These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1098 fasta sequence [GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCGCGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACGCGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGGAGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGGCAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTCCATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTTTGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATACGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCTAGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGTAGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGC] [+] EMBL AK060944 [GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCGCGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACGCGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGGAGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGGCAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTCCATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTTTGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATACGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCTAGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGTAGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGC] [+] EMBL CB636149 [ ATCCGCGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACGCGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGGAGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGGCAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTCCATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTTTGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATACGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCTAGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGTAGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAAGCTTGCATTCTACTTTAGTTTGTTTATT ] consensusID : consensus_6066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CTAAGTCGCTATTGCATAAGCTACTATTTGCATATTCGTTCCATCTGACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCATGTATCACTTTCTTTTTTGCGGAGATACCTGTTCGGTAACTGACTTTGGTCCTGCTTTTCTTTTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGCTCATATAGGATGTGTTT] [-] EMBL CB636150 [CTAAGTCGCTATTGCATAAGCTACTATTTGCATATTCGTTCCATCTGACAGGCTTGTGATGACGGCTGTGACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTACCAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCATGTATCACTTTCTTTTTTGCGGAGATACCTGTTCGGTAACTGACTTTGGTCCTGCTTTTCTTTTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGTGGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACATCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCATCTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTTTATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACTTTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACTGAATTGTCTATAAAACTGGCTCATATAGGATGTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6066#0 GCTCTCCGAAAAAAAAAAGGGGGAAAAAAAAAGCTCTTTTCCTCTCCTCGCGTCCATCCG 60 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 CGATCCACCACCTCCTCCTCCCGTCTCCGGCGACCGCCGCCGCGCCATTACACCCAGACG 120 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 CGCCGGTCTCCTCTCGGCACCGGCCGGCCTAGTCGACCGCAGAAGCGGAGGTGTGACCGG 180 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 AGCGGAGGTCGTCGGTCAAATCCACTCCGGGGGTTTCTTGAATTCTTGGGAGCAGAGAGG 240 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 CAAAAGTGAGGCAGCAGCCATGTCCATCGAGCTCATCCTGTGGCTCTTCTCCTTCGCCTC 300 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 CATCATGGTCCTCATCGGCCTCACCGCCTACCAGCTTATATGTTTATCTGATTTGGAGTT 360 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 TGATTATATCAACCCATACGATTCTTCATCTCGCATCAACTCAGTGGTCCTTATAGAATA 420 consensus_6066#1 ------------------------------------------------------------ consensus_6066#0 CGCACTCCAAGGGGCCTTGTGCGCTTCTTTCCTCTTGACACTGCATTGGTTCCCGTTTCT 480 consensus_6066#1 ---------------------------------------------CTAAGT--CGCTATT 13 * * ** * * consensus_6066#0 AGTTATGGCACCAGTAGCATACTACCATGGCAAATTGTATATGGATCGGAAACACCTTGT 540 consensus_6066#1 GCATAAGCTACTATTTGCATATT--CGTTCCATCTGACAGGCTTGTGATGACGGCTGTGA 71 ** * ** * * ***** * * * ** * * * * * ** consensus_6066#0 AGATGTTACCGAGATATTCCGGCAACTCAATTGGGAGAAAAAATACAGGATGATCAA-GC 599 consensus_6066#1 CGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTAC 131 * * ** * * ** *** * * ** ** * * * consensus_6066#0 TTGCATTCTACTT-TAGTTTGTTTATTATAACGATCTACAGGCTTGTGATGACGGCTGTG 658 consensus_6066#1 CAACTTTTCACACACAGATGGCTAGGTATTTCAGTCTCAGAACTTGTCATG-----TATC 186 * ** ** ** * * * *** * *** ***** *** * * consensus_6066#0 ACGTTATTCATTGATGAGGATGCAAATCTGGTTGACACTAGAACTATTTAGAGTTTGCTA 718 consensus_6066#1 ACTTTCTTTTTTG-CGGAGATACCTGTTCGGT---------AACT-----GACTTTGGT- 230 ** ** ** *** * *** * * *** **** ** **** * consensus_6066#0 CCAACTTTTCACACACAGATGGCTAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGT 778 consensus_6066#1 CCTGCTTTTCTT-------TTGCAAGGAAAATGTGTAAGATGCAGTGAAGTAAAGCTTGT 283 ** ****** * ** ************************************ consensus_6066#0 GGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACA 838 consensus_6066#1 GGTGTGCATCATTGAACAGCAAACCAACACTGCCAGCCTCTGAGAGAAGAATTCAGTACA 343 ************************************************************ consensus_6066#0 TCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCAT 898 consensus_6066#1 TCGCTCTGGCTTTCAGAGAAAGAAGATTCAACTCCCTAGCCGGGGTACTGAATCTAGCAT 403 ************************************************************ consensus_6066#0 CTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGTAGTTT 958 consensus_6066#1 CTCAGCATTATCATTTTAACCATAAACAAGAATTGGCAAGTCAGCTGTACAATGAAGTTT 463 ****************************************************** ***** consensus_6066#0 TATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACT 1018 consensus_6066#1 TATGCGTTTTGAGTGTGCTCGATGACATCTGTCTAAATTTGGTAGGCGATTGATGCAACT 523 ************************************************************ consensus_6066#0 TTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACT 1078 consensus_6066#1 TTTGGCAATCACTGATTCATACCTGCATCCAAGTAATGCTGTTGTACTCAATTCAACACT 583 ************************************************************ consensus_6066#0 GAATTGTCTATAAAACTGGC----------------- 1098 consensus_6066#1 GAATTGTCTATAAAACTGGCTCATATAGGATGTGTTT 620 ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||