These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAAAGGCCACTNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTTTGGCCTGTTTTTCGTCATGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTGNCGCAAGGGGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCATAACCGTNGGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACANGTGGACCCTNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA] [+] EMBL AA751492 [GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAAAGGCCACTNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTTTGGCCTGTTTTTCGTCATGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTGNCGCAAGGGGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCATAACCGTNGGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACANGTGGACCCTNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA] consensusID : consensus_608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence [TGTGTAAGCCGAAATGGGAAABCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTYBTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBCCGAACTCACTATCATTAGCCAGTTCCAGTGCATG] [+] EMBL AA751290 [TGTGTAAGCCGAAATGGGAAABCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTYBTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBCCGAACTCACTATCATTAGCCAGTTCCAGTGCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_608#0 -------GNCNCTNTGGGCNANCCTCCAGAACCAAAGCCACTCTTTTTCCACGNCACCAA 53 consensus_608#1 TGTGTAAGCCGAAATGGGAAABC--TCACGACCAAAGCCACTCTTTTTC-ACGCCACCAA 57 * * **** * * ** ******************* *** ****** consensus_608#0 AGGCCACTNCGTGCNCCGTGGGCACAATTAACCATTGATTAAACACCCCACCGCATTCCA 113 consensus_608#1 AGGCCACTC-GCGCGTYBTGG-CACAAT-AACCATTGAT-AAACACCCCACCGCATTCCA 113 ******** * ** *** ****** ********** ******************** consensus_608#0 GACGTGCCGCCATCTGTTTGGCCTGTTTTTCGTCA-TGGTAAAAATGGTCGCTGAAAGGC 172 consensus_608#1 GACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGBC 173 ***************** ******** ******** ********************** * consensus_608#0 CGAACTCACTATCATTAGCCANTTCCANTGCATGTTCCTGCATNTTTNGNATGGTGATTG 232 consensus_608#1 CGAACTCACTATCATTAGCCAGTTCCAGTGCATG-------------------------- 207 ********************* ***** ****** consensus_608#0 NCGCAAGGGGCCAAACATTTNTTCCCGAAACGNGGTCATTTCTGGGGTANCATTNGAGCA 292 consensus_608#1 ------------------------------------------------------------ consensus_608#0 TAACCGTNGGNGGNTAGTATTACCTGGCCCAGACATCTTTTCCCCCCNCAGTAACAACAN 352 consensus_608#1 ------------------------------------------------------------ consensus_608#0 GTGGACCCTNCGCCAGGGTTTTTTTCACCTGNTGTTGACANCTCATCNCGTNNATCAA 410 consensus_608#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||