Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6062 cluster # 6062       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6062#0 length = 800 sequences # 3  

consensusID : consensus_6062#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 800
fasta sequence
                              [ACCTACACACACTATTGAGCCTCTGTCACGAGAAGCCAATGTACTCGTGCGACCACGAATGCACGGCGCCAACGCACACCGCGTTCGGCGCCAAGTACCAGCCGTGCATCGGTGTCTCGGGGCGCCCTGACCATCACGCCGTCGGGAGGCTGCAGCAGCCGGCTGGCAAGGCCGCCGCCGCCGCCGTCGTTTCCGCGGCCGCGCAGCCTCAGCGCGCCGCCAAGAAGAGGCATGCGGCGGCGCCGCCGCCGCGCCCGTCGGCGTCGACGTCGCGCCGCTCGTCGACCACCGTGGTGGCGACCGACGTGTCCAGCTTCCGCTCCATGGTGCAGGAGCTCACCGGCTTCCCGGCGGCCGCCATCTTCCGGCCGCTGCCTCGTAGGATCCCCGTCCACGCGGTCAACCCGTCGCCCGCGGTGCGTGGGTACGGTGGTGGCGCGCTTCAGGGGCACGGTTCGGACACGGCGACTGCTGCCGGCAGCAGCAGCAGCAGCAACCCGGGCGTCTCGACCGTGCAGCTGATGCAGTGCTCGCCGCCCGGCGTGTTCGATGGGCTGCCGGACCTTGGGTCGCCGGAGTTCGACTCGTGGCTCGATTTGTCCGACGAGTAACCTCTCCTTGTCGGACTGGTCAATGGAAGCCAATACAATACTGTAGTAAAGGTTTGGTAATTGGCAGTACAGTACTTTCTTTCTGCGCATGCATCTCTTAAGGTTAGTGTGTTATAACATCCTTGAAAAAAATGATGGCGTTTGTACTCAAGCTTTCCCAAATTTGCAGAAATATGCGTTAATACACTC]

[+] EMBL AK103542             [ACCTACACACACTATTGAGCCTCTGTCACGAGAAGCCAATGTACTCGTGCGACCACGAATGCACGGCGCCAACGCACACCGCGTTCGGCGCCAAGTACCAGCCGTGCATCGGTGTCTCGGGGCGCCCTGACCATCACGCCGTCGGGAGGCTGCAGCAGCCGGCTGGCAAGGCCGCCGCCGCCGCCGTCGTTTCCGCGGCCGCGCAGCCTCAGCGCGCCGCCAAGAAGAGGCATGCGGCGGCGCCGCCGCCGCGCCCGTCGGCGTCGACGTCGCGCCGCTCGTCGACCACCGTGGTGGCGACCGACGTGTCCAGCTTCCGCTCCATGGTGCAGGAGCTCACCGGCTTCCCGGCGGCCGCCATCTTCCGGCCGCTGCCTCGTAGGATCCCCGTCCACGCGGTCAACCCGTCGCCCGCGGTGCGTGGGTACGGTGGTGGCGCGCTTCAGGGGCACGGTTCGGACACGGCGACTGCTGCCGGCAGCAGCAGCAGCAGCAACCCGGGCGTCTCGACCGTGCAGCTGATGCAGTGCTCGCCGCCCGGCGTGTTCGATGGGCTGCCGGACCTTGGGTCGCCGGAGTTCGACTCGTGGCTCGATTTGTCCGACGAGTAACCTCTCCTTGTCGGACTGGTCAATGGAAGCCAATACAATACTGTAGTAAAGGTTTGGTAATTGGCAGTACAGTACTTTCTTTCTGCGCATGCATCTCTTAAGGTTAGTGTGTTATAACATCCTTGAAAAAAATGATGGCGTTTGTACTCAAGCTTTCCCAAATTTGCAGAAATATGCGTTAATACACTC]
[+] EMBL AK062661             [     CACACACTATTGAGCCTCTGTCACGAGAAGCCAATGTACTCGTGCGACCACGAATGCACGGCGCCAACGCACACCGCGTTCGGCGCCAAGTACCAGCCGTGCATCGGTGTCTCGGGGCGCCCTGACCATCACGCCGTCGGGAGGCTGCAGCAGCCGGCTGGCAAGGCCGCCGCCGCCGCCGTCGTTTCCGCGGCCGCGCAGCCTCAGCGCGCCGCCAAGAAGAGGCATGCGGCGGCGCCGCCGCCGCGCCCGTCGGCGTCGACGTCGCGCCGCTCGTCGACCACCGTGGTGGCGACCGACGTGTCCAGCTTCCGCTCCATGGTGCAGGAGCTCACCGGCTTCCCGGCGGCCGCCATCTTCCGGCCGCTGCCTCGTAGGATCCCCGTCCACGCGGTCAACCCGTCGCCCGCGGTGCGTGGGTACGGTGGTGGCGCGCTTCAGGGGCACGGTTCGGACACGGCGACTGCTGCCGGCAGCAGCAGCAGCAGCAACCCGGGCGTCTCGACCGTGCAGCTGATGCAGTGCTCGCCGCCCGGCGTGTTCGATGGGCTGCCGGACCTTGGGTCGCCGGAGTTCGACTCGTGGCTCGATTTGTCCGACGAGTAACCTCTCCTTGTCGGACTGGTCAATGGAAGCCAATACAATACTGTAGTAAAGGTTTGGTAATTGGCAGTACAGTACTTTCTTTCTGCGCATGCATCTCTTAAGGTTAGTGTGTTATAACATCCTTGAAAAAAATGATGGCGTTTGTACTCAAGCTTTCCCAAATTTGCAGAAATATGCGTTAATACACTC]
[-] EMBL OSS0745A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCACGGTTCGGACACGGCGACTGCTGCCGGCAGCAGCAGCAGCAGCAACCCGGGCGTCTCGACCGTGCAGCTGATGCAGTGCTCGCCGCCCGGCGTGTTCGATGGGCTGCCGGACCTTGGGTCGCCGGAGTTCGACTCGTGGCTCGATTTGTCCGACGAGTAACCTCTCCTTGTCGGACTGGTCAATGGAAGCCAATACAATACTGTAGTAAAGGTTTGGTAATTGGCAGTACAGTACTTTCTTTCTGCGCATGCATCTCTTAAGGTTAGTGTGTTATAACATCCTTGAAAAAAATGATGGCGTTTGTACTCAAGgatg                                 ]


>consensus_6062#0 ACCTACACACACTATTGAGCCTCTGTCACGAGAAGCCAATGTACTCGTGCGACCACGAAT GCACGGCGCCAACGCACACCGCGTTCGGCGCCAAGTACCAGCCGTGCATCGGTGTCTCGG GGCGCCCTGACCATCACGCCGTCGGGAGGCTGCAGCAGCCGGCTGGCAAGGCCGCCGCCG CCGCCGTCGTTTCCGCGGCCGCGCAGCCTCAGCGCGCCGCCAAGAAGAGGCATGCGGCGG CGCCGCCGCCGCGCCCGTCGGCGTCGACGTCGCGCCGCTCGTCGACCACCGTGGTGGCGA CCGACGTGTCCAGCTTCCGCTCCATGGTGCAGGAGCTCACCGGCTTCCCGGCGGCCGCCA TCTTCCGGCCGCTGCCTCGTAGGATCCCCGTCCACGCGGTCAACCCGTCGCCCGCGGTGC GTGGGTACGGTGGTGGCGCGCTTCAGGGGCACGGTTCGGACACGGCGACTGCTGCCGGCA GCAGCAGCAGCAGCAACCCGGGCGTCTCGACCGTGCAGCTGATGCAGTGCTCGCCGCCCG GCGTGTTCGATGGGCTGCCGGACCTTGGGTCGCCGGAGTTCGACTCGTGGCTCGATTTGT CCGACGAGTAACCTCTCCTTGTCGGACTGGTCAATGGAAGCCAATACAATACTGTAGTAA AGGTTTGGTAATTGGCAGTACAGTACTTTCTTTCTGCGCATGCATCTCTTAAGGTTAGTG TGTTATAACATCCTTGAAAAAAATGATGGCGTTTGTACTCAAGCTTTCCCAAATTTGCAG AAATATGCGTTAATACACTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)