These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2274 fasta sequence [AGCTTCCTCCACTAGTCTACCGCCGCTGCCTCCTCCTCGTCTCCTCTCCTCTCACCATCTCACCATCTCACTACCCACACTGTTCCATGGGGGCCTCAAATTGGAGGCGGCGCCGGCGGCGAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCCTTAGTTGTTTCTTCTCCTCGCTCGAGGCTGCAAGAAAATCAAGAACCCGATCGCCACGTCGAGATCAACCTCTCTCCAGGCCGGCAATGGACGGGCGCGCCGGTTGCTGCGTCCGCTTCATCGGCTGCTGCCTCGCCGCCGACGGTGACGCCGCCCTGAGCCAGAGCGCGGCCGCGCTGCACAGGATGGCGTCGGCGTTCTTGGACGCTCACGGCGAGCCCTTGGTACTCCTCGACCACCGGGTGCTCTGCTCCCATGGCGTCGCCACCGTGGGGCACAGCCAGGCCTTCGCCGCGGCGATGAGGCAGCGCAGAGAGGAGATTCCCCCTGCCCCATTCAGGATTCTGCTGCAGGAAGAATATGTCGGGTGGGCTGAAGTGGCGGCATGCGCCAATGGGAACAAGATTGTGGACAAGAAGTCCTGGAGAGCTTCGGTCAGGAACATGCTCGATGCTGTGTACAGGATGATATGTCAGGTCCTTGCCTCTGCTGTGAGATCTGTTTGGGCTATTGGCACCTATATGCTTCCTCTATCAGCTGCAGAGTTTTTCAGAAGGAGACTACCCGCATCAGCTGTGCCAGAAAAAATTAGCTGGCGGGGTGTCATTAGCACTTTCAGATTTCAAATCTTCCCTGATACCTGCGCCATAGTAGCATGCTCAGTCTGTATCGAGGCACAACACAGGCTCGAGTTTGAGCGCCTACACGGGCAAGGCACATTCATCCTCGAATTGCCTGATTCCACCAGGAAGCTGAGAAGATTCTGCCTGGAGAGAAAAGCTTGGTTTAAGGGTAAAGGGGCTCATATCGATAGCCTCCTGTCTCTGATCCAGGAGACTGGTGGAGTGCCCGCAATAAGTACAACGAACACAAGAAGCAGCCTCCTTCTGCCCCTTCACAGCTATGACTACTTCAGCCTCCGGGGGTGCTGGACAAACCTGACACCCCAGCAGGCTGCACAGCTGATCTTCACCGGTGGTCCCTGCATTGGCAGTCTCTGGGTTGATGGATCCTACACCAGCAAGCACCACTACAGCGATGACAACGATGACGATGAGGAGGACATGCTAGTGTACCGTGGCTGTGATCCCAAGAAGAAGATACACCGGGATAAGGAGACAGGCTTACATGCCGTCGTGTGTTACGCGTACCTCTTCATTGGGAAGGAGCTGCACATCCGTGTCCAGGACAATATGCCTATCTGCAGTCCCCACAACTGGATCCTTTTCCAGGCGTTTGACATGTTTTACACCCTACGAGTCATGCCCTTAGATGCTTCAAGACTGTATGATCCCTTGTAGAAGATGACAGTGCCGCCGAAGATTTCACAGAAGATAGGCAAAGACCGAGCATGGCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGATGATCCAGAAAGGGAAAGAGAAGGTCTGCTGAAGTTAGGAGCTTGCTGGTGAGCCGGTTTTATCTCTCTTGAAGGCTGTGTTCGTTCATTCTGCGCCGCTGCTCTCTTCGTCAGTATTAGCTGACTGATTGATTAGTTGTAATGCTGAATGGCGAGATGGTGTCCCCAGCATTTTGTAGAAAGACCTGATCCATCCTGTTTACGCCTTCAAGTAAACCTGGACGCTAAGCCTTTTGTCCAGAATGCATGACTGTGTGCAGACACACAATGGATCGATTTTCTCCTTTTTGTGTGTGTGTGTCGTTTCAGTCAAATTTTGGGCGTCAGGGCTGTTTGAGATTTGTTATGTGGTTTTGAGGCTTGCCTGTTTTGATTGCTACTTTGAGTTCCACGAAGTGATGAAGTAGTACATATTTATTTTATTGTGTTCTTTTTTTGCCTCTTCTGTCATTTCAACTTTATCTATGGTGATCATCTGACCAAGTACTTCTCTAGTTGTCTGGTCAGTTAATTTTTTTATTCCTGAAATGTGCTT] [+] EMBL AK101269 [AGCTTCCTCCACTAGTCTACCGCCGCTGCCTCCTCCTCGTCTCCTCTCCTCTCACCATCTCACCATCTCACTACCCACACTGTTCCATGGGGGCCTCAAATTGGAGGCGGCGCCGGCGGCGAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCCTTAGTTGTTTCTTCTCCTCGCTCGAGGCTGCAAGAAAATCAAGAACCCGATCGCCACGTCGAGATCAACCTCTCTCCAGGCCGGCAATGGACGGGCGCGCCGGTTGCTGCGTCCGCTTCATCGGCTGCTGCCTCGCCGCCGACGGTGACGCCGCCCTGAGCCAGAGCGCGGCCGCGCTGCACAGGATGGCGTCGGCGTTCTTGGACGCTCACGGCGAGCCCTTGGTACTCCTCGACCACCGGGTGCTCTGCTCCCATGGCGTCGCCACCGTGGGGCACAGCCAGGCCTTCGCCGCGGCGATGAGGCAGCGCAGAGAGGAGATTCCCCCTGCCCCATTCAGGATTCTGCTGCAGGAAGAATATGTCGGGTGGGCTGAAGTGGCGGCATGCGCCAATGGGAACAAGATTGTGGACAAGAAGTCCTGGAGAGCTTCGGTCAGGAACATGCTCGATGCTGTGTACAGGATGATATGTCAGGTCCTTGCCTCTGCTGTGAGATCTGTTTGGGCTATTGGCACCTATATGCTTCCTCTATCAGCTGCAGAGTTTTTCAGAAGGAGACTACCCGCATCAGCTGTGCCAGAAAAAATTAGCTGGCGGGGTGTCATTAGCACTTTCAGATTTCAAATCTTCCCTGATACCTGCGCCATAGTAGCATGCTCAGTCTGTATCGAGGCACAACACAGGCTCGAGTTTGAGCGCCTACACGGGCAAGGCACATTCATCCTCGAATTGCCTGATTCCACCAGGAAGCTGAGAAGATTCTGCCTGGAGAGAAAAGCTTGGTTTAAGGGTAAAGGGGCTCATATCGATAGCCTCCTGTCTCTGATCCAGGAGACTGGTGGAGTGCCCGCAATAAGTACAACGAACACAAGAAGCAGCCTCCTTCTGCCCCTTCACAGCTATGACTACTTCAGCCTCCGGGGGTGCTGGACAAACCTGACACCCCAGCAGGCTGCACAGCTGATCTTCACCGGTGGTCCCTGCATTGGCAGTCTCTGGGTTGATGGATCCTACACCAGCAAGCACCACTACAGCGATGACAACGATGACGATGAGGAGGACATGCTAGTGTACCGTGGCTGTGATCCCAAGAAGAAGATACACCGGGATAAGGAGACAGGCTTACATGCCGTCGTGTGTTACGCGTACCTCTTCATTGGGAAGGAGCTGCACATCCGTGTCCAGGACAATATGCCTATCTGCAGTCCCCACAACTGGATCCTTTTCCAGGCGTTTGACATGTTTTACACCCTACGAGTCATGCCCTTAGATGCTTCAAGACTGTATGATCCCTTGTAGAAGATGACAGTGCCGCCGAAGATTTCACAGAAGATAGGCAAAGACCGAGCATGGCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGATGATCCAGAAAGGGAAAGAGAAGGTCTGCTGAAGTTAGGAGCTTGCTGGTGAGCCGGTTTTATCTCTCTTGAAGGCTGTGTTCGTTCATTCTGCGCCGCTGCTCTCTTCGTCAGTATTAGCTGACTGATTGATTAGTTGTAATGCTGAATGGCGAGATGGTGTCCCCAGCATTTTGTAGAAAGACCTGATCCATCCTGTTTACGCCTTCAAGTAAACCTGGACGCTAAGCCTTTTGTCCAGAATGCATGACTGTGTGCAGACACACAATGGATCGATTTTCTCCTTTTTGTGTGTGTGTGTCGTTTCAGTCAAATTTTGGGCGTCAGGGCTGTTTGAGATTTGTTATGTGGTTTTGAGGCTTGCCTGTTTTGATTGCTACTTTGAGTTCCACGAAGTGATGAAGTAGTACATATTTATTTTATTGTGTTCTTTTTTTGCCTCTTCTGTCATTTCAACTTTATCTATGGTGATCATCTGACCAAGTACTTCTCTAGTTGTCTGGTCAGTTAATTTTTTTATTCCTGAAATGTGCTT] [+] EMBL OSR24101A [ gtAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCttg ] consensusID : consensus_6022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCNCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGNCTTGTCAGTGACAGCCTCCNCCCCTACTCTTCAAATTCTCCTGGGCTTCGCGCTCTCGGTCTCGGGTGGTAACGACC] [+] EMBL OSR22581A [GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACATGCTGTGGCCGGCTCGCCGCNCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAGGGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAACTGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGNCTTGTCAGTGACAGCCTCCNCCCCTACTCTTCAAATTCTCCTGGGCTTCGCGCTCTCGGTCTCGGGTGGTAACGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6022#0 AGCTTCCTCCACTAGTCTACCGCCGCTGCCTCCTCCTCGTCTCCTCTCCTCTCACCATCT 60 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CACCATCTCACTACCCACACTGTTCCATGGGGGCCTCAAATTGGAGGCGGCGCCGGCGGC 120 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACAT 180 consensus_6022#1 GAGGAAGGTATCGAAGTCGAAGCCACCGTCGTCGACAGCCATGTCTAGCGGGCACCACAT 60 ************************************************************ consensus_6022#0 GCTGTGGCCGGCTCGCCGCCCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAG 240 consensus_6022#1 GCTGTGGCCGGCTCGCCGCNCACCGCCGCCGCCGCCACCGCCACTATCGCCGGCATCAAG 120 ******************* **************************************** consensus_6022#0 GGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAAC 300 consensus_6022#1 GGAGGCGAACCCTTGTTCTGGTGGGCCGGCCCACCAAGCCAGCCCATCAGCGGAGGCAAC 180 ************************************************************ consensus_6022#0 TGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGCCTTAGTTGTTTCTT 360 consensus_6022#1 TGGTGGGCCAGCCTGACATCCTGGGCCCACCGTTCATGTGTCCCGNCTTGTCAGTGACAG 240 ********************************************* *** ** * consensus_6022#0 CTCCTCGCTCGAGGCTGCAAGAAAATCAAGAACCCGATCGCCACGTCGAGATCAACCTCT 420 consensus_6022#1 CCTCCNCCCCTACTCTTCAAATTCTCCTGGGCTTCGCGCTCTCGGTCTCGGGTGGTAACG 300 * * * * * ** *** * * ** * * *** * * consensus_6022#0 CTCCAGGCCGGCAATGGACGGGCGCGCCGGTTGCTGCGTCCGCTTCATCGGCTGCTGCCT 480 consensus_6022#1 ACC--------------------------------------------------------- 303 * consensus_6022#0 CGCCGCCGACGGTGACGCCGCCCTGAGCCAGAGCGCGGCCGCGCTGCACAGGATGGCGTC 540 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GGCGTTCTTGGACGCTCACGGCGAGCCCTTGGTACTCCTCGACCACCGGGTGCTCTGCTC 600 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CCATGGCGTCGCCACCGTGGGGCACAGCCAGGCCTTCGCCGCGGCGATGAGGCAGCGCAG 660 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 AGAGGAGATTCCCCCTGCCCCATTCAGGATTCTGCTGCAGGAAGAATATGTCGGGTGGGC 720 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 TGAAGTGGCGGCATGCGCCAATGGGAACAAGATTGTGGACAAGAAGTCCTGGAGAGCTTC 780 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GGTCAGGAACATGCTCGATGCTGTGTACAGGATGATATGTCAGGTCCTTGCCTCTGCTGT 840 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GAGATCTGTTTGGGCTATTGGCACCTATATGCTTCCTCTATCAGCTGCAGAGTTTTTCAG 900 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 AAGGAGACTACCCGCATCAGCTGTGCCAGAAAAAATTAGCTGGCGGGGTGTCATTAGCAC 960 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 TTTCAGATTTCAAATCTTCCCTGATACCTGCGCCATAGTAGCATGCTCAGTCTGTATCGA 1020 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GGCACAACACAGGCTCGAGTTTGAGCGCCTACACGGGCAAGGCACATTCATCCTCGAATT 1080 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GCCTGATTCCACCAGGAAGCTGAGAAGATTCTGCCTGGAGAGAAAAGCTTGGTTTAAGGG 1140 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 TAAAGGGGCTCATATCGATAGCCTCCTGTCTCTGATCCAGGAGACTGGTGGAGTGCCCGC 1200 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 AATAAGTACAACGAACACAAGAAGCAGCCTCCTTCTGCCCCTTCACAGCTATGACTACTT 1260 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CAGCCTCCGGGGGTGCTGGACAAACCTGACACCCCAGCAGGCTGCACAGCTGATCTTCAC 1320 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CGGTGGTCCCTGCATTGGCAGTCTCTGGGTTGATGGATCCTACACCAGCAAGCACCACTA 1380 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CAGCGATGACAACGATGACGATGAGGAGGACATGCTAGTGTACCGTGGCTGTGATCCCAA 1440 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GAAGAAGATACACCGGGATAAGGAGACAGGCTTACATGCCGTCGTGTGTTACGCGTACCT 1500 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CTTCATTGGGAAGGAGCTGCACATCCGTGTCCAGGACAATATGCCTATCTGCAGTCCCCA 1560 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CAACTGGATCCTTTTCCAGGCGTTTGACATGTTTTACACCCTACGAGTCATGCCCTTAGA 1620 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 TGCTTCAAGACTGTATGATCCCTTGTAGAAGATGACAGTGCCGCCGAAGATTTCACAGAA 1680 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GATAGGCAAAGACCGAGCATGGCTCCATGCCAACCTTCGTCGGCTACATGAAGCGATGAT 1740 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 GATCCAGAAAGGGAAAGAGAAGGTCTGCTGAAGTTAGGAGCTTGCTGGTGAGCCGGTTTT 1800 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 ATCTCTCTTGAAGGCTGTGTTCGTTCATTCTGCGCCGCTGCTCTCTTCGTCAGTATTAGC 1860 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 TGACTGATTGATTAGTTGTAATGCTGAATGGCGAGATGGTGTCCCCAGCATTTTGTAGAA 1920 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 AGACCTGATCCATCCTGTTTACGCCTTCAAGTAAACCTGGACGCTAAGCCTTTTGTCCAG 1980 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 AATGCATGACTGTGTGCAGACACACAATGGATCGATTTTCTCCTTTTTGTGTGTGTGTGT 2040 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 CGTTTCAGTCAAATTTTGGGCGTCAGGGCTGTTTGAGATTTGTTATGTGGTTTTGAGGCT 2100 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 TGCCTGTTTTGATTGCTACTTTGAGTTCCACGAAGTGATGAAGTAGTACATATTTATTTT 2160 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 ATTGTGTTCTTTTTTTGCCTCTTCTGTCATTTCAACTTTATCTATGGTGATCATCTGACC 2220 consensus_6022#1 ------------------------------------------------------------ consensus_6022#0 AAGTACTTCTCTAGTTGTCTGGTCAGTTAATTTTTTTATTCCTGAAATGTGCTT 2274 consensus_6022#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||