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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGTGACCCAGATTCGATCGATTCGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTTAGCTCTCGATCGATCGATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTAAAACT]
[+] EMBL AK111927 [TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGTGACCCAGATTCGATCGATTCGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTTAGCTCTCGATCGATCGATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTAAAACT]
consensusID : consensus_6057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 723 fasta sequence
[TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAG-CTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTA-TTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTANAACTTCTTAAAAA]
[+] EMBL AK112006 [TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTGATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGCCGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAAGGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAG CTGGAGCAGGAGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTA TTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAA ]
[+] EMBL BI806402 [ tCCCCCG TCGGTTGCNT CCGTC CAGC GC GAGCGTC CCNTCGAC CC C GGC GCGGAAGGGAGTGCGACGCGGCCC AAACCGCGC GCGC GCTGTTCTACGCCAAGCCTGGAGCAGGAGATC GCTCCCTTCGCGAGACGCTGCAGCTCCAGAGCATCGGCTACGTCGACATCTACGGCGTCCTGGACGACATGATC CCGACCCCGGCAAATACGGATTTGATGTGTCGACGAGAGGATGCTGCGGCACCGGAGAGTTCGA GTGACGCTTCTCTGCAACCAGCTGACGGCGACGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAGCTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTTTTGCTACTTACACTATTTACTTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGTAAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCAC ATGTCACATGGAAAACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTANAACTTCTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6057#0 TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTG 60
consensus_6057#1 TCAGGCCACTCCAGTTCGACATCTCATCCTACGTCGATTTCCTCGCCAATCTAGCCTCTG 60
************************************************************
consensus_6057#0 ATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGC 120
consensus_6057#1 ATTTCGTCAAGCAACTTCACCGGCAAGGGGCGAGGAGGATCGCCGTCCTGGGGATGCCGC 120
************************************************************
consensus_6057#0 CGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAA 180
consensus_6057#1 CGATCGGGTGCGTGCCGTCGCAGCGGCGGAGCGTCGCCGTCGACGCCGCGGGCGGCGGAA 180
************************************************************
consensus_6057#0 GGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGG 240
consensus_6057#1 GGGAGTGCGACGCGGCCCAAAACCGCGCGGCGCGGCTGTTCAACGCCAAGCTGGAGCAGG 240
************************************************************
consensus_6057#0 AGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACG 300
consensus_6057#1 AGATCGGCTGCCTTCGCGAGACGCTGCAGCTGCAGAGCATCGGCTACGTCGACATCTACG 300
************************************************************
consensus_6057#0 GCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGGTGACCCAGATTCGATCGATT 360
consensus_6057#1 GCGTCCTGGACGACATGATCGCCGACCCCGGCAAATACGG-------------------- 340
****************************************
consensus_6057#0 CGTTGTTTTGCTTCAAGAACACATTGTCGAATTCATCGATTCGTTAGCTCTCGATCGATC 420
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 GATCGCCTGAGAAGATGCTCGTTGTTGCTGCTGCCTGTGCAGGATTTGATGTGTCGACGA 480
consensus_6057#1 -------------------------------------------ATTTGATGTGTCGACGA 357
*****************
consensus_6057#0 GAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGA 540
consensus_6057#1 GAGGATGCTGCGGCACCGGAGAGTTCGAGGTGACGCTTCTCTGCAACCAGCTGACGGCGA 417
************************************************************
consensus_6057#0 CGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAG 600
consensus_6057#1 CGACGTGCGCCGATGACCGGAAGTTTGTCTTCTGGGACAGCTTCCATCCTACTGAGAGAG 477
************************************************************
consensus_6057#0 CTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTT 660
consensus_6057#1 CTTACAGCATAATGGTGGATTATCTGTACCAAAGATACGTGGATAAGCTACTCTAAGGTT 537
************************************************************
consensus_6057#0 TTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGT 720
consensus_6057#1 TTGCTACTTACACTATTTATTACTACTTGGTTATCAACCGAGAACACAATCTCGTGCTGT 597
************************************************************
consensus_6057#0 AAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAA 780
consensus_6057#1 AAAAATTAGGAGGGTAATTATGCAACCTTAGCACAGTTCCAGCACAATGTCACATGGAAA 657
************************************************************
consensus_6057#0 ACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTAAAACT--- 837
consensus_6057#1 ACTACCAAGAGATGTGAGACCCTTTTGTTCTGATAATGGAATTATGAAAGTANAACTTCT 717
**************************************************** ****
consensus_6057#0 ------
consensus_6057#1 TAAAAA 723
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||