These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence [TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGTGACCCAGATTCGATCGATTCGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTTAGCTCTCGATCGATCGATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTAAAACT] [+] EMBL AK111927 [TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGTGACCCAGATTCGATCGATTCGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTTAGCTCTCGATCGATCGATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTAAAACT] consensusID : consensus_6057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 723 fasta sequence [TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAG-CTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTA-TTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTANAACTTCTTAAAAA] [+] EMBL AK112006 [TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAG CTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTA TTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAA ] [+] EMBL BI806402 [ tCCCCCG TCGGTTGCNT CCGTC CAGC GC GAGCGTC CCNTCGAC CC C GGC GCGGAAGGGAGTGCGACGCGGCCC AAACCGCGC GCGC GCTGTTCTACGCCAAGCCTGGAGCAGGAGATC GCTCCCTTCGCGAGACGCTGCAGCTCCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATC CCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGA GTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTACTTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCAC ATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTANAACTTCTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6057#0 TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTG 60 consensus_6057#1 TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTG 60 ************************************************************ consensus_6057#0 ATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGC 120 consensus_6057#1 ATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGC 120 ************************************************************ consensus_6057#0 CGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAA 180 consensus_6057#1 CGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAA 180 ************************************************************ consensus_6057#0 GGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGG 240 consensus_6057#1 GGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGG 240 ************************************************************ consensus_6057#0 AGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACG 300 consensus_6057#1 AGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACG 300 ************************************************************ consensus_6057#0 GCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGTGACCCAGATTCGATCGATT 360 consensus_6057#1 GCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGG-------------------- 340 **************************************** consensus_6057#0 CGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTTAGCTCTCGATCGATC 420 consensus_6057#1 ------------------------------------------------------------ consensus_6057#0 GATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCGACGA 480 consensus_6057#1 -------------------------------------------ATTTGATGTGTCGACGA 357 ***************** consensus_6057#0 GAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGA 540 consensus_6057#1 GAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGA 417 ************************************************************ consensus_6057#0 CGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAG 600 consensus_6057#1 CGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAG 477 ************************************************************ consensus_6057#0 CTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTT 660 consensus_6057#1 CTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTT 537 ************************************************************ consensus_6057#0 TTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGT 720 consensus_6057#1 TTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGT 597 ************************************************************ consensus_6057#0 AAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAA 780 consensus_6057#1 AAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAA 657 ************************************************************ consensus_6057#0 ACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTAAAACT--- 837 consensus_6057#1 ACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTANAACTTCT 717 **************************************************** **** consensus_6057#0 ------ consensus_6057#1 TAAAAA 723 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||