These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1882 fasta sequence [CGTTTGCTTCAACAACACATTTGCTTTGCTCGGTACATGCAGAGAGAAAAAGAAGCAATGGGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCACCGGCACCGGCGCGGCGCTACCATTCGGCGAGGCCTCGCCGTGGAGCCTGCTCGGCGGCGCGGTGGCCGCGCTGCTGCTGGTCTGGGCCGCGCAGATGCTGGAGTGGGCCTGGCTGGCCCCGCGGCGGATGGAACGGGCCCTCAGGGCCCAGGGCCTGAGGGGCACCCAGTACCGCTTCCTCCATGGCGACCTCACCGAGGACCTGCGGCTCGTCACGGCGGCCCGCTCCAAGCCCGTGCCCATGGACCGGCCCCACGACTTCATCCCGCGCGTCGCGCCTCTGCTTCACCGTGCCTTGGAGGAACACGGTAGGGTTTCTTTTACATGGTTCGGGCCAATGCCAAGGGTTACAATCATTGATCCGGACTTGGTCCGTGAAGTTCTATCGAACAAATTTGGTCACTTTGAGAAGACAAAGCTGGCCACTCGGCTTTCTAAGTTACTCGTTGGTGGGCTTGTGATCCTTCATGGTGAAAAATGGGTCAAACATAGGAGGATTATGAATCCAGCCTTTCATGCAGAAAAGCTAAAGCGGATGTTGCCAGCATTCTCCGCATCTTGTAGCGAACTAATTGGCAGATGGGAGAATGCGGTTGCTGCTTCTGTTGGAAAAGCCGAGCTGGACATTTGGCCAGATTTTCAGAATTTATCAGGAGATGTTATTTCAAGAGCAGCATTTGGTGTCAGACACCACGAAGGCAGACAAATTTTCCTACTTCAGGCCGAGCAAGCTGAACGCCTTGTTCAATCTTTCCGGAGTAATTACATCCCAGGCTTATCTCTTTTACCGACAGAAAACAACAGAAGGATGAAGGCAATAGACAGAGAGATAAAGAGTATTCTAAGAGGCATAATAGAAAAGAGGCAGAAGGCCACGAAGAACGGCGAAGCCAGCAAGGACGATCTGCTCGGCTTGCTCCTACAATCCAACATGGATTATTACAGCGACGAGGACGGCAAATCCAGCAAGGGGATGACCGTCGAGGAGATCATCGACGAATGCAAGCTGTTCTACTTCGCCGGGATGGAGACAACCGCCGTGTTGCTCACCTGGACAATGGTTGCCCTGAGCATGCACCCGGAGTGGCAGGATCGCGCCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCGTGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACGCCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCGGCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCGCGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCG-TTCGAGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTCCGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAATGAAATCGTCTGTATAGATCCGTGCATCCGGCATTCTGAATCTCTGATATCAAAGCAGAACACATTTGCTGATAAACACTGGAAGCTCCATGTTCCGGGCATCCGGCACTCTGAAATCTCAATCTCTGATATGAAAGCAGAACA] [+] EMBL AK074025 [CGTTTGCTTCAACAACACATTTGCTTTGCTCGGTACATGCAGAGAGAAAAAGAAGCAATGGGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCACCGGCACCGGCGCGGCGCTACCATTCGGCGAGGCCTCGCCGTGGAGCCTGCTCGGCGGCGCGGTGGCCGCGCTGCTGCTGGTCTGGGCCGCGCAGATGCTGGAGTGGGCCTGGCTGGCCCCGCGGCGGATGGAACGGGCCCTCAGGGCCCAGGGCCTGAGGGGCACCCAGTACCGCTTCCTCCATGGCGACCTCACCGAGGACCTGCGGCTCGTCACGGCGGCCCGCTCCAAGCCCGTGCCCATGGACCGGCCCCACGACTTCATCCCGCGCGTCGCGCCTCTGCTTCACCGTGCCTTGGAGGAACACGGTAGGGTTTCTTTTACATGGTTCGGGCCAATGCCAAGGGTTACAATCATTGATCCGGACTTGGTCCGTGAAGTTCTATCGAACAAATTTGGTCACTTTGAGAAGACAAAGCTGGCCACTCGGCTTTCTAAGTTACTCGTTGGTGGGCTTGTGATCCTTCATGGTGAAAAATGGGTCAAACATAGGAGGATTATGAATCCAGCCTTTCATGCAGAAAAGCTAAAGCGGATGTTGCCAGCATTCTCCGCATCTTGTAGCGAACTAATTGGCAGATGGGAGAATGCGGTTGCTGCTTCTGTTGGAAAAGCCGAGCTGGACATTTGGCCAGATTTTCAGAATTTATCAGGAGATGTTATTTCAAGAGCAGCATTTGGTGTCAGACACCACGAAGGCAGACAAATTTTCCTACTTCAGGCCGAGCAAGCTGAACGCCTTGTTCAATCTTTCCGGAGTAATTACATCCCAGGCTTATCTCTTTTACCGACAGAAAACAACAGAAGGATGAAGGCAATAGACAGAGAGATAAAGAGTATTCTAAGAGGCATAATAGAAAAGAGGCAGAAGGCCACGAAGAACGGCGAAGCCAGCAAGGACGATCTGCTCGGCTTGCTCCTACAATCCAACATGGATTATTACAGCGACGAGGACGGCAAATCCAGCAAGGGGATGACCGTCGAGGAGATCATCGACGAATGCAAGCTGTTCTACTTCGCCGGGATGGAGACAACCGCCGTGTTGCTCACCTGGACAATGGTTGCCCTGAGCATGCACCCGGAGTGGCAGGATCGCGCCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCGTGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACGCCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCGGCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCGCGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCG TTCGAGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTCCGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAATGAAATCGTCTGTATAGATCCGTGCATCCGGCATTCTGAATCTCTGATATCAAAGCAGAACACATTTGCTGATAAACACTGGAAGCTCCATGTTCCGGGCATCCGGCACTCTGAAATCTCAATCTCTGATATGAAAGCAGAACA] [+] EMBL AU071192 [ AGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTA CGNCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCGTGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACGCCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCGGCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCGCGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCGTTTCGAGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTCCGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAATGAAATCGTCTGTATAGATCCGTGCAT CGGCATTCTGAATCTCTGATATCAAAGCAGAACACATTTGCTGATAAAaaa ] consensusID : consensus_5989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence [AGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACCCTGCACCCGCAACACGGGGTTCCGGGTAAGCTGCGCCCACTTTGATCGTCGGGTTAGGGGAAGAAAAAAAGATGAAATGAAATGGAATCGTCTGTATTAATCCCTGCCTTCCGGCTTCTGAATCTCTGATATTAAAACAAAACACATTTGCTGGTTAACACTGGAAGCTCCCTGTTTCGGGCCTTCCGCACTCTGAAATATCAATCTCTGATATGAAAGCACAACACTATTTGCTGACAACCGCTGCTGCAGTTCCTTGCATATTTGAAGAGTATGAGTATTCCCACTCCATATCACGGGTGTTCAGCTGGTCTTCTTAAATCCTAAACTGTTAAGGGGTGTGCTTTCCCCGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA758008 [AGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACCCTGCACCCGCAACACGGGGTTCCGGGTAAGCTGCGCCCACTTTGATCGTCGGGTTAGGGGAAGAAAAAAAGATGAAATGAAATGGAATCGTCTGTATTAATCCCTGCCTTCCGGCTTCTGAATCTCTGATATTAAAACAAAACACATTTGCTGGTTAACACTGGAAGCTCCCTGTTTCGGGCCTTCCGCACTCTGAAATATCAATCTCTGATATGAAAGCACAACACTATTTGCTGACAACCGCTGCTGCAGTTCCTTGCATATTTGAAGAGTATGAGTATTCCCACTCCATATCACGGGTGTTCAGCTGGTCTTCTTAAATCCTAAACTGTTAAGGGGTGTGCTTTCCCCGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5989#0 CGTTTGCTTCAACAACACATTTGCTTTGCTCGGTACATGCAGAGAGAAAAAGAAGCAATG 60 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 GGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCACCGGCACCGGCGCGGCGCTA 120 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CCATTCGGCGAGGCCTCGCCGTGGAGCCTGCTCGGCGGCGCGGTGGCCGCGCTGCTGCTG 180 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 GTCTGGGCCGCGCAGATGCTGGAGTGGGCCTGGCTGGCCCCGCGGCGGATGGAACGGGCC 240 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CTCAGGGCCCAGGGCCTGAGGGGCACCCAGTACCGCTTCCTCCATGGCGACCTCACCGAG 300 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 GACCTGCGGCTCGTCACGGCGGCCCGCTCCAAGCCCGTGCCCATGGACCGGCCCCACGAC 360 consensus_5989#1 -------------------------------AGCTGTCGCCGGCGTACGCGCACGCGCCC 29 *** *** * ** ** * * consensus_5989#0 TTCATCCCGCGCGTCGCGCCTCTGCTTCACCGTGCCTTGGAGGAACACGGTAGGGTTTCT 420 consensus_5989#1 TACACCGTGCTGACCCTGCACCCGCAACACGGGGTTCCGGGTAAGCTGCGCCCACTTTGA 89 * ** * ** * ** * ** *** * * ** * * * *** consensus_5989#0 TTTACATGGTTCGGGCCAATGCCAAGGGTTACAATCATTGATCCGGACTTGGTC-CGTGA 479 consensus_5989#1 TCGTCG-GGTTAGGGGAAGAAAAAAAGATGAAA-----TGAAATGGAATCGTCTGTATTA 143 * * **** *** * ** * * * * *** *** * * * * consensus_5989#0 AGTTCTATCGAACAAATTTGGTCACTTTGAGAAGACAAAGCTGGCCACTCGGCTTTCTAA 539 consensus_5989#1 ATCCCTGCCTTCCGGCTTCTGAATCTCTGATAT--TAAAACAAAACAC------------ 189 * ** * * ** * ** *** * *** * *** consensus_5989#0 GTTACTCGTTGGTGGGCTTGTGATCCTTCATGGTGAAAAATGGGTCAAACATAGGAGGAT 599 consensus_5989#1 ---ATTTGCTGGTTAACACTGGAAGCTCCCTGTTT-----CGGGCCTTCCGCACT----C 237 * * * **** * ** ** * ** * *** * * * consensus_5989#0 TATGAATCCAGCCTTTCATGCAGAAAAGCTAAAGCGGATGTTGCCAGCATTCTCCGCATC 659 consensus_5989#1 TGAAATATCAATCTCTGATATGAAAGCACAACACTATTTGCTGACAACCGCTGCTGCAGT 297 * * ** ** * ** ** * * * ** ** ** * * *** consensus_5989#0 TTGTAGCGAACTAATTGGCAGATGGGAGAATGCGGTTGCTGCTTC-TGTTGGAAAAGCCG 718 consensus_5989#1 TCCTTGCA---TATTTGAAGAGTATGAGTATTC-----CCACTCCATATCACGGGTGTTC 349 * * ** ** *** * *** ** * * ** * * * * consensus_5989#0 AGCTGGACATTTGGCCAGATTTTCAGAATTTATCAGGAGATGTTATTTCAAGAGCAGCAT 778 consensus_5989#1 AGCTGGTCTTCT---TAAATCCT---AAACTGTTAAGGGGTGTGCTTTCCCC-GCGATNN 402 ****** * * * * ** * ** * * * * * *** **** ** consensus_5989#0 TTGGTGTCAGACACCACGAAGGCAGACAAATTTTCCTACTTCAGGCCGAGCAAGCTGAAC 838 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 462 consensus_5989#0 GCCTTGTTCAATCTTTCCGGAGTAATTACATCCCAGGCTTATCTCTTTTACCGACAGAAA 898 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 522 consensus_5989#0 ACAACAGAAGGATGAAGGCAATAGACAGAGAGATAAAGAGTATTCTAAGAGGCATAATAG 958 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 582 consensus_5989#0 AAAAGAGGCAGAAGGCCACGAAGAACGGCGAAGCCAGCAAGGACGATCTGCTCGGCTTGC 1018 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 642 consensus_5989#0 TCCTACAATCCAACATGGATTATTACAGCGACGAGGACGGCAAATCCAGCAAGGGGATGA 1078 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 702 consensus_5989#0 CCGTCGAGGAGATCATCGACGAATGCAAGCTGTTCTACTTCGCCGGGATGGAGACAACCG 1138 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 762 consensus_5989#0 CCGTGTTGCTCACCTGGACAATGGTTGCCCTGAGCATGCACCCGGAGTGGCAGGATCGCG 1198 consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-- 820 consensus_5989#0 CCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCC 1258 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 GCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGA 1318 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 TGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCG 1378 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 TGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACG 1438 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCG 1498 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 GCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCG 1558 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCGTTCGAGCTGT 1618 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTC 1678 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAA 1738 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 TGAAATCGTCTGTATAGATCCGTGCATCCGGCATTCTGAATCTCTGATATCAAAGCAGAA 1798 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 CACATTTGCTGATAAACACTGGAAGCTCCATGTTCCGGGCATCCGGCACTCTGAAATCTC 1858 consensus_5989#1 ------------------------------------------------------------ consensus_5989#0 AATCTCTGATATGAAAGCAGAACA 1882 consensus_5989#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||