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Oryza sativa
cluster # 6104 cluster # 6104       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6104#0 length = 1432 sequences # 2  
consensus_6104#1 length = 735 sequences # 2  

consensusID : consensus_6104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1432
fasta sequence
                              [CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTGAAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGGTGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGAAAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCCCATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTTATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTTTGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCATATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTATCTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGGAACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTATTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCATTGACGCC-AACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA]

[+] EMBL AK066560             [CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTGAAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGGTGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGAAAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCCCATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTTATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTTTGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCATATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTATCTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGGAACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTATTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCATTGACGCC AACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA]
[-] EMBL CB685105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGTGCCATTGACGCCTAACCAGACATATGCCCAGCCTATCATCCAAAGGTCTAGCTTCAAGGAGATCTACCAAAGATGGCTGGAAAGAGTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATATGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTCCCTTTCGATTAATTTGTGGAGTGTATAAGAAGAGATTTCAGGGGCTAAGATATAATGGTTCAGTTTGTGCATTGGTTCACC                                                                                                                                                                      ]


>consensus_6104#0 CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTG AAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGG TGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGA AAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCC CATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTT ATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTT TGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCAT ATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTAT CTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGG AACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTA TTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGA GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG GTGGACCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGA AAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGG CGCCATTGACGCCAACCAGACATATGCCCAACCTATCATCCAAAGGTCTAGCTTCAAGGA GATCTACCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAA AAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATA TCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTGATTT CTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTG TTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGAGCT TCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATGAAAG TTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA



consensusID : consensus_6104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 735
fasta sequence
                              [CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGA]

[+] EMBL CA765617             [CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATA                                                                                                                                                                                                                                                                  ]
[+] EMBL CB685104             [                   aatgccttTAAAGAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGACAATAATTCTTAGAGTTGCTGAACAGACCTGCAATATTAGCATTCACCGAGCAATTGCGAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATGGTGGA CCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAGGCGCCA TTGACGCCAACCAGACATATGCCCAACCTATCA TCCAAAGGTCTAGCTTCAAGGAGATCTA CCAAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAGA]


>consensus_6104#1 CACCATCCATGTCCAAGCAAATGATCATAATGAGACACAGGTGACTATTTTTAACAACGG TGCACCAAACATGACAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCA CCGAGCAATTGCAAGGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACAT GTTAGTGCCTGTTTTTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAG AGGTATCCAAGATGGTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTT CGACTGGAGGGAAGAAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACG AGTGGGATGATGANGCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAA AGGTCTAGCTTCAAGGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTC CCTTTTCATGGATTGGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCAT TATCTGAAAGAATATATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTG CTACCTTTTGCTTAATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTG GTTCAGTTTGTGCATTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAAC TAAGGGATCTCCAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6104#0      CACCATCCATGTCCAAGCAAATGATCATAATGAGGTGAGCTAATGCAAATGAGTATCTTG 60
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      AAGATAATTATAGTAATGAGATTTTCTGGCTTAACTTTTCTTTATGCAATATTTGCATGG 120
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      TGTTACTTCCACACATGTTATTTCAGAAGAGACTGTCTTTTATATTCTTTATTGATATGA 180
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      AAGTTTTTCCAGCGAGCTTTTGAGAGGATTATACTGCAGGTTTTCTGGCTTATTTTTTCC 240
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      CATATGTACTATCTACTGTATGTGTTGTTTCAAAATAGAGTAGCTGTTTTTTGCAAGCTT 300
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      ATAGAAGGATAGTTGCTCTTTACCAAGATCCTGGCTTCATGGTGTCATTAATTTATGTTT 360
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      TGTCATATAATTGGTTCGTGAGTTATATATTTCACGTGAACTGCGGTAGGTTATTCCCAT 420
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      ATTGATTTATATACATGCATAATTGCATTAGCTTATTTTGAGTTCTTGTTGATAGTGTAT 480
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      CTCAGGATTAGCAGAATGTCAGTATACTATTGCTGTTCTTATCAGCTTTTATTCAAGGGG 540
consensus_6104#1      ------------------------------------------------------------
                                                                                  

consensus_6104#0      AACTGGATCTTTCTCATGCTGTTTCAATGTTTTCAATCGATGTACTGATCTTCTTTTTTA 600
consensus_6104#1      ---------------------------------------------CACCATCCATGTCCA 15
                                                                        * * * *  *

consensus_6104#0      TTTTCATATTGTTAATTTAGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA 660
consensus_6104#1      AGCAAATGATCATAATG-AGACACAGGTGACTATTTTTAACAACGGTGCACCAAACATGA 74
                           **  *  ****  ******************************************

consensus_6104#0      CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCGA 720
consensus_6104#1      CAATAATTCTTAGAGTTGCTGAAGAGACCTGCAATATTAGCATTCACCGAGCAATTGCAA 134
                      ********************************************************** *

consensus_6104#0      GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT 780
consensus_6104#1      GGGAGATAAGTCAAGTAATGCCAATGCGGCTTACCTCAAAATACATGTTAGTGCCTGTTT 194
                      ************************************************************

consensus_6104#0      TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG 840
consensus_6104#1      TTCTTCTTATTGGAGCTGTGGTAGCATGCATTAAACTTCGGAGAAGAGGTATCCAAGATG 254
                      ************************************************************

consensus_6104#0      GTGGACC-TGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAG 899
consensus_6104#1      GTGGACCCTGCATACCAGAAGCTTGATGCGGCGGAGCTTCCTCTTTCGACTGGAGGGAAG 314
                      ******* ****************************************************

consensus_6104#0      AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAG 959
consensus_6104#1      AAAGAAGCAGATCAATCTGATCAGTGGGATGACAACTGGGGAGACGAGTGGGATGATGAN 374
                      *********************************************************** 

consensus_6104#0      GCGCCATT-GACGCCAACCAGACATATGCCCAACCTATCAT-CCAAAGGTCTAGCTTCAA 1017
consensus_6104#1      GCGCCATTTGACGCCNACCAGACATATGCCCAACCTATCATTCCAAAGGTCTAGCTTCAA 434
                      ******** ****** ************************* ******************

consensus_6104#0      GGAGATCTACC-AAAGATGGCTGGAAAGACTAATGACAATATACTCCCTTTTCATGGATT 1076
consensus_6104#1      GGAGATCTACCCAAAGATGGCTGGNAAGACTAATGACAATATACTCCCTTTTCATGGATT 494
                      *********** ************ ***********************************

consensus_6104#0      GGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATA 1136
consensus_6104#1      GGAAAAATAGTTCCAATGCCTATATCATATGATTTTTCTGTTCCATTATCTGAAAGAATA 554
                      ************************************************************

consensus_6104#0      TATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTG 1196
consensus_6104#1      TATATCCTTTTTGCCATCTTTATAATAGGAAAATTTTGTTCTCTTGCTACCTTTTGCTTA 614
                      *********************************************************** 

consensus_6104#0      ATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCA 1256
consensus_6104#1      ATTTCTGGAGTGTATAAGAAGAGACTACAGGGGCTAAGATATACTGGTTCAGTTTGTGCA 674
                      ************************************************************

consensus_6104#0      TTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAG 1316
consensus_6104#1      TTTGTTCACCAATGTAGATATGTGCACCTGATATGTTCCCTACAACTAAGGGATCTCCAG 734
                      ************************************************************

consensus_6104#0      AGCTTCGCTTCACTTGTGCATGGATTCCAACTGAGGCTCCAACTTCGTCTTGCAATCATG 1376
consensus_6104#1      A----------------------------------------------------------- 735
                      *                                                           

consensus_6104#0      AAAGTTGGATGAGAGATCCACCGAACAATGAACAAATTGTTGAGATGAATGCTATA 1432
consensus_6104#1      --------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)