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Oryza sativa
cluster # 6045 cluster # 6045       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6045#0 length = 2020 sequences # 1  
 consensus_6045#1 length = 1622 sequences # 2  
consensusID : consensus_6045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2020
fasta sequence 
                              [TTCCTCGAGCACTGTTGGCCTACTGGATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTTCCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTTTCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGACGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGTGCGTGCCTCGCGTGCTCGATCCCTTCCTCAGTTTCTCATCATGTCGCGTGGCGTCGCGGGGACGAACCCTCGTGCGTCGATGTCGCGTCGCCGTGGTGCGTGCTGCTGATCAATGGACGATGGGTTTTTGATGATATGTTTGTGCTTGCTTGGCTTCGCGTGGCGTGCAGGGGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTACAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGGTAATGACGCCAACTCCCTGGCTACTTTAATTCGAGATCAGTAGTATAATCCGATCGCCGTGATCTTTATTATCGTTCATCCCGACGTACGTTGACGAGCGGCTTCGTTTTACCAGAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGTACGCAATACCGCAAATACCAGCGTCCAGTAGTACTTTTGGTCAGTGCGAGCAAAAGCACACACAATATCCATTCACCAGCTTCAATTTCTGCTCGATTTTGCGCGTGATTTTGTGCGTGATTTTCCGCAGGGAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAGACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACAACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTTAAAAAAAAAAAAAAAAGGCCACATG]

[+] EMBL AK109348             [TTCCTCGAGCACTGTTGGCCTACTGGATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTTCCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTTTCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGACGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGTGCGTGCCTCGCGTGCTCGATCCCTTCCTCAGTTTCTCATCATGTCGCGTGGCGTCGCGGGGACGAACCCTCGTGCGTCGATGTCGCGTCGCCGTGGTGCGTGCTGCTGATCAATGGACGATGGGTTTTTGATGATATGTTTGTGCTTGCTTGGCTTCGCGTGGCGTGCAGGGGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTACAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGGTAATGACGCCAACTCCCTGGCTACTTTAATTCGAGATCAGTAGTATAATCCGATCGCCGTGATCTTTATTATCGTTCATCCCGACGTACGTTGACGAGCGGCTTCGTTTTACCAGAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGTACGCAATACCGCAAATACCAGCGTCCAGTAGTACTTTTGGTCAGTGCGAGCAAAAGCACACACAATATCCATTCACCAGCTTCAATTTCTGCTCGATTTTGCGCGTGATTTTGTGCGTGATTTTCCGCAGGGAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAGACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACAACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTTAAAAAAAAAAAAAAAAGGCCACATG]




>consensus_6045#0
TTCCTCGAGCACTGTTGGCCTACTGGATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAA
TTTTTAAGTCCAGTTCCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGC
CGGCTCGAGATCTTTTCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAG
CAACGTCGTCGTCGACGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTC
GGCCGGCCGGATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCAC
CGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGG
GTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGAT
CGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTT
CGTCAGGGTGCGTGCCTCGCGTGCTCGATCCCTTCCTCAGTTTCTCATCATGTCGCGTGG
CGTCGCGGGGACGAACCCTCGTGCGTCGATGTCGCGTCGCCGTGGTGCGTGCTGCTGATC
AATGGACGATGGGTTTTTGATGATATGTTTGTGCTTGCTTGGCTTCGCGTGGCGTGCAGG
GGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACT
CGAGCTACAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATG
AGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGT
TCCTGGTAATGACGCCAACTCCCTGGCTACTTTAATTCGAGATCAGTAGTATAATCCGAT
CGCCGTGATCTTTATTATCGTTCATCCCGACGTACGTTGACGAGCGGCTTCGTTTTACCA
GAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTAC
CATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTA
CTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGTACGCAATACCG
CAAATACCAGCGTCCAGTAGTACTTTTGGTCAGTGCGAGCAAAAGCACACACAATATCCA
TTCACCAGCTTCAATTTCTGCTCGATTTTGCGCGTGATTTTGTGCGTGATTTTCCGCAGG
GAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTA
CAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAA
GGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCC
GTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTC
CGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGC
GGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGAT
CGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTA
GGCAAGGGGGAGTAGACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGC
TTCGATCGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGA
GTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGC
TGAAATTTTCTCACAACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCT
TCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATA
TATACGGCATCTTTTAAAAAAAAAAAAAAAAGGCCACATG

consensusID : consensus_6045#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1622
fasta sequence 
                              [TACCTCACCCACCTACCTATCCGCGGCCTTTGTCATTGTTTCTTTATTCTCGAGTCGTCCGGAGAGTTTGTATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTTCCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTTTCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGACGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGGGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTGCAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGGAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACC-AACATGGGGAGGATCGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAGACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACAACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTTAA]

[+] EMBL AK101743             [TACCTCACCCACCTACCTATCCGCGGCCTTTGTCATTGTTTCTTTATTCTCGAGTCGTCCGGAGAGTTTGTATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTTCCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTTTCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGACGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGCATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTCGGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGACGTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAGGACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGGGTGTGACGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTGCAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGAGCAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGGAGCCACACGATAGGGAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAGGCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGGCGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCTGAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCTCAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGAGTACTTCAGGGACTACGCGGAGGCCATGACC AACATGGGGAGGATCGAGGTGCTCACCGGCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAGACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACAACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTTAA]
[-] EMBL OSR3076A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gaaaAGAATGCCGTCCGCGAATNCAACGGACGAGTACTTCAGGAACTACGCGAAGCCCATGACCAAACATGGGGAGAATCGAGGTGCTCACCGNCGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAGACGGANCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATTGATCAATCGTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTCTATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACAACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTCTTCGTTCACCCTGTTCTTCACGGTATGGCATGG                             ]




>consensus_6045#1
TACCTCACCCACCTACCTATCCGCGGCCTTTGTCATTGTTTCTTTATTCTCGAGTCGTCC
GGAGAGTTTGTATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTT
CCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTT
TCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGA
CGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGC
ATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTC
GGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGAC
GTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAG
GACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGGGTGTGA
CGCGTCCATCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTG
CAGCCTCCGCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCC
GATGACCGTGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGAG
CAACGGCCCACGGTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCAT
TGACGCCGACAACGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTT
TAGTGTCAAGAACCTGGGATGGAAGGACCTCGTCGTCCTATCAGGGAGCCACACGATAGG
GAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAG
GCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGG
CGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCT
GAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCT
CAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGA
GTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGG
CGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAG
ACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATC
GTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTC
TATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACA
ACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTC
TTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTT
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6045#0      ---------------------------------------------TTCCTCGAGCACTGT 15
consensus_6045#1      TACCTCACCCACCTACCTATCCGCGGCCTTTGTCATTGTTTCTTTATTCTCGAGTCGTCC 60
                                                                    * ******   *  

consensus_6045#0      TGGCCTACTGGATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTT 75
consensus_6045#1      GGAGAGTTTGTATTCGCGGGAGGCCGGTGCCTGGAATGCAGCCAATTTTTAAGTCCAGTT 120
                       *      ** *************************************************

consensus_6045#0      CCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTT 135
consensus_6045#1      CCCATTCCAGCTCCGTCTTTCTTTCTTCTCCTCCTGGATTTCTGCCGGCTCGAGATCTTT 180
                      ************************************************************

consensus_6045#0      TCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGA 195
consensus_6045#1      TCAACGCTCTTGAGCTAGCGGCGGCTTTGTTTAATTCGTGGTGAGCAACGTCGTCGTCGA 240
                      ************************************************************

consensus_6045#0      CGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGC 255
consensus_6045#1      CGACGAATTCGATCCGGAGGAAGGGTTCGTTGTCCGGCCCAGTTCGGCCGGCCGGATGGC 300
                      ************************************************************

consensus_6045#0      ATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTC 315
consensus_6045#1      ATTGTTGGGCGTCCTCGTCGGGGCGGTGATCATCGTCGTCGCCACCGCGGCCGCCGTTTC 360
                      ************************************************************

consensus_6045#0      GGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGAC 375
consensus_6045#1      GGGCAGCGGGCTGCCGGTGCCTGGATACGACGGGCTCGCCATCGGGTTCTACCACGAGAC 420
                      ************************************************************

consensus_6045#0      GTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAG 435
consensus_6045#1      GTGCCCACAGGCGGAGGACCTGGTGCTCGCCGAGATGAGGGAGATCGTCCAGGAGGACAG 480
                      ************************************************************

consensus_6045#0      GACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGGTGCGTGC 495
consensus_6045#1      GACCCTCGCGCCGGCGCTCCTGCGGTTCATGCTCCACGACTGCTTCGTCAGGG------- 533
                      *****************************************************       

consensus_6045#0      CTCGCGTGCTCGATCCCTTCCTCAGTTTCTCATCATGTCGCGTGGCGTCGCGGGGACGAA 555
consensus_6045#1      ------------------------------------------------------------
                                                                                  

consensus_6045#0      CCCTCGTGCGTCGATGTCGCGTCGCCGTGGTGCGTGCTGCTGATCAATGGACGATGGGTT 615
consensus_6045#1      ------------------------------------------------------------
                                                                                  

consensus_6045#0      TTTGATGATATGTTTGTGCTTGCTTGGCTTCGCGTGGCGTGCAGGGGTGTGACGCGTCCA 675
consensus_6045#1      ---------------------------------------------GGTGTGACGCGTCCA 548
                                                                   ***************

consensus_6045#0      TCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTACAGCCTCC 735
consensus_6045#1      TCATGCTGAAATCGCGGGAAAAAATCGGGGAGAGGGACGCCAACTCGAGCTGCAGCCTCC 608
                      *************************************************** ********

consensus_6045#0      GCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCG 795
consensus_6045#1      GCGGCTACGAACAGATCGAAAGGATCAAGGCCAAGCTGGAAGATGAGTGCCCGATGACCG 668
                      ************************************************************

consensus_6045#0      TGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTGGTAATGACGC 855
consensus_6045#1      TGTCGTGTGCGGACATCATCGTCATGGCCGCGCGGGACGCCGTGTTCCTG---------- 718
                      **************************************************          

consensus_6045#0      CAACTCCCTGGCTACTTTAATTCGAGATCAGTAGTATAATCCGATCGCCGTGATCTTTAT 915
consensus_6045#1      ------------------------------------------------------------
                                                                                  

consensus_6045#0      TATCGTTCATCCCGACGTACGTTGACGAGCGGCTTCGTTTTACCAGAGCAACGGCCCACG 975
consensus_6045#1      ----------------------------------------------AGCAACGGCCCACG 732
                                                                    **************

consensus_6045#0      GTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAA 1035
consensus_6045#1      GTACCAGGTGGAGACCGGACGCCGGGACGGCAAGGTGTCCTGTACCATTGACGCCGACAA 792
                      ************************************************************

consensus_6045#0      CGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAA 1095
consensus_6045#1      CGATCTCCCACCGCCCGGCTCCAACATTGTCGACCTCAAGATCTACTTTAGTGTCAAGAA 852
                      ************************************************************

consensus_6045#0      CCTGGGATGGAAGGACCTCGTCGTCCTATCAGGTACGCAATACCGCAAATACCAGCGTCC 1155
consensus_6045#1      CCTGGGATGGAAGGACCTCGTCGTCCTATCAGG--------------------------- 885
                      *********************************                           

consensus_6045#0      AGTAGTACTTTTGGTCAGTGCGAGCAAAAGCACACACAATATCCATTCACCAGCTTCAAT 1215
consensus_6045#1      ------------------------------------------------------------
                                                                                  

consensus_6045#0      TTCTGCTCGATTTTGCGCGTGATTTTGTGCGTGATTTTCCGCAGGGAGCCACACGATAGG 1275
consensus_6045#1      ---------------------------------------------GAGCCACACGATAGG 900
                                                                   ***************

consensus_6045#0      GAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAG 1335
consensus_6045#1      GAGGGCGCAGTGCGGCTCGTTCGCGCGCGACAGGCTGTACAACTACAGCGGGGAAGGGAG 960
                      ************************************************************

consensus_6045#0      GCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGG 1395
consensus_6045#1      GCAGGACCCGTCGCTGAACACGGCGTACGCGCCGGAGCTGAGGAAGGCGTGCGTGGCCGG 1020
                      ************************************************************

consensus_6045#0      CGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCT 1455
consensus_6045#1      CGACCCTTTCGACAAGACGTACGTGGACATGGACCCGGGGAGCCCGTACACGTTCGACCT 1080
                      ************************************************************

consensus_6045#0      GAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCT 1515
consensus_6045#1      GAGCTACTACCGGGACGTGTACAGAAACAGGGGCCTCTTCGTCTCCGACCAGGCCCTCCT 1140
                      ************************************************************

consensus_6045#0      CAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGA 1575
consensus_6045#1      CAATGACAAGTGGACCAAGCAGTACGTGGAGAGGATGGCGTCCGCGGATTCGACGGACGA 1200
                      ************************************************************

consensus_6045#0      GTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGG 1635
consensus_6045#1      GTACTTCAGGGACTACGCGGAGGCCATGACCAACATGGGGAGGATCGAGGTGCTCACCGG 1260
                      ************************************************************

consensus_6045#0      CGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAG 1695
consensus_6045#1      CGACAACGGCGAGATCAGGAAGGTGTGCGGCGCGTACGTTGACTAGGCAAGGGGGAGTAG 1320
                      ************************************************************

consensus_6045#0      ACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATC 1755
consensus_6045#1      ACGGAGCCAGCGCGCGGTTCGTTGGGTGCGAGTTGGCGCAATCGCTTCGATCGATCAATC 1380
                      ************************************************************

consensus_6045#0      GTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTC 1815
consensus_6045#1      GTCATGTGGCCGTGGCAAACGTGGGGGCTAGCCAACCACAGTGGAGTTGCGTTATTATTC 1440
                      ************************************************************

consensus_6045#0      TATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACA 1875
consensus_6045#1      TATATATCGGTCGAGGTGGTTGGGGCGTTGACGCTCACCGCCCGCTGAAATTTTCTCACA 1500
                      ************************************************************

consensus_6045#0      ACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTC 1935
consensus_6045#1      ACTGGAAAGAAAAACTGTAGGTATATCAACACATAGAATAGTCCTTCTCTCTTTTTTTTC 1560
                      ************************************************************

consensus_6045#0      TTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTT 1995
consensus_6045#1      TTCGTTCACCCTGTTCTTCACGGTATGGCATGGTGCAAATATATATATACGGCATCTTTT 1620
                      ************************************************************

consensus_6045#0      AAAAAAAAAAAAAAAAGGCCACATG 2020
consensus_6045#1      AA----------------------- 1622
                      **


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)