCCGCCATCTCCGACAGC 239 consensus_5979#1 GATCATTTCGCCAGGTTTGCTTGCGCATTGGACTGTCATATTTTCTCTTTGTACAGTTGG 138 * * ** * ** **** * * * * * * * * * consensus_5979#0 TACGCCTCCCTCTTCGCCTCCCTCCGCGTCGCCCTCGCCAACGTCACCTCGACGTCGGCG 299 consensus_5979#1 GGTGTCTAATGTTGATTGTATCGTTGGTTGG---TTGCTTTATTTTTCTGGATAAAAAAG 195 * ** * * * * * * * ** * ** ** * consensus_5979#0 GAGAACATGGAGTGCCTGGGAGACGTCGTCGGCCGCCTCCAAGAATCC-----GCACTCG 354 consensus_5979#1 AATGATTAGATTCGACCAGGTGGCGATTTTTACCTTTTTACTCTGTTCCTGCAGCACTCG 255 * * * * * ** * ** * ** * * * ******* consensus_5979#0 AAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGA 414 consensus_5979#1 AAGCTTCTTCGAAAGGAAATAAGTACATCAATTCGTGCTTGAGGTTGAATGAGGAAATGA 315 ************************************************************ consensus_5979#0 GAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAG 474 consensus_5979#1 GAGGTCTGGAAAGCCTAGCCATGCAACTAAAGATTTTACGGAAGAATGTTGATTCACTAG 375 ************************************************************ consensus_5979#0 ACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAG 534 consensus_5979#1 ACTTGGCTGTCAATCAGTTGCTCCGCCTCCCCTAGTCAGTTGCTGTTATCCAGTAGGCAG 435 ************************************************************ consensus_5979#0 TAGCTAATGCAAGGAACATGTAATGACATTGTTTCAGCAATTATACATAATAACTCGCGC 594 consensus_5979#1 TATCTAATGCAAGGAACTTGTAATGACATTGTNTCAGCAATNATACATAATAACTCGCGC 495 ** ************** ************** ******** ****************** consensus_5979#0 TCCAAGACAGCAAATGCTATAATCTGAAATGGCACACACCAGCAAAGGAGAAGATTTACC 654 consensus_5979#1 TCCAAGACAGCAAATGCTATAATCTGAAGTGGCACACACCAACAAAGGAGACGATGTACC 555 **************************** ************ ********* *** **** consensus_5979#0 TTGTGTGGCAATATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCTTCTATATGTG 714 consensus_5979#1 CTGTGTGGCA-TATAAAATACTACATCCAGTGTTTCACTTCATTTCCTCT-CTA------ 607 ********* *************************************** *** consensus_5979#0 TGCTTATGAGCTCCGTATTTGTATAGTGGGTTATTCAATTCAACCCATGGTGACATAATA 774 consensus_5979#1 ------------------------------------------------------------ consensus_5979#0 TCATTATCTGTAAATTGGCTATAAAGACTATCTTCATCACTTTGTTCTAACTCCATTCAA 834 consensus_5979#1 ------------------------------------------------------------ consensus_5979#0 AAGAAAGCAATAAAGATCCTTTTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 894 consensus_5979#1 ------------------------------------------------------------ consensus_5979#0 AAAAAAAAAAA 905 consensus_5979#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||