These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence [CCACATTTTAAAAAACTCTCCGATCAATGCCTCTCCTCACCAGCAATAGTAGCGGGAGAAGCCTAGGTTCAGCAATCTCGAGAGAGAAGGCAGCAAGGTTCGTCAGCTCTAATCCAAAAACACAGCTCCTCAATGCACAACTTTTCTCTGTAGGTGAACGCCCTCGCTCCTGCAAACAACAGGTTTCTGATGATTTTATGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTTTTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAACTAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGACCTTTTGGTTAAATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAACTGTTCGATAAAATCCCAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGCCTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGAGAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAATGTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTC-AATGTTTATCGAGCTTTATATNGCAAATTATGTAGCTGCTTTGCATTTTTTAGTGTTTAAAAGCGGTTATAAAGTAGTATGTCAAATTACATTAGTACATAACTCTGAGTATGTATGTTTTGTGTGATATATATTATAGGAAAGGGCAATAAATTTTGTCTTTATAAAAAAAAAAACTTAAAGG] [+] EMBL CB634447 [CCACATTTTAAAAAACTCTCCGATCAATGCCTCTCCTCACCAGCAATAGTAGCGGGAGAAGCCTAGGTTCAGCAATCTCGAGAGAGAAGGCAGCAAGGTTCGTCAGCTCTAATCCAAAAACACAGCTCCTCAATGCACAACTTTTCTCTGTAGGTGAACGCCCTCGCTCCTGCAAACAACAGGTTTCTGATGATTTTATGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTTTTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAACTAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGACCTTTTGGTTAAATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAACTGTTCGATAAAATCCCAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGCCTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGAGAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAATGTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTC AATGTTTATCGAGCTTTATATNG ] [-] EMBL CB634448 [ TGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTTTTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAACTAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGCCCTTTTGGTTAAATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAACTGTTCGATAAAATCCCAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGCCTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGAGAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAATGTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTCAAATGTTTATCGAGCTTTATATGACAAATTATGTAGCTGCTTTGCATTTTTTAGTGTTTAAAAGCGGTTATAAAGTAGTATGTCAAATTACATTAGTACATAACTCTGAGTATGTATGTTTTGTGTGATATATATTATAGGAAAGGGCAATAAATTTTGTCTTTATAAAAAAAAAAACTTAAAGG] consensusID : consensus_6036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CACGAGGCTAAGAACTGAATCCTATGATGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGGTTTCCACTTTTCAGCACTCCCAACTAGCTTTTTCTTTTAGTTTCAGTAAGAACTTTGATTGAATGTTAAGTACGCCTTTATTCTCCCAAGAAAATGTGGAACTGCATGTTGCATGTTGGTAAATAATAATTGATAAAAGGTACTGACTGCAAAACCCAAAATTGCAGTCACCAATTGCTTCTAATAAAATTGGTGCACACATGTTTTAGTTTCCTAATAAAATAATTTGCTGGCAATTGTGGCATACTATAAAGCCCATGTCCTGCTTTACCTTGGACAGATAATAAGAGCATTGTATATACCCATAGGTGCACTTACAATTATCCCTTTTTCTTGGTGTGTGCAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGTAATAATGATGTTGCCCTCTTGATAAAAGTTATTCTCTCTTCAGGTTTTCTTTGCATATATTTCAGATTTTTATTGATTGCACATCAGTGACTA] [+] EMBL CF307251 [CACGAGGCTAAGAACTGAATCCTATGATGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGGTTTCCACTTTTCAGCACTCCCAACTAGCTTTTTCTTTTAGTTTCAGTAAGAACTTTGATTGAATGTTAAGTACGCCTTTATTCTCCCAAGAAAATGTGGAACTGCATGTTGCATGTTGGTAAATAATAATTGATAAAAGGTACTGACTGCAAAACCCAAAATTGCAGTCACCAATTGCTTCTAATAAAATTGGTGCACACATGTTTTAGTTTCCTAATAAAATAATTTGCTGGCAATTGTGGCATACTATAAAGCCCATGTCCTGCTTTACCTTGGACAGATAATAAGAGCATTGTATATACCCATAGGTGCACTTACAATTATCCCTTTTTCTTGGTGTGTGCAGAAAGATAGTTTTGCAATTGACTTGGCATATTTACTGTTAGTGGCAGCGATCATGGTTATCACTCTTTCAAGTAATAATGATGTTGCCCTCTTGATAAAAGTTATTCTCTCTTCAGGTTTTCTTTGCATATATTTCAGATTTTTATTGATTGCACATCAGTGACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6036#0 CCACATTTTAAAAAACTCTCCGATCAATGCCTCTCCTCACCAGCAATAGTAGCGGGAGAA 60 consensus_6036#1 ------------------------------------------------------------ consensus_6036#0 GCCTAGGTTCAGCAATCTCGAGAGAGAAGGCAGCAAGGTTCGTCAGCTCTAATCCAAAAA 120 consensus_6036#1 ------------------------------------------------------------ consensus_6036#0 CACAGCTCCTCAATGCACAACTTTTCTCTGTAGGTGAACGCCCTCGCTCCTGCAAACAAC 180 consensus_6036#1 ------------------------------------------------------------ consensus_6036#0 AGGTTTCTGATGATTTTATGAATGAGGCTCCTCTTTGGATGTTTGCTTCTTATATGTGTT 240 consensus_6036#1 ------------------------------------------------------------ consensus_6036#0 TTATTTTACATTAATTAATTGCCCTTCTGACAAAAAAGGGAGATATCAGATTAGACAAAC 300 consensus_6036#1 ----------------------------------------------------CACGAGGC 8 * * consensus_6036#0 TAAGAACTGAATCCTATGAAGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGAAAG 360 consensus_6036#1 TAAGAACTGAATCCTATGATGCAGGCAAGCAATGGCATCCTCTGCAATCAATAAAGGTTT 68 ******************* ************************************ consensus_6036#0 ATAGTTTTGCAATTGACTTGGC--ATATTTACTGTTAGTGGCAGCGATCATGGTTATCAC 418 consensus_6036#1 CCACTTTT-CAGCACTCCCAACTAGCTTTTTCTTTTAGTTTCAGTAAGAACTTTGATTGA 127 * **** ** * * *** ** ***** *** * * * ** consensus_6036#0 TCTTTCAAGAAAGCTGGAAAAAAAATCGGAACATAAGTGCAGAACTGACCTTTTGGTTAA 478 consensus_6036#1 ATGTTAAGTACGCCTTTATTC----TCCCAAGA-AAATGTGGAACTGCATGTTGCATGTT 182 ** * * ** * ** ** * ** ** ****** ** * consensus_6036#0 ATCTACCGATGACTGATAATACTATTTTGTTAGTTCATTGTGTGGCGTAATGTTTTGAAC 538 consensus_6036#1 GGTAAATAATAATTGATAAAAGGTACTGACTGCAAAACCCAAAATTGCAGTCACCAATTG 242 * ** * ****** * * * * * * * consensus_6036#0 TGTTCGATAAAATCC---CAGATGGAGCTTGGCTCATAAATGCAATGGGTGATTTATGGC 595 consensus_6036#1 CTTCTAATAAAATTGGTGCACACATGTTTTAGTTTCCTAATAAAATA----ATTTGCTGG 298 * ******* ** * ** * * *** *** **** * consensus_6036#0 CTTTAAAGGGTTTCACTGCATAAGATCAAGATGAGTATATTTGAAGTAGCGGGGTGAAGA 655 consensus_6036#1 C----AATTGTGGCATACTATAAAGCCCA--TGTCCTGCTTTACCTTGGACAGATAATAA 352 * ** ** ** **** * * ** *** * * * * * * consensus_6036#0 GAAGCTATTATGTACATGGTGGAGCTGGAGATGTGGAGTCATTTTTTTGGATTATATAAT 715 consensus_6036#1 GAGCATTGTATATACCCATAGGTGC-----ACTTACAATTATCCCTTT----TTCTTGGT 403 ** * *** *** ** ** * * * * ** *** * * * consensus_6036#0 GTAGACAGTGGAGTTCATTTCAATGCCATAAAGACATATATTGCTCTGAGCTTTTCAATG 775 consensus_6036#1 GTGTGCAG-AAAGATAGTTTTGCAATTGACTTGGCATAT-TTACTGTTAG--TGGCAGCG 459 ** *** ** * *** * ***** ** ** * ** * ** * consensus_6036#0 TTTATCGAGCTTTATATNGCAAATTATGTAGCTGCTTTGCATTTTTTAGTGTTTAAAAGC 835 consensus_6036#1 ATCATGGTTATCACTCTTTCAAGTAATAATGATG--TTGCCCTCTTGA-----TAAAAGT 512 * ** * * * * *** * ** * ** **** * ** * ****** consensus_6036#0 GGTTATAAAGTAGTATGTCAAATTACATTAGTACATAACTCTGAGTATGTATGTTTTGTG 895 consensus_6036#1 TATTCT-------CTCTTCAGGTTTTCTTTGCATATATTTCAGA-TTTTTATTGATTGCA 564 ** * *** ** ** * * *** ** ** * * *** *** consensus_6036#0 TGATATATATTATAGGAAAGGGCAATAAATTTTGTCTTTATAAAAAAAAAAACTTAAAGG 955 consensus_6036#1 CATCAGTGACTA------------------------------------------------ 576 * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||