cluster # 6111

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Oryza sativa
cluster # 6111 cluster # 6111 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6111#0 length = 721 sequences # 3

consensus_6111#1 length = 691 sequences # 1

consensusID : consensus_6111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 721
fasta sequence

                              [GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCG-TGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTT-GGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCGAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAATCTTGATTGTGTGTGATGTATGCACAGTACAAATATTACTACGAACACATCAAAAAGTGATATAAAC]

[+] EMBL AK120772             [GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCG TGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTT GGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCGAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAATCTTGATTGTGTGTGATGTATGCACAGTACAAATATTACTACGAACACATCAAAAAGTGATATAAAC]
[+] EMBL C73460               [                 ACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCA NTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCTANCCCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCGTTGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTTCGACGAGTTCCAACGGCAAGGAGGTGCCCTTTTACATCATNCCAGATCCGATTGCCCACTGTTANCGACGTGGTGGNAGGCCTTCTTG GGAGGGAAGGAGtt                                                                                                                                                                                                                                                                            ]
[+] EMBL AU165711             [                  CTCGGTGGCTTTCCTCATGGCGTGCGNTGCCCCGTACTCCGGCGT AAGCGTGNAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCG TGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCAAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAAaaaa                                                               ]




>consensus_6111#0
GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTCATGGCGTGCGCTGCCCCGTACTCCGG
CGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATCAGGAGGCCACTACGGCGAGGTCGTCA
ACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCG
ACATCGGCGACCCCCATCTCCGCTTTCTGATGGGGCGGAGCCCCTACCGGGGTTGCAGGT
CCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCG
GCGTGAGGGTGCAGCAGACCGGCGCCGTCGTTCGACCCCGCTAGCGACCTCCGACGAGTT
CCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCACTGTTACCGAC
GTGGTGGCAGGCCCTCCTTGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCT
AGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCGAGACCAGCGGCACTGGATCTGGAA
GACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCG
ATTTGTAATTTTTTTTACTGTGAAGAATATGATTGATTTGCATGGTTAAAATAATCTTGA
TTGTGTGTGATGTATGCACAGTACAAATATTACTACGAACACATCAAAAAGTGATATAAA
C

consensusID : consensus_6111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCCATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATCGGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTTCTGATGGGGCGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCAACCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGATTGATTTGCATGATTAAAAAAAAAAAAAAAAAA]

[-] EMBL CA759762             [AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCCATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATCGGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCAACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTTCTGATGGGGCGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTTGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCAACCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCAGATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTAGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTCCAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGATGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGATTGATTTGCATGATTAAAAAAAAAAAAAAAAAA]




>consensus_6111#1
AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCC
ATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATC
GGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCA
ACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTTCTGATGGGG
CGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGTT
GAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCAA
CCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCCA
GATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCTA
GGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCTC
CAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGAT
GCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGATT
GATTTGCATGATTAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6111#0      --------------------------GTGGTTCTAGGGATGAGACTCGGTGGCCTTCCTC 34
consensus_6111#1      AGAGGCCGAGCAAAGGGGGAAAGGCGGGGGTCCTAGGGATAAACCTCGTGGCCTTCCCCC 60
                                                * *** ******** *  ****  * * * ** *

consensus_6111#0      ATGGCGTGCGCTGCCCCGTACTCCGGCGTGAAGCGTGGAGGGCGGATGGGCGCAGCTATC 94
consensus_6111#1      ATGGCGTGCGCTGCCCCGTAGTCCGGCGTGAAGCGTGGAGGGGGGATGGGCCCAGCTATC 120
                      ******************** ********************* ******** ********

consensus_6111#0      AGGAGGCCACTACGGCGAGGTCGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCA 154
consensus_6111#1      GGGAGGCCACTACGGCGAGGTGGTCAACATCAACTTTCGTTGCTACCCGGTTCTACTGCA 180
                       ******************** **************************************

consensus_6111#0      ACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCCATCTCCGCTTTCTGATGGG 214
consensus_6111#1      ACACCTCGAAGAATGGCGAGGCAGCGACATCGGCGACCCCAATCTCCGCTT-CTGATGGG 239
                      **************************************** ********** ********

consensus_6111#0      GCGGAGCCCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGT 274
consensus_6111#1      GCGGAGCTCCTACCGGGGTTGCAGGTCCGATACAGACGGAGTATGGCACCTCCCAGGGGT 299
                      ******* ****************************************************

consensus_6111#0      TGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGCGCCGTCGTTCG 334
consensus_6111#1      TGAGCAGCCAGCATTGGTAGCCATCGGCGTGAGGGTGCAGCAGACCGGGGCCGTCGTTCA 359
                      ************************************************ ********** 

consensus_6111#0      ACCCCGCTAGCGACCTCCGACGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCC 394
consensus_6111#1      ACCCCGCTAGCGACCTCCGATGAGTTCCAACGGCAAGGAGGTGCCCTCTCACATCATCCC 419
                      ******************** ***************************************

consensus_6111#0      AGATCCGATTGCCCACTGTTACCGACGTGGTGGCAGGCCCTCCTTGG-AGGGAAGGAGCT 453
consensus_6111#1      AGATCCGATTGCCCATTGTTACCGACGTGGTGGCAGGCCCTCCTTGGGAGGGAAGGAGCT 479
                      *************** ******************************* ************

consensus_6111#0      AGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCT 513
consensus_6111#1      AGGACGTTGAAGCAACTGCTGGCTCCTAGACTGGGTCGCCGACGCTGGTTGCATCCATCT 539
                      ************************************************************

consensus_6111#0      CCGAGACCAGCGGCACTGGATCTGGAAGACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGA 573
consensus_6111#1      CCAAGACCAGCGGCACTGGATCTGGATTACTCCTGCTGTCTCTCCTCCCCGAGGAGGAGA 599
                      ** ***********************  ********************************

consensus_6111#0      TGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAATTTTTTTTACTGTGAAGAATATGAT 633
consensus_6111#1      TGCGTTTCTTTTATTCTTCCTCTTTCGATTTGTAAATTTTTTTACTGTGAAGAATATGAT 659
                      *********************************** ************************

consensus_6111#0      TGATTTGCATGGTTAAAATAATCTTGATTGTGTGTGATGTATGCACAGTACAAATATTAC 693
consensus_6111#1      TGATTTGCATGATTAAAAAAAAAAAAAAAAAA---------------------------- 691
                      *********** ****** **     *                                 

consensus_6111#0      TACGAACACATCAAAAAGTGATATAAAC 721
consensus_6111#1      ----------------------------