These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1739 fasta sequence [TCCCGTCGTGCCGCCCCTCTCCTCCCGACTTCTCTCCCCGATGGCGGCGCTTCCCCACGTCCGGCGACAAGCAGCCAGCTGCAGATGCGCCATCTCTGCTCCATCGGCCATACTCTCCTCGGCATCGGCAACGGCGGCGGTCGGGCGGCGCCAAGCTTCAGCTCGGGCCAGATCAACGGCGCCCTCGCCGCCGGGCCTCCATGGAGAGCAGGTAGGCCTCGTCTCTACTCCTAACTTGGTCTGCGCGACGCGCTGAATCCATCCCGCAATTAGTTTTGTCCCACCTCGCTCATTTTGCGACAGAGCGACCTCTTTTTAAACTCTGATTGATTCTATTGTGTTGCCTCCCCGGAGACACCCACACCGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGCCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTTTGAAATTTTGTATCATCAAATTATTATTTTTCTGTTGATTAATCACGATAGCAGCAATGGAGGCCTGCATTTGAACCCCCTCTGCGTTTCAATTCCAATTTCCTTTGCATTTGTATTTGAATACCATATTTACCAGCTTAAATTATCTATGGTATAGACTACGGAATGTGTATAGCAAACTGGAAAAATTAGAGATGTGGCGATAGAGGAGAGCCTATCATCAGCAGGTATGCAAAGAATTTCCTGTGAAACGAAGTACTGAAATACTCTTAGCAGAGGTGATTTTTTTTAAGCCAGAGATGTGAATGATTTGTTCACGCTGCAAGACAATGGAAATAATGATTGAAGTGAAACATCAATCAAATATTTTCAGCCAATTGTCTGAAGATGTCAATACCGGGATTCCAAATAAAGCAATAAGATCGGCTATGCGCTGCTTTGGCTGCTCCGACAACCTCTGAGACTGAGCTGAGCTCATCCAAGCATGGACGAAGTATCCAACATTTTGAAGTCCTTTTTGTGCTCAAGGCATTCATTTTTCTCAGAGTGCAATCAATCATGAGGACATAATGCATGCTAATGATTACCAGAAGCTGCGCCTAGAAGAAGCAGAAGCTTCACAGGCGTCATAAAGGGAAGCTGAAGCTTTAAGGTTTTATGCCTATCATGGATACTTGGGAGTTGCAACAATTTTTCTGTTGCTACATGGACTGGATCATTGGACGAGCTGGTGCAGTGGTGCTGTTGGAGCACCATTCTGTTTTCAGGTGGGTGCTCTAAATGGCAAAGCATGTTCCCTGCTGAACTGTTTTAAGACCTCCTACTAGGAAGATACTAGTTCATTTTGAAGTCCTAATCCGCCAATCTACACCTTCATACGACTGCATGGTGGTTCAGTCAGCTCAATGAGCATAACTGAACATTTCAAGAAGTTTTTTTTAAGAACAAGAACCACATTCCGTCCATGGATATGCTGCTGTTTGAGAACCTGTTGGCAACGTTGCAAGGATGTGCAAATGAGGTGCTGAAACCTGACTACCACAAATTTTAGCTGTAGCTGGTCGGAGCAAAGTAATGTCTAGGTGTAACGCACTGTAAATTTGATAGATGAGACGCGTCCCTAAATAATATCCTTTTTAAGTCTTTG] [+] EMBL AK106626 [TCCCGTCGTGCCGCCCCTCTCCTCCCGACTTCTCTCCCCGATGGCGGCGCTTCCCCACGTCCGGCGACAAGCAGCCAGCTGCAGATGCGCCATCTCTGCTCCATCGGCCATACTCTCCTCGGCATCGGCAACGGCGGCGGTCGGGCGGCGCCAAGCTTCAGCTCGGGCCAGATCAACGGCGCCCTCGCCGCCGGGCCTCCATGGAGAGCAGGTAGGCCTCGTCTCTACTCCTAACTTGGTCTGCGCGACGCGCTGAATCCATCCCGCAATTAGTTTTGTCCCACCTCGCTCATTTTGCGACAGAGCGACCTCTTTTTAAACTCTGATTGATTCTATTGTGTTGCCTCCCCGGAGACACCCACACCGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGCCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTTTGAAATTTTGTATCATCAAATTATTATTTTTCTGTTGATTAATCACGATAGCAGCAATGGAGGCCTGCATTTGAACCCCCTCTGCGTTTCAATTCCAATTTCCTTTGCATTTGTATTTGAATACCATATTTACCAGCTTAAATTATCTATGGTATAGACTACGGAATGTGTATAGCAAACTGGAAAAATTAGAGATGTGGCGATAGAGGAGAGCCTATCATCAGCAGGTATGCAAAGAATTTCCTGTGAAACGAAGTACTGAAATACTCTTAGCAGAGGTGATTTTTTTTAAGCCAGAGATGTGAATGATTTGTTCACGCTGCAAGACAATGGAAATAATGATTGAAGTGAAACATCAATCAAATATTTTCAGCCAATTGTCTGAAGATGTCAATACCGGGATTCCAAATAAAGCAATAAGATCGGCTATGCGCTGCTTTGGCTGCTCCGACAACCTCTGAGACTGAGCTGAGCTCATCCAAGCATGGACGAAGTATCCAACATTTTGAAGTCCTTTTTGTGCTCAAGGCATTCATTTTTCTCAGAGTGCAATCAATCATGAGGACATAATGCATGCTAATGATTACCAGAAGCTGCGCCTAGAAGAAGCAGAAGCTTCACAGGCGTCATAAAGGGAAGCTGAAGCTTTAAGGTTTTATGCCTATCATGGATACTTGGGAGTTGCAACAATTTTTCTGTTGCTACATGGACTGGATCATTGGACGAGCTGGTGCAGTGGTGCTGTTGGAGCACCATTCTGTTTTCAGGTGGGTGCTCTAAATGGCAAAGCATGTTCCCTGCTGAACTGTTTTAAGACCTCCTACTAGGAAGATACTAGTTCATTTTGAAGTCCTAATCCGCCAATCTACACCTTCATACGACTGCATGGTGGTTCAGTCAGCTCAATGAGCATAACTGAACATTTCAAGAAGTTTTTTTTAAGAACAAGAACCACATTCCGTCCATGGATATGCTGCTGTTTGAGAACCTGTTGGCAACGTTGCAAGGATGTGCAAATGAGGTGCTGAAACCTGACTACCACAAATTTTAGCTGTAGCTGGTCGGAGCAAAGTAATGTCTAGGTGTAACGCACTGTAAATTTGATAGATGAGACGCGTCCCTAAATAATATCCTTTTTAAGTCTTTG] consensusID : consensus_6065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 237 fasta sequence [CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAAA] [+] EMBL OSC04831A [CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAAA] [+] EMBL AU183609 [CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCTGCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAGGCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATACAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6065#0 TCCCGTCGTGCCGCCCCTCTCCTCCCGACTTCTCTCCCCGATGGCGGCGCTTCCCCACGT 60 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 CCGGCGACAAGCAGCCAGCTGCAGATGCGCCATCTCTGCTCCATCGGCCATACTCTCCTC 120 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GGCATCGGCAACGGCGGCGGTCGGGCGGCGCCAAGCTTCAGCTCGGGCCAGATCAACGGC 180 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GCCCTCGCCGCCGGGCCTCCATGGAGAGCAGGTAGGCCTCGTCTCTACTCCTAACTTGGT 240 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 CTGCGCGACGCGCTGAATCCATCCCGCAATTAGTTTTGTCCCACCTCGCTCATTTTGCGA 300 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 CAGAGCGACCTCTTTTTAAACTCTGATTGATTCTATTGTGTTGCCTCCCCGGAGACACCC 360 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 ACACCGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCT 420 consensus_6065#1 ----CGACTAGATACAGCGGTAAGATCCCCACTGTGGCCACGGTTTGGCGGACACCTTCT 56 ******************************************************** consensus_6065#0 GCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGCCCCCTCCCGTTACGGGGCACGGCAG 480 consensus_6065#1 GCTGTAAAAAAATAAAAATGGAGCAGTCATAAGGTCCCCTCCCGTTACGGGGCACGGCAG 116 ********************************** ************************* consensus_6065#0 GCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATA 540 consensus_6065#1 GCGCCTACCGGTTAGGCTGCATCCATCATACACGTTAAGATGTCAAATACGGCATACATA 176 ************************************************************ consensus_6065#0 CAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTTTGAAATTT 600 consensus_6065#1 CAGTCGGGTCTCTCGGTGGAGACAGCGCTAGACATTAGCGCTTTGCCTTTTAAAAAAAAA 236 *************************************************** *** consensus_6065#0 TGTATCATCAAATTATTATTTTTCTGTTGATTAATCACGATAGCAGCAATGGAGGCCTGC 660 consensus_6065#1 A----------------------------------------------------------- 237 consensus_6065#0 ATTTGAACCCCCTCTGCGTTTCAATTCCAATTTCCTTTGCATTTGTATTTGAATACCATA 720 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 TTTACCAGCTTAAATTATCTATGGTATAGACTACGGAATGTGTATAGCAAACTGGAAAAA 780 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 TTAGAGATGTGGCGATAGAGGAGAGCCTATCATCAGCAGGTATGCAAAGAATTTCCTGTG 840 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 AAACGAAGTACTGAAATACTCTTAGCAGAGGTGATTTTTTTTAAGCCAGAGATGTGAATG 900 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 ATTTGTTCACGCTGCAAGACAATGGAAATAATGATTGAAGTGAAACATCAATCAAATATT 960 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 TTCAGCCAATTGTCTGAAGATGTCAATACCGGGATTCCAAATAAAGCAATAAGATCGGCT 1020 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 ATGCGCTGCTTTGGCTGCTCCGACAACCTCTGAGACTGAGCTGAGCTCATCCAAGCATGG 1080 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 ACGAAGTATCCAACATTTTGAAGTCCTTTTTGTGCTCAAGGCATTCATTTTTCTCAGAGT 1140 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GCAATCAATCATGAGGACATAATGCATGCTAATGATTACCAGAAGCTGCGCCTAGAAGAA 1200 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GCAGAAGCTTCACAGGCGTCATAAAGGGAAGCTGAAGCTTTAAGGTTTTATGCCTATCAT 1260 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GGATACTTGGGAGTTGCAACAATTTTTCTGTTGCTACATGGACTGGATCATTGGACGAGC 1320 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 TGGTGCAGTGGTGCTGTTGGAGCACCATTCTGTTTTCAGGTGGGTGCTCTAAATGGCAAA 1380 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 GCATGTTCCCTGCTGAACTGTTTTAAGACCTCCTACTAGGAAGATACTAGTTCATTTTGA 1440 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 AGTCCTAATCCGCCAATCTACACCTTCATACGACTGCATGGTGGTTCAGTCAGCTCAATG 1500 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 AGCATAACTGAACATTTCAAGAAGTTTTTTTTAAGAACAAGAACCACATTCCGTCCATGG 1560 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 ATATGCTGCTGTTTGAGAACCTGTTGGCAACGTTGCAAGGATGTGCAAATGAGGTGCTGA 1620 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 AACCTGACTACCACAAATTTTAGCTGTAGCTGGTCGGAGCAAAGTAATGTCTAGGTGTAA 1680 consensus_6065#1 ------------------------------------------------------------ consensus_6065#0 CGCACTGTAAATTTGATAGATGAGACGCGTCCCTAAATAATATCCTTTTTAAGTCTTTG 1739 consensus_6065#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||