cluster # 6109

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Oryza sativa
cluster # 6109 cluster # 6109 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6109#0 length = 1038 sequences # 2

consensus_6109#1 length = 471 sequences # 1
consensus_6109#2 length = 264 sequences # 1

consensusID : consensus_6109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1038
fasta sequence

                              [CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAGAATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGCTGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGTTCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCATCGGCGCCGCGGAGCGGGCGA-TC-ACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTATGCAATTCCATATTTTGC]

[+] EMBL AK120717             [CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAGAATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGCTGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGTTCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCATCGGCGCCGCGGAGCGGGCGA TC ACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTATGCAATTCCATATTTTGC]
[+] EMBL C73393               [                                                                                                                            AGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGGTTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGCACGCNTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCNTTCTCCAAGCGCACGGCGCATGCAAGGGAGCGCGTNACCAAGGTGTCCCGCGGCGCACAGCCTCAGCAGACGCAGGCGCTGAGCTTCTGCNACACCATGTACATGAACACCCAGGACANCATCGGCGCCGCGGAG GGCGGATTCAACCTTCAGAGACAAGGCTACGGCGAAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_6109#0
CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAG
AATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGC
TGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGG
TTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGC
ACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGT
TCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGC
CTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCA
TCGGCGCCGCGGAGCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC
AGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA
ACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGG
CCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGTCAT
TCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAG
AAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATC
ACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACG
TTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTT
AATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGCTG
CAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCGTA
TGCAATTCCATATTTTGC

consensusID : consensus_6109#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU081291             [TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGTCTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6109#1
TGAACACCCAGGACACCATCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTA
CGGCGAAGATCATGCTGCAGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCA
AGCAGTCCGGGATCAACAACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNC
AAAACTGCATGACACTGGCCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAA
TATGAGATGTCACGTCATTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGG
TTTTTCCTTCTTTTACAGAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAGTGT
CTAAATTTGTTAATTATCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGA
ANAANAGGGCCTTTTACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6109#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]

[-] EMBL AU176460             [TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]




>consensus_6109#2
TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCGTTTGTTGTGTAGGTC
TTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTACTGAGTTCACTAATT
TGTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6109#0      CTTGGCCTCCTGTGCCGCTGCACATATATATAGCTCCCACCACCACGAGTAATCTAACAG 60
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      AATAAATCATGGGACCAGCCCACGGCCACCTCGTCCTCCTCGTCGCCGCGGTGGCGTTGC 120
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      TGTCAGCTGGCTTCCTCCCGCACGCTGTGGCGAAGAAGGGCGGCGCCGTGCCACCGGCGG 180
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      TTGCTGACATATGCTCTCGCACTCCATTCCCAGACACGTGCAAGAGCACCGCCGGGCGGC 240
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      ACGCGTCCAAGTACCCGGTGATCGACGTCGTGGCTGTGCTCAACATGCAGGTGGACGCGT 300
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      TCTCCAAGCGCACGGCGCATGCGAGGGAGCGCGTGACCAAGGTGTCCCGCGGCGCACAGC 360
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      CTCAGCAGACGCAGGCGCTGAGCTTCTGCGACACCATGTACATGAACACCCAGGACACCA 420
consensus_6109#1      ------------------------------------------TGAACACCCAGGACACCA 18
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      TCGGCGCCGCGGAGCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC 480
consensus_6109#1      TCGGCGCCGCGGANCGGGCGATCACCTTCAGAGACAAGGCTACGGCGAAGATCATGCTGC 78
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      AGCTCGCTGTGCAGGACTTTGAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA 540
consensus_6109#1      AGCTCGCTGTGCAGGACTTTNAGTCGTGCGATCGGCCCTTCAAGCAGTCCGGGATCAACA 138
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      ACCCCTTGGAGAAGATCGACGTAGAGCTCAACCAGATGGCACAAAACTGCATGACACTGG 600
consensus_6109#1      ACCCCTTGGANAAGATCGACGTANAGCTCAACCAGATGGCNCAAAACTGCATGACACTGG 198
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      CCAGCATGATATGAGACTCATGGAGGACTGAATCGATGAGAATATGAGATGTCACGT-CA 659
consensus_6109#1      CCAGCATGATATGAGACTCATGAAGGACTGAATCGATGAGAATATGAGATGTCACGT-CA 257
consensus_6109#2      ---------------TCTTGACAGTGTCTAAATTTGTTAATTATCACGACCCGACCTGCG 45
                                      **       * ** ***   * *        **    ** * * 

consensus_6109#0      TTCGATCAGGATGTCCACGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACA 719
consensus_6109#1      TTCGATCAGGATGTCCNCGGATTTGGGGAGGACCTGGGTTTGGTTTTTCCTTCTTTTACA 317
consensus_6109#2      TTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTACCGTTTATCATTTTGTA 105
                      ** * *  * * ***     *  ***         *  ***     **  *  ****  *

consensus_6109#0      GAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAG-TGTCTAAATTTGTTAATTA 778
consensus_6109#1      GAAATTCATTTACTAATTTTGTGTTTTATTTTCTTGACAG-TGTCTAAATTTGTTAATTA 376
consensus_6109#2      CTGA---GTTCACTAATTT---GTTCCATTTGATTGATTGATGTTTTGTGTTAAAAAAAA 159
                         *    ** ********   ***  ****  ****  * *** *    **   **  *

consensus_6109#0      TCACGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAAGAAGAGGGCCTTTTA 838
consensus_6109#1      TCNCGACCCGACCTGCGTTTGTTGTGTAGGTCTTTTAACGTGGAANAANAGGGCCTTTTA 436
consensus_6109#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 219
                           *    *                *        **     ** ** *         *

consensus_6109#0      CGTTTATCATTTTGTACTGAGTTCACTAATTTGTTCCATTTGATTGATTGATGTTTTGTG 898
consensus_6109#1      CGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 471
consensus_6109#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN--------------- 264
                           *  *      *   *    *  **                               

consensus_6109#0      TTAATCTTTGTTGTTGTTAGTGTCGAATAGTTAATTACTAGGGGTTCCTTCCCCCGTTGC 958
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      TGCAGGGCAGTGTGGGTATATATATAAAGTTGTAACAACCATACGCGTTTTCAAAGCTCG 1018
consensus_6109#1      ------------------------------------------------------------
consensus_6109#2      ------------------------------------------------------------
                                                                                  

consensus_6109#0      TATGCAATTCCATATTTTGC 1038
consensus_6109#1      --------------------
consensus_6109#2      --------------------