cluster # 5980

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Oryza sativa
cluster # 5980 cluster # 5980 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5980#0 length = 684 sequences # 2

consensus_5980#1 length = 388 sequences # 1

consensusID : consensus_5980#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence

                              [CATGGGGATCCAAGAAGTGAAGAAGAGGCTGCATCTCCATGTCGAAGCCCAACCGGAGAGCTGCAAGAAGAAGGAGCAGGCCGCCGTGTGGGTGCTCGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGATCACGGTGTCGCTGAAGCCGGTCAAGGTCAGCCGGCCAC-AGCTCGGCGACGAGGAGGAGGAGGAGGAGGTGACGACGCCGAGAGGGGAGGAGTGCAGATTACCGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTTCTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTAGTAGTAATTAATTTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAGAGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTTCCATATGATTCCATCCCTTTTGATTGATCATTTCTTCAAGAATTAATCAAGAGGCATTTGTAAAAAAAAAAAANNAAAAAAANN]

[+] EMBL AK062905             [CATGGGGATCCAAGAAGTGAAGAAGAGGCTGCATCTCCATGTCGAAGCCCAACCGGAGAGCTGCAAGAAGAAGGAGCAGGCCGCCGTGTGGGTGCTCGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGATCACGGTGTCGCTGAAGCCGGTCAAGGTCAGCCGGCCAC AGCTCGGCGACGAGGAGGAGGAGGAGGAGGTGACGACGCCGAGAGGGGAGGAGTGCAGATTACCGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTTCTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTAGTAGTAATTAATTTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAGAGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTTCCATATGATTCCATCCCTTTTGATTGATCATTTCTTCAAGAATTAATCAAGAGGCATTTG                        ]
[+] EMBL CA754686             [                                                                                                                                                                  aattCGG CACGAG TCGGCGAC   GAGGAGGAGGAGGAGGTGACGACGCCNAGAGGGGCGGAGTGCAGATTACCGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTTCTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTAGTAGTAATTAATTTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAGAGATCAGTGCAGCTGT AAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTTCCATATGATTCCATCCCTTTTGATTGATCATTTCTTCAAGAATTAATCAAGAGGCATTTGTAAAAAAAAAAAANNAAAAAAANN]




>consensus_5980#0
CATGGGGATCCAAGAAGTGAAGAAGAGGCTGCATCTCCATGTCGAAGCCCAACCGGAGAG
CTGCAAGAAGAAGGAGCAGGCCGCCGTGTGGGTGCTCGCCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGAGATCACGGTGTCGCTGAAGCCGGTCAAGGTCAGCCGGCCACAGCTCGG
CGACGAGGAGGAGGAGGAGGAGGTGACGACGCCGAGAGGGGAGGAGTGCAGATTACCGGC
GGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGT
CGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTT
CTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTA
GTAGTAATTAATTTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCA
AGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAG
AGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTT
CCATATGATTCCATCCCTTTTGATTGATCATTTCTTCAAGAATTAATCAAGAGGCATTTG
TAAAAAAAAAAAANNAAAAAAANN

consensusID : consensus_5980#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [CGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTTCTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTAGTAGTAATTAAATTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAGAGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTTCCATATGAAAAAAAAAAAAAAAAA]

[+] EMBL AU182570             [CGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTTCTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTAGTAGTAATTAAATTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAGAGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTTCCATATGAAAAAAAAAAAAAAAAA]




>consensus_5980#1
CGGCGGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGA
TCGTCGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGG
AGTTCTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAA
ATTAGTAGTAATTAAATTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGA
TCCAAGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAG
TGAGAGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTG
ATTTCCATATGAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5980#0      CATGGGGATCCAAGAAGTGAAGAAGAGGCTGCATCTCCATGTCGAAGCCCAACCGGAGAG 60
consensus_5980#1      ------------------------------------------------------------
                                                                                  

consensus_5980#0      CTGCAAGAAGAAGGAGCAGGCCGCCGTGTGGGTGCTCGCCGGCGGCGGCGGCGGCGGCGG 120
consensus_5980#1      ------------------------------------------------------------
                                                                                  

consensus_5980#0      CGGCGGCGGCGAGATCACGGTGTCGCTGAAGCCGGTCAAGGTCAGCCGGCCACAGCTCGG 180
consensus_5980#1      ------------------------------------------------------------
                                                                                  

consensus_5980#0      CGACGAGGAGGAGGAGGAGGAGGTGACGACGCCGAGAGGGGAGGAGTGCAGATTACCGGC 240
consensus_5980#1      --------------------------------------------------------CGGC 4
                                                                              ****

consensus_5980#0      GGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGT 300
consensus_5980#1      GGAGGCGGCGACGTGCCCGCCGGCGCCCAAGAAGCCGAGGACGGCGGCGGTGGCGATCGT 64
                      ************************************************************

consensus_5980#0      CGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTT 360
consensus_5980#1      CGCCGGCGGCGGCCGGCGGTGCAACTGCTGCGACGACGACGGCGGCGACTCGCTGGAGTT 124
                      ************************************************************

consensus_5980#0      CTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTA 420
consensus_5980#1      CTTCCGCGTGCCGGCGGATTTGGAGGCCGTCTTTGCCAACCGAGTTGCAAAGGCAAATTA 184
                      ************************************************************

consensus_5980#0      GTAGTAATTAATTTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCA 480
consensus_5980#1      GTAGTAATTAAATTCATAGAGAGATAAATTCGTCTTGAATTTTAAGTGTAATTTGATCCA 244
                      *********** ************************************************

consensus_5980#0      AGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAG 540
consensus_5980#1      AGTCTAGCTCTGAAGATCAGTGCAATTAATGGTGTGTGCATGCATGGGTGAGTGAGTGAG 304
                      ************************************************************

consensus_5980#0      AGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTT 600
consensus_5980#1      AGATCAGTGCAGCTGTAAAAAAAAGTTTCTCTTTGTAGCACATGATAGTGTGAGTGATTT 364
                      ************************************************************

consensus_5980#0      CCATATGATTCCATCCCTTTTGATTGATCATTTCTTCAAGAATTAATCAAGAGGCATTTG 660
consensus_5980#1      CCATATGAAAAAAAAAAAAAAAAA------------------------------------ 388
                      ********    *         *                                     

consensus_5980#0      TAAAAAAAAAAAANNAAAAAAANN 684
consensus_5980#1      ------------------------