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Oryza sativa
cluster # 6071 cluster # 6071       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6071#0 length = 614 sequences # 1  
consensus_6071#1 length = 585 sequences # 2  

consensusID : consensus_6071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGGGGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGAACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGGGGCTGATTACACAC]

[+] EMBL CA756505             [CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGGGGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGAACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGGGGCTGATTACACAC]


>consensus_6071#0 CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGG GGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGG AGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCT TCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTAT CAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACAT TGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTA GTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTT GGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGC AAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGA ACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGG GGCTGATTACACAC



consensusID : consensus_6071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 585
fasta sequence
                              [AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT]

[+] EMBL AK063058             [AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT]
[-] EMBL AU225715             [                                                                                             TTGCGTCGGCGGTGGAGAAGCTTCAGGCGGCGGCGCAGAACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTagcggc                     ]


>consensus_6071#1 AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGG CAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGG CGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGG CGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGA AGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGAC TACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTT TCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCG CCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGT TTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAAT GTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6071#0      CAGAATTCGGCACGAGGTTACGCCCGCCGTTAA-CCCTAGCTCCTTCCCCGGCGGCGGCG 59
consensus_6071#1      --------------AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCG 46
                                    * ***************** **************************

consensus_6071#0      G-GGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGT 118
consensus_6071#1      GCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGT 106
                      * ****** ***************************************************

consensus_6071#0      GGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGC 178
consensus_6071#1      GGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGC 166
                      ************************************************************

consensus_6071#0      CTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCT 238
consensus_6071#1      CTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCT 226
                      ************************************************************

consensus_6071#0      ATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCAC 298
consensus_6071#1      ATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCAC 286
                      ************************************************************

consensus_6071#0      ATTGAAGAGAAGAC-ACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGA 357
consensus_6071#1      ATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGA 346
                      ************** ******  ******** ********************* * ****

consensus_6071#0      CTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATG 417
consensus_6071#1      CTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCT-GTTGAGTGTTGAGAACTATG 405
                      ***************************** ********* ******** *    ******

consensus_6071#0      CTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAAC 477
consensus_6071#1      TTTGG-TTGTGCATCGCCCGCAAA---TTGGAATCCTTTTTAC-AGTTAG---ATAAAAT 457
                       **** ****** * *********   * *  * ********* * ****   * **** 

consensus_6071#0      CGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTT 537
consensus_6071#1      CGCAAGCAAGAC---AAACTTATGGT---TTCTAAGCTG-----TATTACACATATTTTG 506
                      ******  ***    ***********      ******      **   ********** 

consensus_6071#0      TGAAC-----GGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTT 592
consensus_6071#1      TAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGA---TTT 563
                      *          **      *  **   * * ***** * * *    ** * **     **

consensus_6071#0      TCGATCGGGGCTGATTACACAC 614
consensus_6071#1      ACAAATTCTATTTATCCCCCTT 585
                       * *       * **  * *  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)