These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence [CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTGAAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGGTGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGAAAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCCCATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTTATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTTTGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCATATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTATCTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGGAACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTATTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCATTGACGCC-AACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA] [+] EMBL AK066560 [CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTGAAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGGTGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGAAAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCCCATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTTATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTTTGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCATATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTATCTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGGAACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTATTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCATTGACGCC AACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA] [-] EMBL CB685105 [ AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGTGCCATTGACGCCTAACCAGACATATGCCCAGCCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGAGTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATATGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTCCCTTTCGATTAATTTGTGGAGTGTATAAGAAGAGATTTCAGGGGCTAAGATATAATGGTTCAGTTTGTGCATTGGTTCACC ] consensusID : consensus_6104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 735 fasta sequence [CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGA] [+] EMBL CA765617 [CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATA ] [+] EMBL CB685104 [ aatgccttTAAAGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAACAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGA CCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCA TTGACGCCAACCAGACATATGCCCAACCTATCA TCCAAAGGTCTAGCTTCAAGGAGATCTA CCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6104#0 CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTG 60 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 AAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGG 120 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 TGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGA 180 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 AAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCC 240 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 CATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTT 300 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 ATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTT 360 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 TGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCAT 420 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 ATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTAT 480 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 CTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGG 540 consensus_6104#1 ------------------------------------------------------------ consensus_6104#0 AACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTA 600 consensus_6104#1 ---------------------------------------------CACCATCCATGTCCA 15 * * * * * consensus_6104#0 TTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA 660 consensus_6104#1 AGCAAATGATCATAATG-AGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA 74 ** * **** ****************************************** consensus_6104#0 CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGA 720 consensus_6104#1 CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAA 134 ********************************************************** * consensus_6104#0 GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT 780 consensus_6104#1 GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT 194 ************************************************************ consensus_6104#0 TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG 840 consensus_6104#1 TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG 254 ************************************************************ consensus_6104#0 GTGGACC-TGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAG 899 consensus_6104#1 GTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAG 314 ******* **************************************************** consensus_6104#0 AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAG 959 consensus_6104#1 AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAN 374 *********************************************************** consensus_6104#0 GCGCCATT-GACGCCAACCAGACATATGCCCAACCTATCAT-CCAAAGGTCTAGCTTCAA 1017 consensus_6104#1 GCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAA 434 ******** ****** ************************* ****************** consensus_6104#0 GGAGATCTACC-AAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATT 1076 consensus_6104#1 GGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTCCCTTTTCATGGATT 494 *********** ************ *********************************** consensus_6104#0 GGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATA 1136 consensus_6104#1 GGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATA 554 ************************************************************ consensus_6104#0 TATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTG 1196 consensus_6104#1 TATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTA 614 *********************************************************** consensus_6104#0 ATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCA 1256 consensus_6104#1 ATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCA 674 ************************************************************ consensus_6104#0 TTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAG 1316 consensus_6104#1 TTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAG 734 ************************************************************ consensus_6104#0 AGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATG 1376 consensus_6104#1 A----------------------------------------------------------- 735 * consensus_6104#0 AAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA 1432 consensus_6104#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||