cluster # 6040

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6040 cluster # 6040 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6040#0 length = 1427 sequences # 1

consensus_6040#1 length = 818 sequences # 1
consensus_6040#2 length = 424 sequences # 1

consensusID : consensus_6040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1427
fasta sequence

                              [AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTCATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCGGCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAGCACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGCTGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTGGCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTTTCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAATGGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGGGGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCTATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGTTACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCATACAAACCCTGACGAGTACACTTAACTCATAGTACTACCTCAAGGATTGCTGCGCAGCATGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTCCCAAGGCATGAAGGTCACTCGTACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCTTGTGCCGTTCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGCATAGGCCGATACTTAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTGCATGCACCAAGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAGGGGGTCCATTGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCAAAGAGGGAGTAAAAACTGGTCAGATCACACAGGTTTTCAATGTGTAATCTGATTAC]

[+] EMBL AK102314             [AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTCATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCGGCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAGCACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGCTGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTGGCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTTTCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAATGGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGGGGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCTATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGTTACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCATACAAACCCTGACGAGTACACTTAACTCATAGTACTACCTCAAGGATTGCTGCGCAGCATGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTCCCAAGGCATGAAGGTCACTCGTACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCTTGTGCCGTTCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGCATAGGCCGATACTTAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTGCATGCACCAAGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAGGGGGTCCATTGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCAAAGAGGGAGTAAAAACTGGTCAGATCACACAGGTTTTCAATGTGTAATCTGATTAC]




>consensus_6040#0
AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTC
ATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCG
GCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAG
CACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGC
TGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTG
GCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTT
TCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAAT
GGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGG
GGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCT
ATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGT
TACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATT
CACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAA
GCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC
TATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCA
GAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCT
GCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCAT
ACAAACCCTGACGAGTACACTTAACTCATAGTACTACCTCAAGGATTGCTGCGCAGCATG
CACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTCCCAAGGCATGAAGGTCACTCG
TACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCTTGTGCCGT
TCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGCATAGGCCGATACT
TAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTGCATGCACCA
AGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAGGGGGTCCAT
TGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCAAAGAGGGAG
TAAAAACTGGTCAGATCACACAGGTTTTCAATGTGTAATCTGATTAC

consensusID : consensus_6040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 818
fasta sequence

                              [GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAGACAAACCCTGACGAGTACACTTAACTCATGGTACTACCTCAAGGATTCCTGCGCAGCGTGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAGGTCACTCGTACTAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCTTGTGCCGTTCAATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAGGCCGATACTTAGAAACCTCAGTGNTTGGTGGTANGACTTGGGAAGCATACTGTTTGCTGCATGCACCAAGGTTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGGCCATTATACNTTANNCTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCAGAGAGGGAGTAAAAACTGGTCAAAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA]

[+] EMBL CA765840             [GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCCTTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGTCATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCAGAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAGACAAACCCTGACGAGTACACTTAACTCATGGTACTACCTCAAGGATTCCTGCGCAGCGTGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAGGTCACTCGTACTAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCTTGTGCCGTTCAATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAGGCCGATACTTAGAAACCTCAGTGNTTGGTGGTANGACTTGGGAAGCATACTGTTTGCTGCATGCACCAAGGTTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGGCCATTATACNTTANNCTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCAGAGAGGGAGTAAAAACTGGTCAAAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA]




>consensus_6040#1
GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATTCACCC
TTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAAGCAGT
CATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGA
CACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCAGAGCA
ATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCT
ATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAGACAAA
CCCTGACGAGTACACTTAACTCATGGTACTACCTCAAGGATTCCTGCGCAGCGTGCACGT
AATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAGGTCACTCGTAC
TAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCTTGTGCCGTTCA
ATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAGGCCGATACTTA
GAAACCTCAGTGNTTGGTGGTANGACTTGGGAAGCATACTGTTTGCTGCATGCACCAAGG
TTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGGCCATTATACNTTANN
CTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCAGAGAGGGAGTAAAAACTGGTCA
AAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA

consensusID : consensus_6040#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCAGAGCAATTGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACTGCCCTATGTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAGACAAATCCCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGCAGTGCTTACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTTCCCAAAGCATAAAGGCCACTCATACTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCTTGTTCCGTTTAATG]

[+] EMBL AU183153             [TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCAGAGCAATTGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACTGCCCTATGTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAGACAAATCCCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGCAGTGCTTACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTTCCCAAAGCATAAAGGCCACTCATACTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCTTGTTCCGTTTAATG]




>consensus_6040#2
TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCACTATGACA
CAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCAGAGCAAT
TGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACTGCCCTAT
GTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAGACAAATC
CCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGCAGTGCTT
ACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTTCCCAAAGCATAAAGGCCACTCATA
CTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCTTGTTCCGTTT
AATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      AGTAACACACACTCTCTCCCTTCCGATCGTCGCCGGCGGCCATCGGCGGCGCTAGGGTTC 60
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      ATCGGGTTACGCAGGACAAACTGCGTAGGCGAGGCGCGGGGGAATCTCGCGATGGAGGCG 120
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      GCCGTCGCTTCCACCGGCTCCGGCCTGCGCTGCTCGCCCAATCCGATGCCTAAGCAGCAG 180
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      CACGAGCGGCGAAGTGCTCGGGTGGGCTTCGTCTCCCAGCCGCGACCTCGCGCTGTCCGC 240
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      TGCGAGCGGTCGCCCCATCCGGATGCTCGAGCCTACGCGGCGGTGGCGGTGGGGGTGGTG 300
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      GCGAAGGGGCGTGAGGTTGGGGGCGTCGGGGTGGAGAGAAGGAGGCTCGCGGTGTTCGTT 360
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      TCCGGTGGGGGATCCAACTTCCGGGCGATCCACGACGCCGCTCTGGGTGGGGAGGTGAAT 420
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      GGTGATGTGGTTGCGTTGGTTACCGATAAACCAGGCTGTGGAGGAGCGGAGCATGCGAGG 480
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      GGTAATGGGATACCGGTGGTTGTGTTCCCGAAGTCGAAGTCTGCTCCAGAGGGGGTTTCT 540
                                                                                  

consensus_6040#1      ------------------------------------------------------------
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      ATTGATGAGTTGTTGAATGCTCTGAGGGAACTCAGGGTAGACTTCATTCTACTTGCTGGT 600
                                                                                  

consensus_6040#1      -----GAAACTTATACCGGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATT 55
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      TACCTGAAACTTATACCTGTTGAGCTAGTTCAGGAATATCCAAAATCCATTTTGAATATT 660
                                                                                  

consensus_6040#1      CACCCTTCACTACTCCCAGCATTTGGAGGAAAAGGTTATTATGGTTTGAAGGTGCATAAA 115
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      CACCCTTCACTACTCCCAGCATTTGGAGGCAAAGGTTATTATGGTTTGAAGGTGCATAAA 720
                                                                                  

consensus_6040#1      GCAGTCATCGCATCAGGGGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC 175
consensus_6040#2      -------TCGCATCAGGAGCCAGGTACTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC 53
consensus_6040#0      GCAGTCATCGCATCAGGGGCCAGGTATTCGGGTCCAACTGTGCACTTTGTGGATGAGCAC 780
                             ********** ******** *********************************

consensus_6040#1      TATGACACAGGAAGTACTCTAGCCCAAAGGGTTGTGCCTGTGCTAGCCAATGATACTCCA 235
consensus_6040#2      TATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCAAGCCAATGATACTCCA 113
consensus_6040#0      TATGACACAGGAAGGACTCTAGCCCAAAGGGTTGTACCTGTGCTAGCCAATGATACTCCA 840
                      ************** ******************** ******* ****************

consensus_6040#1      GAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCT 295
consensus_6040#2      GAGCAATTGGCTACAAGAGTCCTTCATGAGGANNATCAGGTTTATGTTGAGGCAGTTACT 173
consensus_6040#0      GAGCAATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCT 900
                      ************ *******************  *********************** **

consensus_6040#1      GCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTCCCACTTATTAGAAGGCAG 355
consensus_6040#2      GCCCTATGTGAGGACCGAATTGTGTGGAGAGAAGATGGTATCCCACTTATTAGAAGCCAG 233
consensus_6040#0      GCCCTATGTGATGACCGAATTGTGTGGAGAGAAGATGGTGTTCCACTTATTAGAAGTCAT 960
                      *********** *************************** * ************** ** 

consensus_6040#1      ACAAACCCTGACGAGTACACTTAACTCAT-GGTACTACCTCAAGGATTCCTGCGCAGCGT 414
consensus_6040#2      ACAAATCCCGATGAGTACACTTAACTCATTGGTATTATCTCAAGGATTGCTGCGCAGCGC 293
consensus_6040#0      ACAAACCCTGACGAGTACACTTAACTCAT-AGTACTACCTCAAGGATTGCTGCGCAGCAT 1019
                      ***** ** ** *****************  *** ** ********** *********  

consensus_6040#1      G-----CACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTTTCCCAAGGCGTGAAG 469
consensus_6040#2      AGTGCTTACGTAATGAGGCTTCTAGAATGCCTGCATTATTTTT---CCCAAAGCATAAAG 350
consensus_6040#0      G-----CACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTT--CCCAAGGCATGAAG 1072
                             ****************************** *****   ***** ** * ***

consensus_6040#1      GTCACTCGTACTAATTGAGATAAATAACATGTCTGGTGCTGNTACTGAAACAAAATATCT 529
consensus_6040#2      GCCACTCATACTAATTGAGATAAATAACATGTCTGGTGTTGTTACTGAAACAAAATATCT 410
consensus_6040#0      GTCACTCGTACTAATTGAGATAAATAACTTGTCTGGTGCTGTTACTGAAACAAAATATCT 1132
                      * ***** ******************** ********* ** ******************

consensus_6040#1      TGTGCCGTTCAATTCACTCCTTGTTGTGTGACTTTGCTCCAACAGTGACATGTGCCATAG 589
consensus_6040#2      TGTTCCGTTTAATG---------------------------------------------- 424
consensus_6040#0      TGTGCCGTTCAACTCACCGCTTGTTGTGTGACTTTGCTCCAACAATGACATGCGC-ATAG 1191
                      *** ***** **                                                

consensus_6040#1      GCCGATACTTAGAAACCTCAGTGNTTGGTGGTANGACTTG-GGAAGCATACTGTTTGCTG 648
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      GCCGATACTTAGAAACCTCAGTGTTTGCTGGTGTGACTTGCGGAAGCATACTGGTTGCTG 1251
                                                                                  

consensus_6040#1      CATGCACCAAGGTTTTTTTTCTCTTTTTCTTTTTCCTTTTTTTTGGGGGGGGGGGGG--- 705
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      CATGCACCAAGTTTTTTTTTTTTTTGTGTGTGTGACAGAGCGGGGTGGGGGGGGGGGGAG 1311
                                                                                  

consensus_6040#1      -----CCATTATACN--TTANNCTTGGNAATGGTGGAATTGGCTGAAGCCAAGTCGATCA 758
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      GGGGTCCATTGTACCCTTTAGTCTTGGAATTGTTGTAATCGGCTGAAGTCAAGTCGATCA 1371
                                                                                  

consensus_6040#1      GAGAGGGAGTAAAAACTGGTCAAAATCCCACAGGNTTTCAAAGGGGAANCCGGATTACCA 818
consensus_6040#2      ------------------------------------------------------------
consensus_6040#0      AAGAGGGAGTAAAAACTGGTCAGA-TCACACAGGTTTTCAATGTGTAATCTGATTAC--- 1427