These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGGGGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGAACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGGGGCTGATTACACAC] [+] EMBL CA756505 [CAGAATTCGGCACGAGGTTACGCCCGCCGTTAACCCTAGCTCCTTCCCCGGCGGCGGCGGGGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGACTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATGCTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAACCGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTTTGAACGGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTTTCGATCGGGGCTGATTACACAC] consensusID : consensus_6071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT] [+] EMBL AK063058 [AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCGGCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGTGGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGATTTACAAATTCTATTTATCCCCCTT] [-] EMBL AU225715 [ TTGCGTCGGCGGTGGAGAAGCTTCAGGCGGCGGCGCAGAACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGCCTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCTATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCACATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGACTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCTGTTGAGTGTTGAGAACTATGTTTGGTTGTGCATCGCCCGCAAATTGGAATCCTTTTTACAGTTAGATAAAATCGCAAGCAAGACAAACTTATGGTTTCTAAGCTGTATTACACATATTTTGTAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTagcggc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6071#0 CAGAATTCGGCACGAGGTTACGCCCGCCGTTAA-CCCTAGCTCCTTCCCCGGCGGCGGCG 59 consensus_6071#1 --------------AAGTTACGCCCGCCGTTAAACCCTAGCTCCTTCCCCGGCGGCGGCG 46 * ***************** ************************** consensus_6071#0 G-GGCGGGGGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGT 118 consensus_6071#1 GCGGCGGGAGGGGGCAGGAAGCCCGGAGATGCCACCGGCGTCGTCGGTTGCGTCGGCGGT 106 * ****** *************************************************** consensus_6071#0 GGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGC 178 consensus_6071#1 GGAGAAGCTGCAGGCGGCGGCGCAGGACGCGGCGAACTCCTCGTCGCGCTCGGCGGCCGC 166 ************************************************************ consensus_6071#0 CTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCT 238 consensus_6071#1 CTTCTCCGAGCAGGCGCACCAGGTCCTCGTGCCCAGGGCCGCAGGTCGTGTTGTCTCTCT 226 ************************************************************ consensus_6071#0 ATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCAC 298 consensus_6071#1 ATCAACTTGTACGAAGATCAGCGCCGTCAGCTTTGCAGTCGGTGTTGTGGTGGGCTTCAC 286 ************************************************************ consensus_6071#0 ATTGAAGAGAAGAC-ACGCCGCGGGGCTGCTTGGCTGCTGAAAAGAATTAAGGGCCATGA 357 consensus_6071#1 ATTGAAGAGAAGACTACGCCGGTGGGCTGCTAGGCTGCTGAAAAGAATTAAGGACGATGA 346 ************** ****** ******** ********************* * **** consensus_6071#0 CTAGTGAAATCTTTTCATGCCATGTTGTTTTCAAGTTCTTGTTGAGTGGTTGAGACTATG 417 consensus_6071#1 CTAGTGAAATCTTTTCATGCCATGTTGTTCTCAAGTTCT-GTTGAGTGTTGAGAACTATG 405 ***************************** ********* ******** * ****** consensus_6071#0 CTTGGGTTGTGCTTAGCCCGCAAAATATGGATACCCTTTTTACCACTTAGGATAAAAAAC 477 consensus_6071#1 TTTGG-TTGTGCATCGCCCGCAAA---TTGGAATCCTTTTTAC-AGTTAG---ATAAAAT 457 **** ****** * ********* * * * ********* * **** * **** consensus_6071#0 CGCAAGTCAGAACCAAAACTTATGGTGTTCCTTAAGCTTGTCATTACCCCACATATTTTT 537 consensus_6071#1 CGCAAGCAAGAC---AAACTTATGGT---TTCTAAGCTG-----TATTACACATATTTTG 506 ****** *** *********** ****** ** ********** consensus_6071#0 TGAAC-----GGCTCCGCTAGAGCCCTTAAAAATGTCTATCTCACAATTGTTGCGTTCTT 592 consensus_6071#1 TAGGTCCGTAAGCCTTAGAATTGCTACTCAGAATGTTTGTTTTCTGATGGGTGA---TTT 563 * ** * ** * * ***** * * * ** * ** ** consensus_6071#0 TCGATCGGGGCTGATTACACAC 614 consensus_6071#1 ACAAATTCTATTTATCCCCCTT 585 * * * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||