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Oryza sativa
cluster # 6067 cluster # 6067       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6067#0 length = 1155 sequences # 1  
consensus_6067#1 length = 645 sequences # 2  

consensusID : consensus_6067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1155
fasta sequence
                              [GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTGATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTTTTCTTTCAAAAAAAA]

[+] EMBL AF145727             [GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTGATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAGGTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTTTTCTTTCAAAAAAAA]


>consensus_6067#0 GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTG ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTC ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAACTGAAGCTGCGGCCGAGGCAGGTGGAG GTCTGGTTTCAGAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGAGTGCGAG TACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCGGGAGGTG GAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACACCAGGCAG CCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGCCGCCACC GGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTCGCCCTTC CACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAGGCCACAA AAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAGGGCCCC GTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAAT GTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCG CGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCGTGTCGGA CCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACATGTTAT TTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGTCGCCGTT TTCTTTCAAAAAAAA



consensusID : consensus_6067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence
                              [TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACC-ATGGC-TGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCACAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCATATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACTTGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA]

[+] EMBL C73285               [TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACC ATGGC TGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAAAATCCCCC                                                                                                                                                                                                            ]
[+] EMBL AU094212             [                  CTGCATTGGCTTGTGATGAT GGGGCCA TTCTCCGTCAGGCCTGAAGCTCACCAATGGCTTGTCCCCGGCNTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACANCAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCGATC AAAC TGAAGC TGCGG CCGAGGC AGGT GGAGGTCTGG TTTCAGAACCGTAGGGC AAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCACAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCATATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACTTGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA]


>consensus_6067#1 TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTNATGATGGGGGCCACTTCTCCGTCAGGC CTGGAGCTCACCATGGCTGTCCCCGGCCTCAGCTCCTCTGGTTCAGAAGGGGCCGGTTGC AACAACAACAACGCCGGTGGCGGCTGCAACATGAGGGACCTGGACATCAACCAGCCGGCG AGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGCAGCGTGGAGGAGGACGAGGAGGAGAGG GGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTCCGCCTCTCCAAGGAGCAGTCCCGCCTC CTCGAGGAGAGCTTNCGCCTCAACCATACCCTCACGCCGAAGCAAAAGGAGGCCTTGGCG ATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGGTGGGAGGTCTGGTTTTAAGAACCGTAG GGCAAAGGTAAAAAATCCCCCATCTTGATGCAATATATAGAGTACCCAATAATAAGTTCA CAAGCTTCTTTATTTATCATTTCAGTAGAATCTACTCCTCAGTCCTCGTTACACTATCAT ATACTAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAGGCAAAGACT TGTACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6067#0      GCCTTTGCCCCGCCTTCCCTGCCCTTTTCTCTTGCTGAGCCGCTTCTGCATTGGCTTGTG 60
consensus_6067#1      ---------------------------TNTCTTGCTGAGCCGCTTCTGCATTGGCTTGTN 33
                                                 * ****************************** 

consensus_6067#0      ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC 120
consensus_6067#1      ATGATGGGGGCCACTTCTCCGTCAGGCCTGGAGCTCACCATGGCTGTCCCCGGCCTCAGC 93
                      ************************************************************

consensus_6067#0      TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG 180
consensus_6067#1      TCCTCTGGTTCAGAAGGGGCCGGTTGCAACAACAACAACGCCGGTGGCGGCTGCAACATG 153
                      ************************************************************

consensus_6067#0      AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC 240
consensus_6067#1      AGGGACCTGGACATCAACCAGCCGGCGAGCGGCGGCGAGGAGGAGGAGTTCCCGATGGGC 213
                      ************************************************************

consensus_6067#0      AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC 300
consensus_6067#1      AGCGTGGAGGAGGACGAGGAGGAGAGGGGCGTCGGTGGGCCCCACCGCCCCAAGAAGCTC 273
                      ************************************************************

consensus_6067#0      CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTCCGCCTCAACCATACCCTC 360
consensus_6067#1      CGCCTCTCCAAGGAGCAGTCCCGCCTCCTCGAGGAGAGCTTNCGCCTCAACCATACCCTC 333
                      ***************************************** ******************

consensus_6067#0      ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAA--CTGAAGCT-GCGGCCGA-GGCAGGT 416
consensus_6067#1      ACGCCGAAGCAAAAGGAGGCCTTGGCGATCAAAACTTGAAGCTTGCGGNCNAAGGCAAGG 393
                      *********************************   ******* **** * * **** * 

consensus_6067#0      --GGAGGTCTGGTTTCA-GAACCGTAGGGCAAGGACGAAGCTGAAGCAGACGGAGATGGA 473
consensus_6067#1      TGGGAGGTCTGGTTTTAAGAACCGTAGGGCAAAGGTAAAA-------------------A 434
                        ************* * ************** *   **                    *

consensus_6067#0      GTGCGAGTACCTGAAGCGCTGCTTCGGGTCGCTGACGGAGGAGAACCGCCGGCTGCAGCG 533
consensus_6067#1      ATCCCCCATCTTGATGCAATATATAGAGTACCCAAT--AATAAGTTCACAAGCTTCTTTA 492
                       * *     * *** **  *   * * **  *  *   *  *    * *  *** *    

consensus_6067#0      GGAGGTGGAGGAGCTGCGGGCGATGCGGGTGGCCCCGCCCACGGTGCTCTCGCCGCACAC 593
consensus_6067#1      TTTATCA------TTTCAGTAGAATCTACTC-CTCAGTCCTCGTTACACT-ATCATATAC 544
                                    * * *  **  *   *  * * * ** ** * * **   *  * **

consensus_6067#0      CAGGCAGCCGCTCCCGGCGTCCGCGCTCACCATGTGCCCCCGCTGCGAGCGCATCACCGC 653
consensus_6067#1      TAGAGTATTTTCTCCGCTATAAATAGCTATGTTCTGTACATACCAAG-GCAAAGACTTGT 603
                       **          ***   *        *   * **  *   *   * **  *     * 

consensus_6067#0      CGCCACCGGCCCGCCTGCCGTGCGCCCGCCGCCGTCGTCAGCCGCCGCCGCCGCCCCCTC 713
consensus_6067#1      ACACGAGAATGTGACGAAGAAGCATACTTGATCCTATAAAAA------------------ 645
                         *        * *      **   *     * *    *                    

consensus_6067#0      GCCCTTCCACCCTCGCCGCCCCTCTGCGGCCTTCTAGGCCCAAGGTCTCGCATCCTAAAG 773
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      GCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGA 833
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      GGGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGG 893
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      ACAAAATGTTTGTTGCGGTGTTTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTG 953
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      TGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACGCATGATCTTTTTTCCCCCG 1013
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      TGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGAC 1073
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      ATGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGTGGCCAACGGTGCGTAGTTCGT 1133
consensus_6067#1      ------------------------------------------------------------
                                                                                  

consensus_6067#0      CGCCGTTTTCTTTCAAAAAAAA 1155
consensus_6067#1      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)