These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1100 fasta sequence [ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAATTAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGCTCCATCTACTGATGTAGCAGTTCAAGAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTTTTTCTTGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCTAGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGTAACTTTCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATTGCTTCGGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGATATCTGCAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTGGATTCATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGTTTCATTGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCAGAAATCTTCCAGCTTGCTGTCATCA] [+] EMBL AK059327 [ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAATTAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGCTCCATCTACTGATGTAGCAGTTCAAGAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTTTTTCTTGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCTAGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGTAACTTTCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATTGCTTCGGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGATATCTGCAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTGGATTCATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGTTTCATTGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCAGAAATCTTCCAGCTTGCTGTCATCA] consensusID : consensus_6017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGTAAGCTAATCTGTGAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCTACATCTTGTATCTTTAAGATTAACCTATCAATCCTAAATCTT] [+] EMBL CF305228 [AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCACCTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCCAAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGGTGCCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTGCTCATGGCCGTTTGCCTATGGGTTATCAGAAGTATCGGGGTAAGCTAATCTGTGAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCTACATCTTGTATCTTTAAGATTAACCTATCAATCCTAAATCTT] consensusID : consensus_6017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGNTGCAATAAACCATTCCTGGGTTNCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTTCTCATGGCCGNTTGCCTATGGGGTTATCAAGAAGTATCGGGGCTCCATCTACTTGATGTAGAAGTTCAAAGAGTTNAGTCATACAACCGCCGAAGT] [+] EMBL OSS13769A [GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCCGCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACAGGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAACTACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGGGCAGNTGCAATAAACCATTCCTGGGTTNCTGAACATCAGGACATTGCAATGGTGCTAGTGTTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGAGTTGGATTTCTCATGGCCGNTTGCCTATGGGGTTATCAAGAAGTATCGGGGCTCCATCTACTTGATGTAGAAGTTCAAAGAGTTNAGTCATACAACCGCCGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6017#0 ACGCGCACTCTCACTCACACGGAGAGAGAGAGAGAGAGAGACTAGACTAGTAGTACCAAT 60 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 TAATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCAC 120 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 -AATGGCGGCGCTCTCCTCCTGCTTACTCGCCGCCGTCCGACCTCATCCTCCACCTCCAC 59 consensus_6017#0 CTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCC 180 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 CTCGACCGCTCTCCCCTTCCTTCATCCCCTCTGCCCTCCGCCACCGCCACCGCCTCAGCC 119 consensus_6017#0 AAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGG-TGCCGCTTCTCC 239 consensus_6017#2 --------------------------GTGGGAGAGAGGTGGCGAGGNGCGGCGCTTCTCC 34 consensus_6017#1 AAGCGCCGCCCCTCGCCACCTCTCTCCCACGACCACGACCACCATGG-TGCCGCTTCTCC 178 ** * * * * * ********* consensus_6017#0 GCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACA 299 consensus_6017#2 GCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACA 94 consensus_6017#1 GCCTCCTCGCCGCCACCGCCACCCGACGACCCTGACGACTACGAGCTGTTGGACACGACA 238 ************************************************************ consensus_6017#0 GGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAAC 359 consensus_6017#2 GGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAAC 154 consensus_6017#1 GGAAATTGTGATCCTTTATGCTCCGTTGATGAAGTTAGCTCACAGTATTTTGAAGCTAAC 298 ************************************************************ consensus_6017#0 TACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGG 419 consensus_6017#2 TACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGG 214 consensus_6017#1 TACAAGCCAAAAAATGATCTTCTTAAAGCTTTAACTATAATAGCAACAGCTTTGGCTGGG 358 ************************************************************ consensus_6017#0 GCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTG 479 consensus_6017#2 GCAGNTGCAATAAACCATTCCTGGGTTNCTGAACATCAGGACATTGCAATGGTGCTAGTG 274 consensus_6017#1 GCAGCTGCAATAAACCATTCCTGGGTTGCTGAACATCAGGACATTGCAATGGTGCTAGTG 418 **** ********************** ******************************** consensus_6017#0 TTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGA 539 consensus_6017#2 TTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGA 334 consensus_6017#1 TTTGCTCTCGGTTATGCAGGTATCATATTTGAGGAATCACTAGCGTTTAACAAAAGTGGA 478 ************************************************************ consensus_6017#0 GTTGGATTGCTCATGGCCGTTTGCCTATGGG-TTATCA-GAAGTATCGGGGCTCCATCTA 597 consensus_6017#2 GTTGGATTTCTCATGGCCGNTTGCCTATGGGGTTATCAAGAAGTATCGGGGCTCCATCTA 394 consensus_6017#1 GTTGGATTGCTCATGGCCGTTTGCCTATGGG-TTATCA-GAAGTATCGGGGT--AAGCTA 534 ******** ********** *********** ****** ************ * *** consensus_6017#0 CT-GATGTAGCAGTTCAA-GAGTTGAGTCATACAACCGCCGAAGTTAGTGAAATAGTCTT 655 consensus_6017#2 CTTGATGTAGAAGTTCAAAGAGTTNAGTCATACAACCGCCGAAGT--------------- 439 consensus_6017#1 ATCTGTGAAGTTGCCGTGAAGACTTGAACAACCCTTTCCCGATGACAAGCTATCGGTCCT 594 * ** ** * * ** * **** * consensus_6017#0 TTTCTTGCTCGGTGCAATGACCATTGTTGAGATTGTTGATGCACATCAAGGATTTAAGCT 715 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ACATCTTGTATCTTTAAGATTAACCTATCAATCCTAAATCTT------------------ 636 consensus_6017#0 AGTGACTGACAATATATCTACTCGAAATCCAAGAACTCTTCTCTGGGTGATAGGGTTTGT 775 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 AACTTTCTTCTTGAGTTCTATCCTTGACAATTTGACTTCCACTATTGTGATGGTTTCATT 835 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 GCTTCGGAAACTAGTACCTCCATCAGAGTACAGAAAATTGTTAGGCGCTGTTGTTGTGAT 895 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 ATCTGCAAATGCTGGGGGTGCATGGACACCAATTGGTGATGTGACGACCACTATGTTGTG 955 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 GATTCATGGTCAGATTACAACGTTGAACACAATGCAGGGCTTGTTTCTTCCCTCAGTTGT 1015 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 TTCATTGGCAGTTCCACTGGCTCTGATGTCCCTCACGAGTGAAGCAAATGGATCTTCTCA 1075 consensus_6017#2 ------------------------------------------------------------ consensus_6017#1 ------------------------------------------------------------ consensus_6017#0 GAAATCTTCCAGCTTGCTGTCATCA 1100 consensus_6017#2 ------------------------- consensus_6017#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||