cluster # 6004

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Oryza sativa
cluster # 6004 cluster # 6004 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6004#0 length = 459 sequences # 2

consensus_6004#1 length = 305 sequences # 1

consensusID : consensus_6004#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 459
fasta sequence

                              [ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCTGCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAATCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGCCAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACTCTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA]

[+] EMBL AU096949             [ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCTGCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAA                                                                                                                                                                                    ]
[+] EMBL AU068171             [                                                          CTG CCGCTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGCCAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACTCTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA]




>consensus_6004#0
ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCT
GCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTC
TGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACA
TGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAA
GTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAATCACTGGACGAAACATGCACT
GAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGC
CAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACT
CTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA

consensusID : consensus_6004#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [CTGCCGTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAAAAAAA]

[+] EMBL CA999392             [CTGCCGTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTCTGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATACATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAAGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACTGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAAAAAAA]




>consensus_6004#1
CTGCCGTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTT
CTGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATAC
ATGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATA
AGTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCAC
TGAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6004#0      ATGGTAGATGATTACGCTGCACTGTTGATACCNCCAAGATATTCATCAAATTTTGATCCT 60
consensus_6004#1      ----------------------------------------------------------CT 2
                                                                                **

consensus_6004#0      GCCCGCTGATCCCCGACCATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTC 120
consensus_6004#1      GCC-GTTGATCCCGAACAATTTTGAGCCCCATAGCTCTCTTCTCATAGTTTTTCTTCTTC 61
                      *** * *******  ** ******************************************

consensus_6004#0      TGATGAGGCTTTTCTGTTTTTCGCTGTTTTTCCCTCACATGGTCCATTTTGTTGTATACA 180
consensus_6004#1      TGATGAGGCTTTTCTGTTCTTCGCTGTTTTTCCCTCACATGGCCCATTTTGTTGTATACA 121
                      ****************** *********************** *****************

consensus_6004#0      TGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAA 240
consensus_6004#1      TGCGTGGATTTGTTCCACCTAGATTGTAGATACGCGGGGTGAGATCCCGACAGTCAATAA 181
                      ************************************************************

consensus_6004#0      GTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAAAAATCACTGGACGAAACATGCACT 300
consensus_6004#1      GTTTCAGTCAATCAAAAGTTCGCGACATTAGTTCAATCTTCACTGGACGAAACATGCACT 241
                      ************************************   *********************

consensus_6004#0      GAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTTCCACTTAGATCACAGC 360
consensus_6004#1      GAACTGATAATTTCTTTATCTACGAAGATGCAGCTGTCGCCTTGCCACTTAAAAAAAAAA 301
                      ******************************************* ******* *  * *  

consensus_6004#0      CAACCCTCTAACACATGCATCTGTTTTTCCTTGTCTGCGAGCGTGCGACAATGTGATACT 420
consensus_6004#1      AAAA-------------------------------------------------------- 305
                       **                                                         

consensus_6004#0      CTGTTTTTGTCATATTCCAGTTTTGATCCGTCAAAAAAA 459
consensus_6004#1      ---------------------------------------