These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNACCANCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAAGATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGATCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACATGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACCAAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCGTTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGAAGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG] [+] EMBL OSS11516A [AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNACCANCTGAGCTCAT ] [+] EMBL OSS13129A [ TCGGTTTCCATGGATGCGGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAAGATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGATCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACATGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACCAAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCGTTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGAAGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG] consensusID : consensus_6095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGNGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTCATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGCCGCCG] [+] EMBL OSS4256A [AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATGCTTGGNGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTGTTTGTTATATAAAAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGCTTCGGTTTCCATGGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGACCAGCTGAGCTCATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGCCGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6095#0 AAAAAATTGAGGAAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATG 60 consensus_6095#1 ------------AAAAAAAAGATCACTTGGAGCCTTGAAAAGCAGCAACCAAAATTGATG 48 ************************************************ consensus_6095#0 CTTGGGGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTG 120 consensus_6095#1 CTTGGNGAGCATCCATTGGAGAGGCCCCAAAGCAAGAATCTTTTTCATTGATCACTGCTG 108 ***** ****************************************************** consensus_6095#0 TTTGTTATATAAAAGNTCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGC 180 consensus_6095#1 TTTGTTATATAAAAGATCGATCTTTTGGTTGTTATTTGCCAAGATGGAGAAGGGAGGTGC 168 *************** ******************************************** consensus_6095#0 TTCGGTTTCCATGGATNCGGCGGCGAGCATGGACATGTGGGACTTGGAGGTCCTGCCTNA 240 consensus_6095#1 TTCGGTTTCCATGGATGNAGCGGCGAGCATGGACATGTGGGACTGGGAGGTCCTGCCTGA 228 **************** ************************* ************* * consensus_6095#0 CCANCTGAGCTCATCCTCCCATGGCGGCGGCGGCCATGGCCNAGAAGTTCTTGGTGGTAA 300 consensus_6095#1 CCAGCTGAGCTCATCCTCCCATNGCGGCNGCGGCCATGGCCGAGGAGTTCTTGGTGCTCA 288 *** ****************** ***** ************ ** *********** * * consensus_6095#0 GATCAGCATCAGCTCTTGGGATTTGTCACGAAAGATTGCGTCTCATTCTTGTTGCGGTGA 360 consensus_6095#1 AGAAACCG--AGGAATCGAATCTTGACGCCGCCGCCG----------------------- 323 * * ** * * *** * * * consensus_6095#0 TCGATTGGATGACAGCTCAAGAAACCGAGGAATCGAATCTTGACGCCGNCGCCGCCGACA 420 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 TGGCNGTCGACGACGAGTTCAAAGGACATCGGCGTCGACGTGGCCGTGCCGGCCGAGACC 480 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AAGACGAGCCAAGAAGAGACCATGGCGGCCAAGGTAACAGAGGAGGAGGAGGAGGAGCCG 540 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 TTCCAGGGCTCCGATGCCAAGGTTGTCGACGGCGACGACGACGGCGGCCGGCGAANAAGA 600 consensus_6095#1 ------------------------------------------------------------ consensus_6095#0 AGAAGANGAGNAGGAGAAGGGGAAGAAGGCGGG 633 consensus_6095#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||