These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1155 fasta sequence [GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTGATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTTTTCTTTCAAAAAAAA] [+] EMBL AF145727 [GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTGATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTTTTCTTTCAAAAAAAA] consensusID : consensus_6067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACC-ATGGC-TGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCACAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCATATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACTTGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA] [+] EMBL C73285 [TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACC ATGGC TGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAAAATCCCCC ] [+] EMBL AU094212 [ CTGCATTGGCTTGTGATGAT GGGGCCA TTCTCCGTCAGGCCTGAAGCTCACCAATGGCTTGTCCCCGGCNTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACANCAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATC AAAC TGAAGC TGCGG CCGAGGC AGGT GGAGGTCTGG TTTCAGAACCGTAGGGC AAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCACAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCATATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACTTGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6067#0 GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTG 60 consensus_6067#1 ---------------------------TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTN 33 * ****************************** consensus_6067#0 ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC 120 consensus_6067#1 ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC 93 ************************************************************ consensus_6067#0 TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG 180 consensus_6067#1 TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG 153 ************************************************************ consensus_6067#0 AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC 240 consensus_6067#1 AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC 213 ************************************************************ consensus_6067#0 AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC 300 consensus_6067#1 AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC 273 ************************************************************ consensus_6067#0 CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTC 360 consensus_6067#1 CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTC 333 ***************************************** ****************** consensus_6067#0 ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAA--CTGAAGCT-GCGGCCGA-GGCAGGT 416 consensus_6067#1 ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGG 393 ********************************* ******* **** * * **** * consensus_6067#0 --GGAGGTCTGGTTTCA-GAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGA 473 consensus_6067#1 TGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAA-------------------A 434 ************* * ************** * ** * consensus_6067#0 GTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCG 533 consensus_6067#1 ATCCCCCATCTTGATGCAATATATAGAGTACCCAAT--AATAAGTTCACAAGCTTCTTTA 492 * * * *** ** * * * ** * * * * * * *** * consensus_6067#0 GGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACAC 593 consensus_6067#1 TTTATCA------TTTCAGTAGAATCTACTC-CTCAGTCCTCGTTACACT-ATCATATAC 544 * * * ** * * * * * ** ** * * ** * * ** consensus_6067#0 CAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGC 653 consensus_6067#1 TAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAG-GCAAAGACTTGT 603 ** *** * * * ** * * * ** * * consensus_6067#0 CGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTC 713 consensus_6067#1 ACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA------------------ 645 * * * ** * * * * consensus_6067#0 GCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAG 773 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGA 833 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 GGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGG 893 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 ACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTG 953 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 TGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCG 1013 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 TGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGAC 1073 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 ATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGT 1133 consensus_6067#1 ------------------------------------------------------------ consensus_6067#0 CGCCGTTTTCTTTCAAAAAAAA 1155 consensus_6067#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||