These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1112 fasta sequence [AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCTCGTCGCTGCTGCTGCTGCTGATCCACAAGCGTTCGTCGGAGATGAACGACCTGTTCTCGTCGAGCTCGTTCAAGAAGTATGCGGACGCGAGCCCGGCGAGCGGCGTCGGCGGCAGCGACATGGAGGCCGGCGGCGAGGGCGTGGTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGACATGAAGGGGCTGGAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACGGCGCACGACGCCCGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCCGCCGCGCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCCACCTCCCGCAAGGTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGGACGAGGATGGCGGCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGGGAGAAGGCGGAGGACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCGATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCACGACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTGTTCCTCGACATGGCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAGAGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTCATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTCATTCATCATTTCCTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTACTATTTTTTTTCTCCATCATGTATGTTAATTTC] [+] EMBL AK107080 [AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCTCGTCGCTGCTGCTGCTGCTGATCCACAAGCGTTCGTCGGAGATGAACGACCTGTTCTCGTCGAGCTCGTTCAAGAAGTATGCGGACGCGAGCCCGGCGAGCGGCGTCGGCGGCAGCGACATGGAGGCCGGCGGCGAGGGCGTGGTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGACATGAAGGGGCTGGAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACGGCGCACGACGCCCGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCCGCCGCGCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCCACCTCCCGCAAGGTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGGACGAGGATGGCGGCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGGGAGAAGGCGGAGGACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCGATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCACGACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTGTTCCTCGACATGGCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCGCACGCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAGAGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTCATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTCATTCATCATTTCCTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTACTATTTTTTTTCTCCATCATGTATGTTAATTTC] consensusID : consensus_5986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence [CCGACCCCTTCAACTCCGCGTCTCCTCCTCCTCCCCCCTCTTAACTCCTCCCTCCTCCCGATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGGGCGAGCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAGGCCAAGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTCGTCCCCGGGAGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCCGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCCGAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAGGCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATCGCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGCGCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCCGTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCCTCCCCATCGTGCTCAAGTTCGTCAACAACA] [+] EMBL CB663201 [CCGACCCCTTCAACTCCGCGTCTCCTCCTCCTCCCCCCTCTTAACTCCTCCCTCCTCCCGATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGGGCGAGCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAGGCCAAGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTCGTCCCCGGGAGCGGCCCGGGCTCC ] [+] EMBL AK065950 [ ATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGCGGGGGCGAGCCTTGATAGGTTCTTCGAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAAGAAGGCCAAGGTGGTGAAGCTCCGCCTCGAGTCGCTCGACCGCGCCAACGCCGCCAACCGCTCCGTCCCCGGGTGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCCGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCCGAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAGGCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATCGCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGCGCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCCGTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCCTCCCCATCGTGCTCAAGTTCGTCAACAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5986#0 -----------AGCTCCCCGTCCAACCGATCGTACGTCTCCTCAGCTCATCCGCTTGCCT 49 consensus_5986#1 CCGACCCCTTCAACTCCGCGTCTCCTCC-TCCTCCCCCCTCTTAACTCCTCCCTCCTCCC 59 * **** **** * ** * * * ** * *** *** ** consensus_5986#0 CGTCG-------CTGCTGC----TGCTGCTGATCCA-----CAAGCGT-TCGTCGGAG-- 90 consensus_5986#1 GATCCAAGAAACCTGGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCC 119 ** *** ** * ** **** * ** * * * * ** consensus_5986#0 ATGAACGACCTGTTCTCGTCGAGCTCGTTCAAGAA-GTATGCGGACGCGAGCCCGGCGA- 148 consensus_5986#1 ATGAACAATCTCTTCTCT---AGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGAC 176 ****** * ** ***** ******* *** **** *** ****** consensus_5986#0 -GCGGCGTCGGC---GGCAGCGACATGGAG-----GCCGGCGGCGAGGGCGT-------G 192 consensus_5986#1 GGGGATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGTGGGG 236 * * * * *** *** * ***** **** ** ** ***** * consensus_5986#0 GTGAACCTGGACAGGTTCTTCGAGGACGTGGAGGGGGTGAAGGAGGACATGAAGGGGCTG 252 consensus_5986#1 GCGAGCCTTGATAGGTTCTTCAAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTG 296 * ** *** ** ********* *********** * * ***** ** * * *** consensus_5986#0 GAGGCGCTGTACAAGCGGCTGCAGTCGACGAACGAGGAGACGAAGACGGCGCACGACGCC 312 consensus_5986#1 GAGCGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCG 356 *** * * * * *** ** * ******* * *** ** ********* consensus_5986#0 CGCGCCGTGAAGGCCCTCCGCTCCCGCATGGACGGCGACGTCGAGCAGGTGCTCCGCCGC 372 consensus_5986#1 GCGGCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAACAAG 416 ** *** ** ** ** * ********** ******** * ** * consensus_5986#0 GCCAAGGCCGTCAAGGGCAAGCTCGAGGCCCTCGACAGAGACAACGCCACCTCCCGCAAG 432 consensus_5986#1 GCCAAGGGGGTGAAGCTCCGCCTCGAGTAGTTCGACCGCGCCAACGCCGCCAACCGCTTC 476 ******* ** *** * ****** ***** * * ******* ** **** consensus_5986#0 GTCCCCGGCTGCGGCCCCGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGC 492 consensus_5986#1 GTCCCCGGGAGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGC 536 ******** ******* ****************************************** consensus_5986#0 CTCGGCAAGAAGCTCAAGGACATCATGGACGACTTCCAGGGGCTGAGGACGAGGATGGCG 552 consensus_5986#1 CTCCGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCC 596 *** *********** *** ****** **** ** * * * ** * consensus_5986#0 GCGGAGTACAAGGAGACGGTGGCGAGGAGGTACTACACGGTGACGGGGGAGAAGGCGGAG 612 consensus_5986#1 TCCGAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGAC 656 * ****** ****** ****** ** ********** ** ** ** *** ** * ** consensus_5986#0 GACAGCACGATCGATTCGCTCATCGAGTCGGGGGAGAGCGAGTCGTTCCTGCAGAAGGCG 672 consensus_5986#1 GAGGCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCG 716 ** *** **** *** **** * ***** * *** ********** *** consensus_5986#0 ATCCAGGAGCAAGGGCGGGGGCAGGTGATGGACACCATCTCGGAGATCCAGGAGCGGCAC 732 consensus_5986#1 ATCGCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCAC 776 *** ***** ** ** ** ***** * * * ** * ****************** consensus_5986#0 GACGCCGTCAAGGACATCGAGCGCAGCCTGCTCGACCTGCACCAGGTGTTCCTCGACATG 792 consensus_5986#1 GGCGCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATG 836 * ****** *** * ** *** ******** ** ************ ******* consensus_5986#0 GCGGCGCTCGTCGAGGCCCAGGGACACCAGCTCAACGACATCGAGAGCCACGTCGCGCAC 852 consensus_5986#1 GCCGTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGC 896 ** * *** ** * *** ***** * ****** ************ *** **** * * consensus_5986#0 GCCAGCTCCTTCGTCCGCAGGGGCACCGTCGAGCTCGAGGTGGCGCGGGAGCACCAGAAG 912 consensus_5986#1 GCGCGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAG 956 ** *********** * * *** ** **** * ********** **** ****** consensus_5986#0 AGCAGCCGCAAGTGGGCGTGTGTCGCCGTCCTCGCCGGCATCATCCTCATCGCCGTCCTC 972 consensus_5986#1 AGCACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTC 1016 **** ********** * ** ***** ** ** * ** ******** **** ** consensus_5986#0 ATCCTCCCGGTGCTCATCAACCTCCGCATCTTGACGCTCAGATGATTCATTCATCATTTC 1032 consensus_5986#1 GTCCTCCCCATCGTGCTCAAGTTCGTCAACAACA-------------------------- 1050 ******* * * **** ** ** * * consensus_5986#0 CTCCCTAGCTAACCTGCTAACTCAGATGTGTCAAATTAATTTATCTACTATTTTTTTTCT 1092 consensus_5986#1 ------------------------------------------------------------ consensus_5986#0 CCATCATGTATGTTAATTTC 1112 consensus_5986#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||