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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1882 fasta sequence
[CGTTTGCTTCAACAACACATTTGCTTTGCTCGGTACATGCAGAGAGAAAAAGAAGCAATGGGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCACCGGCACCGGCGCGGCGCTACCATTCGGCGAGGCCTCGCCGTGGAGCCTGCTCGGCGGCGCGGTGGCCGCGCTGCTGCTGGTCTGGGCCGCGCAGATGCTGGAGTGGGCCTGGCTGGCCCCGCGGCGGATGGAACGGGCCCTCAGGGCCCAGGGCCTGAGGGGCACCCAGTACCGCTTCCTCCATGGCGACCTCACCGAGGACCTGCGGCTCGTCACGGCGGCCCGCTCCAAGCCCGTGCCCATGGACCGGCCCCACGACTTCATCCCGCGCGTCGCGCCTCTGCTTCACCGTGCCTTGGAGGAACACGGTAGGGTTTCTTTTACATGGTTCGGGCCAATGCCAAGGGTTACAATCATTGATCCGGACTTGGTCCGTGAAGTTCTATCGAACAAATTTGGTCACTTTGAGAAGACAAAGCTGGCCACTCGGCTTTCTAAGTTACTCGTTGGTGGGCTTGTGATCCTTCATGGTGAAAAATGGGTCAAACATAGGAGGATTATGAATCCAGCCTTTCATGCAGAAAAGCTAAAGCGGATGTTGCCAGCATTCTCCGCATCTTGTAGCGAACTAATTGGCAGATGGGAGAATGCGGTTGCTGCTTCTGTTGGAAAAGCCGAGCTGGACATTTGGCCAGATTTTCAGAATTTATCAGGAGATGTTATTTCAAGAGCAGCATTTGGTGTCAGACACCACGAAGGCAGACAAATTTTCCTACTTCAGGCCGAGCAAGCTGAACGCCTTGTTCAATCTTTCCGGAGTAATTACATCCCAGGCTTATCTCTTTTACCGACAGAAAACAACAGAAGGATGAAGGCAATAGACAGAGAGATAAAGAGTATTCTAAGAGGCATAATAGAAAAGAGGCAGAAGGCCACGAAGAACGGCGAAGCCAGCAAGGACGATCTGCTCGGCTTGCTCCTACAATCCAACATGGATTATTACAGCGACGAGGACGGCAAATCCAGCAAGGGGATGACCGTCGAGGAGATCATCGACGAATGCAAGCTGTTCTACTTCGCCGGGATGGAGACAACCGCCGTGTTGCTCACCTGGACAATGGTTGCCCTGAGCATGCACCCGGAGTGGCAGGATCGCGCCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCGTGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACGCCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCGGCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCGCGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCG-TTCGAGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTCCGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAATGAAATCGTCTGTATAGATCCGTGCATCCGGCATTCTGAATCTCTGATATCAAAGCAGAACACATTTGCTGATAAACACTGGAAGCTCCATGTTCCGGGCATCCGGCACTCTGAAATCTCAATCTCTGATATGAAAGCAGAACA]
[+] EMBL AK074025 [CGTTTGCTTCAACAACACATTTGCTTTGCTCGGTACATGCAGAGAGAAAAAGAAGCAATGGGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCACCGGCACCGGCGCGGCGCTACCATTCGGCGAGGCCTCGCCGTGGAGCCTGCTCGGCGGCGCGGTGGCCGCGCTGCTGCTGGTCTGGGCCGCGCAGATGCTGGAGTGGGCCTGGCTGGCCCCGCGGCGGATGGAACGGGCCCTCAGGGCCCAGGGCCTGAGGGGCACCCAGTACCGCTTCCTCCATGGCGACCTCACCGAGGACCTGCGGCTCGTCACGGCGGCCCGCTCCAAGCCCGTGCCCATGGACCGGCCCCACGACTTCATCCCGCGCGTCGCGCCTCTGCTTCACCGTGCCTTGGAGGAACACGGTAGGGTTTCTTTTACATGGTTCGGGCCAATGCCAAGGGTTACAATCATTGATCCGGACTTGGTCCGTGAAGTTCTATCGAACAAATTTGGTCACTTTGAGAAGACAAAGCTGGCCACTCGGCTTTCTAAGTTACTCGTTGGTGGGCTTGTGATCCTTCATGGTGAAAAATGGGTCAAACATAGGAGGATTATGAATCCAGCCTTTCATGCAGAAAAGCTAAAGCGGATGTTGCCAGCATTCTCCGCATCTTGTAGCGAACTAATTGGCAGATGGGAGAATGCGGTTGCTGCTTCTGTTGGAAAAGCCGAGCTGGACATTTGGCCAGATTTTCAGAATTTATCAGGAGATGTTATTTCAAGAGCAGCATTTGGTGTCAGACACCACGAAGGCAGACAAATTTTCCTACTTCAGGCCGAGCAAGCTGAACGCCTTGTTCAATCTTTCCGGAGTAATTACATCCCAGGCTTATCTCTTTTACCGACAGAAAACAACAGAAGGATGAAGGCAATAGACAGAGAGATAAAGAGTATTCTAAGAGGCATAATAGAAAAGAGGCAGAAGGCCACGAAGAACGGCGAAGCCAGCAAGGACGATCTGCTCGGCTTGCTCCTACAATCCAACATGGATTATTACAGCGACGAGGACGGCAAATCCAGCAAGGGGATGACCGTCGAGGAGATCATCGACGAATGCAAGCTGTTCTACTTCGCCGGGATGGAGACAACCGCCGTGTTGCTCACCTGGACAATGGTTGCCCTGAGCATGCACCCGGAGTGGCAGGATCGCGCCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCGTGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACGCCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCGGCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCGCGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCG TTCGAGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTCCGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAATGAAATCGTCTGTATAGATCCGTGCATCCGGCATTCTGAATCTCTGATATCAAAGCAGAACACATTTGCTGATAAACACTGGAAGCTCCATGTTCCGGGCATCCGGCACTCTGAAATCTCAATCTCTGATATGAAAGCAGAACA]
[+] EMBL AU071192 [ AGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTA CGNCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCGTGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACGCCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCGGCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCGCGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCGTTTCGAGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTCCGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAATGAAATCGTCTGTATAGATCCGTGCAT CGGCATTCTGAATCTCTGATATCAAAGCAGAACACATTTGCTGATAAAaaa ]
consensusID : consensus_5989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[AGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACCCTGCACCCGCAACACGGGGTTCCGGGTAAGCTGCGCCCACTTTGATCGTCGGGTTAGGGGAAGAAAAAAAGATGAAATGAAATGGAATCGTCTGTATTAATCCCTGCCTTCCGGCTTCTGAATCTCTGATATTAAAACAAAACACATTTGCTGGTTAACACTGGAAGCTCCCTGTTTCGGGCCTTCCGCACTCTGAAATATCAATCTCTGATATGAAAGCACAACACTATTTGCTGACAACCGCTGCTGCAGTTCCTTGCATATTTGAAGAGTATGAGTATTCCCACTCCATATCACGGGTGTTCAGCTGGTCTTCTTAAATCCTAAACTGTTAAGGGGTGTGCTTTCCCCGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA758008 [AGCTGTCGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACCCTGCACCCGCAACACGGGGTTCCGGGTAAGCTGCGCCCACTTTGATCGTCGGGTTAGGGGAAGAAAAAAAGATGAAATGAAATGGAATCGTCTGTATTAATCCCTGCCTTCCGGCTTCTGAATCTCTGATATTAAAACAAAACACATTTGCTGGTTAACACTGGAAGCTCCCTGTTTCGGGCCTTCCGCACTCTGAAATATCAATCTCTGATATGAAAGCACAACACTATTTGCTGACAACCGCTGCTGCAGTTCCTTGCATATTTGAAGAGTATGAGTATTCCCACTCCATATCACGGGTGTTCAGCTGGTCTTCTTAAATCCTAAACTGTTAAGGGGTGTGCTTTCCCCGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5989#0 CGTTTGCTTCAACAACACATTTGCTTTGCTCGGTACATGCAGAGAGAAAAAGAAGCAATG 60
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 GGCATCGGCATCGGCATCGGCATCGGCATCGGCATCGGCACCGGCACCGGCGCGGCGCTA 120
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CCATTCGGCGAGGCCTCGCCGTGGAGCCTGCTCGGCGGCGCGGTGGCCGCGCTGCTGCTG 180
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 GTCTGGGCCGCGCAGATGCTGGAGTGGGCCTGGCTGGCCCCGCGGCGGATGGAACGGGCC 240
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CTCAGGGCCCAGGGCCTGAGGGGCACCCAGTACCGCTTCCTCCATGGCGACCTCACCGAG 300
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 GACCTGCGGCTCGTCACGGCGGCCCGCTCCAAGCCCGTGCCCATGGACCGGCCCCACGAC 360
consensus_5989#1 -------------------------------AGCTGTCGCCGGCGTACGCGCACGCGCCC 29
*** *** * ** ** * *
consensus_5989#0 TTCATCCCGCGCGTCGCGCCTCTGCTTCACCGTGCCTTGGAGGAACACGGTAGGGTTTCT 420
consensus_5989#1 TACACCGTGCTGACCCTGCACCCGCAACACGGGGTTCCGGGTAAGCTGCGCCCACTTTGA 89
* ** * ** * ** * ** *** * * ** * * * ***
consensus_5989#0 TTTACATGGTTCGGGCCAATGCCAAGGGTTACAATCATTGATCCGGACTTGGTC-CGTGA 479
consensus_5989#1 TCGTCG-GGTTAGGGGAAGAAAAAAAGATGAAA-----TGAAATGGAATCGTCTGTATTA 143
* * **** *** * ** * * * * *** *** * * * *
consensus_5989#0 AGTTCTATCGAACAAATTTGGTCACTTTGAGAAGACAAAGCTGGCCACTCGGCTTTCTAA 539
consensus_5989#1 ATCCCTGCCTTCCGGCTTCTGAATCTCTGATAT--TAAAACAAAACAC------------ 189
* ** * * ** * ** *** * *** * ***
consensus_5989#0 GTTACTCGTTGGTGGGCTTGTGATCCTTCATGGTGAAAAATGGGTCAAACATAGGAGGAT 599
consensus_5989#1 ---ATTTGCTGGTTAACACTGGAAGCTCCCTGTTT-----CGGGCCTTCCGCACT----C 237
* * * **** * ** ** * ** * *** * * *
consensus_5989#0 TATGAATCCAGCCTTTCATGCAGAAAAGCTAAAGCGGATGTTGCCAGCATTCTCCGCATC 659
consensus_5989#1 TGAAATATCAATCTCTGATATGAAAGCACAACACTATTTGCTGACAACCGCTGCTGCAGT 297
* * ** ** * ** ** * * * ** ** ** * * ***
consensus_5989#0 TTGTAGCGAACTAATTGGCAGATGGGAGAATGCGGTTGCTGCTTC-TGTTGGAAAAGCCG 718
consensus_5989#1 TCCTTGCA---TATTTGAAGAGTATGAGTATTC-----CCACTCCATATCACGGGTGTTC 349
* * ** ** *** * *** ** * * ** * * * *
consensus_5989#0 AGCTGGACATTTGGCCAGATTTTCAGAATTTATCAGGAGATGTTATTTCAAGAGCAGCAT 778
consensus_5989#1 AGCTGGTCTTCT---TAAATCCT---AAACTGTTAAGGGGTGTGCTTTCCCC-GCGATNN 402
****** * * * * ** * ** * * * * * *** **** **
consensus_5989#0 TTGGTGTCAGACACCACGAAGGCAGACAAATTTTCCTACTTCAGGCCGAGCAAGCTGAAC 838
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 462
consensus_5989#0 GCCTTGTTCAATCTTTCCGGAGTAATTACATCCCAGGCTTATCTCTTTTACCGACAGAAA 898
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 522
consensus_5989#0 ACAACAGAAGGATGAAGGCAATAGACAGAGAGATAAAGAGTATTCTAAGAGGCATAATAG 958
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 582
consensus_5989#0 AAAAGAGGCAGAAGGCCACGAAGAACGGCGAAGCCAGCAAGGACGATCTGCTCGGCTTGC 1018
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 642
consensus_5989#0 TCCTACAATCCAACATGGATTATTACAGCGACGAGGACGGCAAATCCAGCAAGGGGATGA 1078
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 702
consensus_5989#0 CCGTCGAGGAGATCATCGACGAATGCAAGCTGTTCTACTTCGCCGGGATGGAGACAACCG 1138
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 762
consensus_5989#0 CCGTGTTGCTCACCTGGACAATGGTTGCCCTGAGCATGCACCCGGAGTGGCAGGATCGCG 1198
consensus_5989#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-- 820
consensus_5989#0 CCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCC 1258
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 GCCTGAAAGTCGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGA 1318
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 TGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACCCGGCGGGCG 1378
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 TGATGCTGTCGCTGCCCGTGCTGTTCATCCACCGCGACGCCGCCGCGTGGGGGCACGACG 1438
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CCGGCGAGTTCGACCCGGGGAGGTTCGCGGAGGGCGTGGCCAGGGCGTGCAAGGACCCCG 1498
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 GCGCCGGCGCGTTCTTCCCGTTCAGCTGGGGCCCGCGCATCTGCATCGGCCAGAACTTCG 1558
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CGCTGCTGGAGGCCAAGGTGGCGCTCGGCATGATCCTGCAGCGCTTCGCGTTCGAGCTGT 1618
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CGCCGGCGTACGCGCACGCGCCCTACACCGTGCTGACGCTGCACCCGCAGCACGGCGTTC 1678
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CGGTTAGGCTGCGCCGACTCTGATCGTCGGGTTAGGGAAAGAAAAAAAGATGAAATGAAA 1738
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 TGAAATCGTCTGTATAGATCCGTGCATCCGGCATTCTGAATCTCTGATATCAAAGCAGAA 1798
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 CACATTTGCTGATAAACACTGGAAGCTCCATGTTCCGGGCATCCGGCACTCTGAAATCTC 1858
consensus_5989#1 ------------------------------------------------------------
consensus_5989#0 AATCTCTGATATGAAAGCAGAACA 1882
consensus_5989#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||