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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2160 fasta sequence
[CTCCTCTCCCACCTCCAGCGCCGCACCTCCACCTCCACCTCCCTCCCCGTCCCCGTCGTCAGCGTCGGCAACCTCACCTGGGGAGGGAATGGCAAGACCCCCATGGTCGACTTCCTCGCCCGCGCCTTCCACCGCATCGGCGTCTCGCCCCTCATCCTAACCAGGGGCTACGCAGGCGGCGATGAATCCAGGATGCTCCGNCGCCGNCTCTCCGATACCTCCGNCAAGATTGGTGTCGGTCCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTCGNCATACTAGACGATGGGATGCAGCACCTCAGCTTGCTTCGAGATGTTGACATTGTCATGATCAACGCCCTCAATCCTTGGGGGAACAAACATCTCATTCCACGAGGACCCATGAGGGAACCACTCACTGCACTCACCAGAGCTCATATTCTCCTCATTCATCATGCTAACCTGGTTTCTCAACCACAACTTAAAACAATTCTTTCCACGGTCCACGACAATGGCGCAACATGTCCAGTCTTCTTTAGTAAATTGGTACCATCGCATATTTTTCAAGTCAACCAACCCATGCACAGGCTTCCTCTTCATGTGCTGCACGGTATAATCGTGCTATGCGTTTCTGCTATTGGCTGCCCAGATGCTTTCATTCATTCTGTTCAAGAGGTATTCCCACCTTTCTTGTTTTTATCACTTTGTCTACAAACTTTTGTCCTTGTCCTACCTATCATCAAATATGGAACGATGGTTGTTGTGAGGTTGTAATCCTTTTCATTATAAGGTAACCTATGCATTATTGCAATTTAATGCTACCAGGCTAACTGTTAATCAACCCCCACCTCCTCTGAAGAAATGAGTGATACAATGACAGATAAATCTGCAATAGAAAGAAGATAAAAAAAAAGATGTAATCCAAGTAACAAAATATGGTGTAGTTTCTCTGCTCCCAACTGGAGTATAAGAAATACCTTTTTTTTGCAAAGCTGCAAAAGGTGGCTGTCTTCCTTTAATGTTTACTATTAGAGCTCTCAGCTAAAACAAACAAGACAGTCAAATCACCACATGATTGGTACATTCTTTCTGGCTCATTTGCAATGCTTGCTTTTGGGTGTAGGCTTTTACTACATCCTGTCCAAAGTTGGTAATTCCATGGTTCAAAAATGATTGTGAATGGAGATATCTACCAAATATTGGATCTATGTGTTGCTCTGCTCAATTTTGGTTAATTCATGCCATGCTAGATTTAAACACAAATCTGAATTGAGTAGTCAGCTAATCCTTGTCATCAGGAAATTTTAGAATGTTATTCATTCATTGGCTGTAGATTGGCCCTCTCAAGATTGAAAGGTTGGATTTCAGCGATCACCATTCCTTCAGTTCTCATGTAAGTAACACCATATTGACATTGGCAGAGTGACCATTCCTTCAACAATTGAAGATGCACGCACTTTCAAAATGTGATTAGATTGAAAAGCTCAATGATACATAGTTTGAGCATGCGCATGCAAACCTTTCTTTCCAATGTATCTGTAATATTAACTGTTTCCTAAAATAAAGAGAACATATCTAATTGTTAGCTCAGTGGTACTAGTCTAGATGTTGCAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACATGGTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACGTTGAAGAAGCTTGTGTATCAGCACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGATTATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAGGTTTGGGTGTTGTCGTCTTGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGGGAGATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATCTAGTTGTATTTCCGTTGGATCAATGAATTAAAACCCCAATTTTAGC]
[+] EMBL OSC21981 [CTCCTCTCCCACCTCCAGCGCCGCACCTCCACCTCCACCTCCCTCCCCGTCCCCGTCGTCAGCGTCGGCAACCTCACCTGGGGAGGGAATGGCAAGACCCCCATGGTCGACTTCCTCGCCCGCGCCTTCCACCGCATCGGCGTCTCGCCCCTCATCCTAACCAGGGGCTACGCAGGCGGCGATGAATCCAGGATGCTCCGNCGCCGNCTCTCCGATACCTCCGNCAAGATTGGTGTCGGTCCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTCGNCATACTAGA ]
[+] EMBL AK070220 [ TCTTTCTTTCCA GGGCTACGCAGGCGGCGATGAATCCAGGATGCTCCGCCGCCGCCTCTCCGATACCTCCGCCAAGATTGGTGTCGGTCCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTCGCCATACTAGACGATGGGATGCAGCACCTCAGCTTGCTTCGAGATGTTGACATTGTCATGATCAACGCCCTCAATCCTTGGGGGAACAAACATCTCATTCCACGAGGACCCATGAGGGAACCACTCACTGCACTCACCAGAGCTCATATTCTCCTCATTCATCATGCTAACCTGGTTTCTCAACCACAACTTAAAACAATTCTTTCCACGGTCCACGACAATGGCGCAACATGTCCAGTCTTCTTTAGTAAATTGGTACCATCGCATATTTTTCAAGTCAACCAACCCATGCACAGGCTTCCTCTTCATGTGCTGCACGGTATAATCGTGCTATGCGTTTCTGCTATTGGCTGCCCAGATGCTTTCATTCATTCTGTTCAAGAGGTATTCCCACCTTTCTTGTTTTTATCACTTTGTCTACAAACTTTTGTCCTTGTCCTACCTATCATCAAATATGGAACGATGGTTGTTGTGAGGTTGTAATCCTTTTCATTATAAGGTAACCTATGCATTATTGCAATTTAATGCTACCAGGCTAACTGTTAATCAACCCCCACCTCCTCTGAAGAAATGAGTGATACAATGACAGATAAATCTGCAATAGAAAGAAGATAAAAAAAAAGATGTAATCCAAGTAACAAAATATGGTGTAGTTTCTCTGCTCCCAACTGGAGTATAAGAAATACCTTTTTTTTGCAAAGCTGCAAAAGGTGGCTGTCTTCCTTTAATGTTTACTATTAGAGCTCTCAGCTAAAACAAACAAGACAGTCAAATCACCACATGATTGGTACATTCTTTCTGGCTCATTTGCAATGCTTGCTTTTGGGTGTAGGCTTTTACTACATCCTGTCCAAAGTTGGTAATTCCATGGTTCAAAAATGATTGTGAATGGAGATATCTACCAAATATTGGATCTATGTGTTGCTCTGCTCAATTTTGGTTAATTCATGCCATGCTAGATTTAAACACAAATCTGAATTGAGTAGTCAGCTAATCCTTGTCATCAGGAAATTTTAGAATGTTATTCATTCATTGGCTGTAGATTGGCCCTCTCAAGATTGAAAGGTTGGATTTCAGCGATCACCATTCCTTCAGTTCTCATGTAAGTAACACCATATTGACATTGGCAGAGTGACCATTCCTTCAACAATTGAAGATGCACGCACTTTCAAAATGTGATTAGATTGAAAAGCTCAATGATACATAGTTTGAGCATGCGCATGCAAACCTTTCTTTCCAATGTATCTGTAATATTAACTGTTTCCTAAAATAAAGAGAACATATCTAATTGTTAGCTCAGTGGTACTAGTCTAGATGTTGCAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACATGGTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACGTTGAAGAAGCTTGTGTATCAGCACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGATTATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAGGTTTGGGTGTTGTCGTCTTGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGGGAGATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATCTAGTTGTATTTCCGTTGGATCAATGAATTAAAACCCCAATTTTAGC]
consensusID : consensus_6056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence
[GCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTAAGGCAAAACTATTTTNCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAANAANAAANNATNN]
[+] EMBL AU094158 [GCCAAGAGTTGCTGAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTAAGGCAAAACTATTTTNCCAGTAGGATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAATATGCATTATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAANAANAAANNATNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6056#0 CTCCTCTCCCACCTCCAGCGCCGCACCTCCACCTCCACCTCCCTCCCCGTCCCCGTCGTC 60
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 AGCGTCGGCAACCTCACCTGGGGAGGGAATGGCAAGACCCCCATGGTCGACTTCCTCGCC 120
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CGCGCCTTCCACCGCATCGGCGTCTCGCCCCTCATCCTAACCAGGGGCTACGCAGGCGGC 180
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 GATGAATCCAGGATGCTCCGNCGCCGNCTCTCCGATACCTCCGNCAAGATTGGTGTCGGT 240
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CCCAATAGAGCGGCTGTCGCTACCTCCATGCTCCGCAAATATGGTGCTCAAATTGGAGTC 300
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 GNCATACTAGACGATGGGATGCAGCACCTCAGCTTGCTTCGAGATGTTGACATTGTCATG 360
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 ATCAACGCCCTCAATCCTTGGGGGAACAAACATCTCATTCCACGAGGACCCATGAGGGAA 420
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CCACTCACTGCACTCACCAGAGCTCATATTCTCCTCATTCATCATGCTAACCTGGTTTCT 480
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CAACCACAACTTAAAACAATTCTTTCCACGGTCCACGACAATGGCGCAACATGTCCAGTC 540
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TTCTTTAGTAAATTGGTACCATCGCATATTTTTCAAGTCAACCAACCCATGCACAGGCTT 600
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CCTCTTCATGTGCTGCACGGTATAATCGTGCTATGCGTTTCTGCTATTGGCTGCCCAGAT 660
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 GCTTTCATTCATTCTGTTCAAGAGGTATTCCCACCTTTCTTGTTTTTATCACTTTGTCTA 720
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CAAACTTTTGTCCTTGTCCTACCTATCATCAAATATGGAACGATGGTTGTTGTGAGGTTG 780
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TAATCCTTTTCATTATAAGGTAACCTATGCATTATTGCAATTTAATGCTACCAGGCTAAC 840
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TGTTAATCAACCCCCACCTCCTCTGAAGAAATGAGTGATACAATGACAGATAAATCTGCA 900
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 ATAGAAAGAAGATAAAAAAAAAGATGTAATCCAAGTAACAAAATATGGTGTAGTTTCTCT 960
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 GCTCCCAACTGGAGTATAAGAAATACCTTTTTTTTGCAAAGCTGCAAAAGGTGGCTGTCT 1020
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TCCTTTAATGTTTACTATTAGAGCTCTCAGCTAAAACAAACAAGACAGTCAAATCACCAC 1080
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 ATGATTGGTACATTCTTTCTGGCTCATTTGCAATGCTTGCTTTTGGGTGTAGGCTTTTAC 1140
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TACATCCTGTCCAAAGTTGGTAATTCCATGGTTCAAAAATGATTGTGAATGGAGATATCT 1200
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 ACCAAATATTGGATCTATGTGTTGCTCTGCTCAATTTTGGTTAATTCATGCCATGCTAGA 1260
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TTTAAACACAAATCTGAATTGAGTAGTCAGCTAATCCTTGTCATCAGGAAATTTTAGAAT 1320
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 GTTATTCATTCATTGGCTGTAGATTGGCCCTCTCAAGATTGAAAGGTTGGATTTCAGCGA 1380
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TCACCATTCCTTCAGTTCTCATGTAAGTAACACCATATTGACATTGGCAGAGTGACCATT 1440
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CCTTCAACAATTGAAGATGCACGCACTTTCAAAATGTGATTAGATTGAAAAGCTCAATGA 1500
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TACATAGTTTGAGCATGCGCATGCAAACCTTTCTTTCCAATGTATCTGTAATATTAACTG 1560
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TTTCCTAAAATAAAGAGAACATATCTAATTGTTAGCTCAGTGGTACTAGTCTAGATGTTG 1620
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 CAACGCAGCATTTTTGTCAATCTATAGTTTCTTAGTGCTACCACTCTGTTGATTCTTACA 1680
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TGGTGATTGTTTTTCTCTCGTTGTTGCATACAATAGGACCTGCAGCTTATCCAAGACACG 1740
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TTGAAGAAGCTTGTGTATCAGCACAAAAATAATGCTGTTGTCTTGGTTACAGAGAAGGAT 1800
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TATGACCGTGATCCAGATGTCCTTAGGGCACTGGATGCAAAGGTTTGGGTGTTGTCGTCT 1860
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 TGTCTGCAAATTATACCCCATGAGGGACAAGGAGATGATGAATTTATGAGGAAAGTGAGG 1920
consensus_6056#1 ------------------------------------------------------------
consensus_6056#0 GAGATTATTACAGCGAGTAGGCACGTGAAATTATAGGAGGGGGCCTAGCCAAGAGTTGCT 1980
consensus_6056#1 -----------------------------------------------GCCAAGAGTTGCT 13
*************
consensus_6056#0 GAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTGAGGCAAAACTATTTTGCCAGTAGG 2040
consensus_6056#1 GAACATTTAGTTAGAACCAGCTGTAAAAGAATTTTAAGGCAAAACTATTTTNCCAGTAGG 73
*********************************** *************** ********
consensus_6056#0 ATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAAT 2100
consensus_6056#1 ATCTGGTACTGCTGCATCTTGTTCAGGATTGGTCGATCAATTCAATTCCTGTTGCAGAAT 133
************************************************************
consensus_6056#0 ATGCATTATTGATCTAGTTGTATTTCCGTTGGATCAATGAATTAAAACCCCAATTTTAGC 2160
consensus_6056#1 ATGCATTATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAA 193
************* * * * ** ** **** **
consensus_6056#0 ---------------------
consensus_6056#1 AAAAAAAANAANAAANNATNN 214
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||