These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1631 fasta sequence [GGTTTGGGGGAGGGGGAGGGGGAGGGGATGCCGGAGCTGCCGGAGGTGGAGGCGGCGAGGAGGGCGCTGGAGGCGCACTGCGTGGGGAGGAGGATCGCGCGCTGCGCGGTGGCGGATGACCCCAAGGTGGTGGTCGCCGCCGCCGGGGGGCGCGTGGCGTTCGAGCGCGCCATGGTCGGCCGGACCATCGTCGCCGCGCGGCGGAGGGGCAAGAACCTCTGGCTCCGCCTCGACGCCCCTCCATTCCCCTCCTTCCAGTTCGGGATGGCAGGTGCGATCTACATTAAGGGAGTTCCTGTGACCAAGTACAAGAGATCAGTTGTCAGTTCTACAGACGAGTGGCCCTCCAAGTACTCCAAATTTTTTGTTCAACTTGATGATGGCTTAGAGTTTTCCTTCACTGATAAGAGGCGGTTTGCAAGAGTTCGGTTGTTTGAAGATCCCGAAACTGTACCCCCGATTTCTGAGTTAGGACCAGATGCTCTCTTTGAGCCGATGTCTTCTGACAGTTTTGCGGACTCGCTGAGCAGAAAGAAGATTGGAATAAAAGCTCTTCTACTCGATCAGAGCTTCATATCAGGAATTGGTAATTGGATTGCAGATGAGGTGCTTTACCAGTCGAGAACCCATCCATTACAGATTGCTTCAAGTCTATCCAGGGAGAGTTGTGAAGCACTACACCAAAGCATCCAAGAGGTTGTGAAATATGCTGTTGAAGTTGATGCTGATTGTGACTGCTTTCCTGTGGAATGGTTATTCCATCACCGATGGGGCAAGAAGCCTGGTAAAGTCAATGGACAGAAAATTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTCAAACCACCACCTAGGTTATCTTTTTTTATTTTTTTTTAAGACGGAAGAAGTAAGGATGAATGTATACACACATGCTTGTCTATCATTCTTAAGATTTGAGTCTCTTGGGGACAGAGAGTAATCCATAGATT] [+] EMBL AK065376 [GGTTTGGGGGAGGGGGAGGGGGAGGGGATGCCGGAGCTGCCGGAGGTGGAGGCGGCGAGGAGGGCGCTGGAGGCGCACTGCGTGGGGAGGAGGATCGCGCGCTGCGCGGTGGCGGATGACCCCAAGGTGGTGGTCGCCGCCGCCGGGGGGCGCGTGGCGTTCGAGCGCGCCATGGTCGGCCGGACCATCGTCGCCGCGCGGCGGAGGGGCAAGAACCTCTGGCTCCGCCTCGACGCCCCTCCATTCCCCTCCTTCCAGTTCGGGATGGCAGGTGCGATCTACATTAAGGGAGTTCCTGTGACCAAGTACAAGAGATCAGTTGTCAGTTCTACAGACGAGTGGCCCTCCAAGTACTCCAAATTTTTTGTTCAACTTGATGATGGCTTAGAGTTTTCCTTCACTGATAAGAGGCGGTTTGCAAGAGTTCGGTTGTTTGAAGATCCCGAAACTGTACCCCCGATTTCTGAGTTAGGACCAGATGCTCTCTTTGAGCCGATGTCTTCTGACAGTTTTGCGGACTCGCTGAGCAGAAAGAAGATTGGAATAAAAGCTCTTCTACTCGATCAGAGCTTCATATCAGGAATTGGTAATTGGATTGCAGATGAGGTGCTTTACCAGTCGAGAACCCATCCATTACAGATTGCTTCAAGTCTATCCAGGGAGAGTTGTGAAGCACTACACCAAAGCATCCAAGAGGTTGTGAAATATGCTGTTGAAGTTGATGCTGATTGTGACTGCTTTCCTGTGGAATGGTTATTCCATCACCGATGGGGCAAGAAGCCTGGTAAAGTCAATGGACAGAAAATTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTCAAACCACCACCTAGGTTATCTTTTTTTATTTTTTTTTAAGACGGAAGAAGTAAGGATGAATGTATACACACATGCTTGTCTATCATTCTTAAGATTTGAGTCTCTTGGGGACAGAGAGTAATCCATAGATT] [+] EMBL CA764247 [ TGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACCCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTG ] [+] EMBL AK058461 [ TGGTGGCAAGGAGAGACCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAGCCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGACGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTC ] consensusID : consensus_6117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAAACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTAAAAAAAAAAAAAA] [-] EMBL CA762540 [TTGAGTTCATAACAGCTGGTGGCAGGACTACAGCATACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAACCCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCTGATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAGAGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAACCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACCAGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCCCGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAAACTCGCTGATGTTCGCAAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGGTGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTACCAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAAAACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6117#0 GGTTTGGGGGAGGGGGAGGGGGAGGGGATGCCGGAGCTGCCGGAGGTGGAGGCGGCGAGG 60 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 AGGGCGCTGGAGGCGCACTGCGTGGGGAGGAGGATCGCGCGCTGCGCGGTGGCGGATGAC 120 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 CCCAAGGTGGTGGTCGCCGCCGCCGGGGGGCGCGTGGCGTTCGAGCGCGCCATGGTCGGC 180 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 CGGACCATCGTCGCCGCGCGGCGGAGGGGCAAGAACCTCTGGCTCCGCCTCGACGCCCCT 240 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 CCATTCCCCTCCTTCCAGTTCGGGATGGCAGGTGCGATCTACATTAAGGGAGTTCCTGTG 300 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 ACCAAGTACAAGAGATCAGTTGTCAGTTCTACAGACGAGTGGCCCTCCAAGTACTCCAAA 360 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 TTTTTTGTTCAACTTGATGATGGCTTAGAGTTTTCCTTCACTGATAAGAGGCGGTTTGCA 420 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 AGAGTTCGGTTGTTTGAAGATCCCGAAACTGTACCCCCGATTTCTGAGTTAGGACCAGAT 480 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 GCTCTCTTTGAGCCGATGTCTTCTGACAGTTTTGCGGACTCGCTGAGCAGAAAGAAGATT 540 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 GGAATAAAAGCTCTTCTACTCGATCAGAGCTTCATATCAGGAATTGGTAATTGGATTGCA 600 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 GATGAGGTGCTTTACCAGTCGAGAACCCATCCATTACAGATTGCTTCAAGTCTATCCAGG 660 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 GAGAGTTGTGAAGCACTACACCAAAGCATCCAAGAGGTTGTGAAATATGCTGTTGAAGTT 720 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 GATGCTGATTGTGACTGCTTTCCTGTGGAATGGTTATTCCATCACCGATGGGGCAAGAAG 780 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 CCTGGTAAAGTCAATGGACAGAAAATTGAGTTCATAACAGCTGGTGGCAGGACTACAGCA 840 consensus_6117#1 -------------------------TTGAGTTCATAACAGCTGGTGGCAGGACTACAGCA 35 *********************************** consensus_6117#0 TACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAAC 900 consensus_6117#1 TACGTGCCACAACTGCAGAAGCTGACTGGAATGCAATCTAGCAAAGTAGTCATTGCTAAC 95 ************************************************************ consensus_6117#0 CCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCT 960 consensus_6117#1 CCAGAACAAGTGGCAGAGAACGATGATGCGAAGGAAATAGACACAGATCCAGAAGATGCT 155 ************************************************************ consensus_6117#0 GATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAG 1020 consensus_6117#1 GATAATTTGAATACAAAGAAGCGAGGAGCAACTTCTAGGGTTGCCAGGGGAAAGCAAAAG 215 ************************************************************ consensus_6117#0 AGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAA 1080 consensus_6117#1 AGAGATGCCATAGGTGCCCTTTCCAGAAAGACAAGGAAAAATGGTGGTGGCAAGGAGAAA 275 ************************************************************ consensus_6117#0 CCAGGTAGTGACTATAGTGAAGATGATGGTGAGACTGCTGAACCAAACAAAGTTAGCACC 1140 consensus_6117#1 CCAGGTAGTGACTATAGTGAAGATGATGCTGAGACTGCTGAACCAAACAAAGTTAGCACC 335 **************************** ******************************* consensus_6117#0 AGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCC 1200 consensus_6117#1 AGTAGCAAGGGCGAGAAGGCAGATCCGGTGAGAAGATCATCAAGGACCGCATCGAAACCC 395 ************************************************************ consensus_6117#0 CGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAGACTCGCTGATGTTCGC 1260 consensus_6117#1 CGCCAGGTAAATAAATTAAAAGAAAGATAGCAAGAGATGAAGAAACTCGCTGATGTTCGC 455 ******************************************* **************** consensus_6117#0 AAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGG 1320 consensus_6117#1 AAAGATCATTTTGGTGTGTGTATAGCTTTAGCTTTAGATGCTCTCCGATGGCCATATTGG 515 ************************************************************ consensus_6117#0 TGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTAC 1380 consensus_6117#1 TGAAATCCTTGTAGCCTTGATTAGTGAGTTCTTTTCTCTGTGTCTTGTGCGCTACTGTAC 575 ************************************************************ consensus_6117#0 CAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAA 1440 consensus_6117#1 CAGATTATTCAAAGATGCCCTCTTGGAAATTGGAAGGTGTAATCGTTCCATACTGGGCAA 635 ************************************************************ consensus_6117#0 AACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTATGTTGCTCGTGTC 1500 consensus_6117#1 AACATATGCTTCTCCTGTGCAACATGAACAATGACATATCTAGGCTAAAAAA---AAAAA 692 *********************************************** consensus_6117#0 AAACCACCACCTAGGTTATCTTTTTTTATTTTTTTTTAAGACGGAAGAAGTAAGGATGAA 1560 consensus_6117#1 AAA--------------------------------------------------------- 695 *** consensus_6117#0 TGTATACACACATGCTTGTCTATCATTCTTAAGATTTGAGTCTCTTGGGGACAGAGAGTA 1620 consensus_6117#1 ------------------------------------------------------------ consensus_6117#0 ATCCATAGATT 1631 consensus_6117#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||