These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1647 fasta sequence [GGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTCGGCCTGGCTGCTCGCGTTTTTTACTCTGAACTCGCCGACCCGATCAACCACCGCGGCGCGTGAGTCCATTCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTTTTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGTGTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAAGCTACGGAAAGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAACTTTGTGGAAGTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTGATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTTTTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTTGATAACATTATCATATGCTAATATAATATTTCCTGG] [+] EMBL AK112090 [GGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTCGGCCTGGCTGCTCGCGTTTTTTACTCTGAACTCGCCGACCCGATCAACCACCGCGGCGCGTGAGTCCATTCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTTTTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGTGTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAAGCTACGGAAAGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAACTTTGTGGAAGTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTGATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTTTTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTTGATAACATTATCATATGCTAATATAATATTTCCTGG] [+] EMBL CB655820 [ ATTCACCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGAAGCCGCCTCGGCGGGGGAGGCGCAAAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTCGACCCCGTCCACCCCACGGCCGCGTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCAGCCGCGCGCCGCCTCCGCGCCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACCGCCACCGCCGCCGCGCCCGAACTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCAAGCCCCGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCATCAAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCACCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCc ] consensusID : consensus_6078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGGTTGGTTCCTTTGGCCCTTCATGGTTCAAATAGTCTATTGATTCATAGCATAATATTTTTAAGATTGAATAATGCTGATTCTAAACATTAGTATTAGATTTTGGGATTGTTGAATTTGATTTATCAGAAGCTTCTACA] [-] EMBL CB655821 [CGCGGCGTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGGTTGGTTCCTTTGGCCCTTCATGGTTCAAATAGTCTATTGATTCATAGCATAATATTTTTAAGATTGAATAATGCTGATTCTAAACATTAGTATTAGATTTTGGGATTGTTGAATTTGATTTATCAGAAGCTTCTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6078#0 GGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTCGGCCTGGCT 60 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 GCTCGCGTTTTTTACTCTGAACTCGCCGACCCGATCAACCACCGCGGCGCGTGAGTCCAT 120 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 TCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCAACGATTTTT 180 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 CCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCG 240 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 AACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCG 300 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 CCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCC 360 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 TTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGAC 420 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 CACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTC 480 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 CTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCC 540 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 ACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCC 600 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 TCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATC 660 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 GGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAG 720 consensus_6078#1 ---------------------------------------------CGCGGCGTCGTCGAG 15 *************** consensus_6078#0 ACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATC 780 consensus_6078#1 ACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATC 75 ************************************************************ consensus_6078#0 TTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCAT 840 consensus_6078#1 TTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCAT 135 ************************************************************ consensus_6078#0 TCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAAC 900 consensus_6078#1 TCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAAC 195 ************************************************************ consensus_6078#0 CGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTC 960 consensus_6078#1 CGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTC 255 ************************************************************ consensus_6078#0 GACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAAC 1020 consensus_6078#1 GACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAAC 315 ************************************************************ consensus_6078#0 GCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAA 1080 consensus_6078#1 GCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAA 375 ************************************************************ consensus_6078#0 GCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCT 1140 consensus_6078#1 GCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCT 435 ************************************************************ consensus_6078#0 GTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCG 1200 consensus_6078#1 GTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCG 495 ************************************************************ consensus_6078#0 GAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCCGACGAGATGTT 1260 consensus_6078#1 GAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGACGAGGTTGG 555 ************************************************ ****** * consensus_6078#0 TTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAGTTCACATGT 1320 consensus_6078#1 TTCC--------TTTGGC-------CCTTCATGGTTCAAATAGTCTATTGATTCATA-GC 599 *** ** * * **** * *** ** ** ** **** * * consensus_6078#0 GTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAAGCTACGGAA 1380 consensus_6078#1 ATAATATTTTTAAGATTGAATAATG--CTGATT-CTAAACATTAGTATTAGATTTTGGGA 656 * *** ** *** * ** * *** ** ** * * ** * ** * consensus_6078#0 AGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAACTTTGTGGAA 1440 consensus_6078#1 T-TGTTGAATTTGATTTATCAGAAGCTTCTACA--------------------------- 688 * ** *** * * * * consensus_6078#0 GTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAGAATCAGCTG 1500 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 ATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCATTTTCGTTT 1560 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 TTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTTGATAACATT 1620 consensus_6078#1 ------------------------------------------------------------ consensus_6078#0 ATCATATGCTAATATAATATTTCCTGG 1647 consensus_6078#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||