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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2101 fasta sequence
[GCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTCCCCCCCCCCCCACCTCCTCCTCCTCGATCCCCTCGCCGCGAAGATCCGATCCCGAGCACGAGCAGCACACCGATCGGTGGGTGGCCTCCTCCGGCAGCCTGAGGGGTGGCGGGAATGGCGGCGGCGGCGGCGATGGCCCTCTGACGCGACGCGCGCCTTTCTCTGGCTTTTGGCTGTGGTGGGTGCTTGTGGGTGGAGAGAGAGAGGGAGAGGGAGAGAGAGATGGGCTGCTTCTCGTGCTTCGACTCGCCCGCGGAGGAGCAGCTGAACCCCAAGGTGGGAGGGCCGTACGGCGGCGGCTCCTCCTCCTCCGCCGCCGCGGCCGCGTACGGCGGCGGCGGCGGTTCCAGCGCTGGTCGGCATGGGGAGAGGGGCGGTGGTTACCCGGACCTGCACCACCACCACCAGCAGCAGCAGCTGCCCATGGCAGCGCCGCGCGTCGAGAAGCTCTCCGCAGGGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGCCAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAATTTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGAGCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAGAGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCTGATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGGATCATTGGAAGATCATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAAATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACGACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACGATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGAGGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGA-CAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTAGATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGTGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGA]
[+] EMBL AK120921 [GCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTCCCCCCCCCCCCACCTCCTCCTCCTCGATCCCCTCGCCGCGAAGATCCGATCCCGAGCACGAGCAGCACACCGATCGGTGGGTGGCCTCCTCCGGCAGCCTGAGGGGTGGCGGGAATGGCGGCGGCGGCGGCGATGGCCCTCTGACGCGACGCGCGCCTTTCTCTGGCTTTTGGCTGTGGTGGGTGCTTGTGGGTGGAGAGAGAGAGGGAGAGGGAGAGAGAGATGGGCTGCTTCTCGTGCTTCGACTCGCCCGCGGAGGAGCAGCTGAACCCCAAGGTGGGAGGGCCGTACGGCGGCGGCTCCTCCTCCTCCGCCGCCGCGGCCGCGTACGGCGGCGGCGGCGGTTCCAGCGCTGGTCGGCATGGGGAGAGGGGCGGTGGTTACCCGGACCTGCACCACCACCACCAGCAGCAGCAGCTGCCCATGGCAGCGCCGCGCGTCGAGAAGCTCTCCGCAGGGGCTGAGAAGACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGCCAATGGGAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAATTTCAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGAGAGCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAGAGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCTGATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGGATCATTGGAAGATCATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACACAAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAATCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCATCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAAATCTCATGTCTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACGACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACGATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGAGGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGA CAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTAGATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGTGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGA]
[+] EMBL CF309099 [ CTCCTGAGTATGCTATGACAGGACAGTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGGTCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACGACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACGATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGAGGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACCAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGG ]
consensusID : consensus_6131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[TCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTATATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGAGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGAGTTCCACCA]
[+] EMBL CB633240 [TCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAAAACGCCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAAGTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGATTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGTGGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGGCGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCCAACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTGTTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGTTATATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGAGAATTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTGAGTTCCACCA]
[-] EMBL CB633241 [ CCAAAAACCCAATAAAAAACGCCTTTCCTACCTGGCATCTCAATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAAGGTTGGCGAGATCGGCAGGGTAGTTTCCAGGACCGCCGAAGCCAGCAGCTTTGGCCACAAGTCCCCAAACAAGGACAGGGAGGATTCCCCCAAAGAGCCCCCAGTTATCCTGAACAAGAATTTCGACAGGGAGCGGATCGTGCCGGAGGCAAATATCTGGGGTGACAGGGAACGGATGGTGGCTGAGCCAAAGATCTGGGGTGATAGGGAGCGGCTGGTAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6131#0 GCTTCCTCCTCGCTCTCCCTCCCTCTCTTCGCTTCCTTCCCCTCCAAAAACCCAATAAAA 60
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 AACGCCTTTCCTCCCCCCCCCCCCACCTCCTCCTCCTCGATCCCCTCGCCGCGAAGATCC 120
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GATCCCGAGCACGAGCAGCACACCGATCGGTGGGTGGCCTCCTCCGGCAGCCTGAGGGGT 180
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GGCGGGAATGGCGGCGGCGGCGGCGATGGCCCTCTGACGCGACGCGCGCCTTTCTCTGGC 240
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 TTTTGGCTGTGGTGGGTGCTTGTGGGTGGAGAGAGAGAGGGAGAGGGAGAGAGAGATGGG 300
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 CTGCTTCTCGTGCTTCGACTCGCCCGCGGAGGAGCAGCTGAACCCCAAGGTGGGAGGGCC 360
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GTACGGCGGCGGCTCCTCCTCCTCCGCCGCCGCGGCCGCGTACGGCGGCGGCGGCGGTTC 420
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 CAGCGCTGGTCGGCATGGGGAGAGGGGCGGTGGTTACCCGGACCTGCACCACCACCACCA 480
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GCAGCAGCAGCTGCCCATGGCAGCGCCGCGCGTCGAGAAGCTCTCCGCAGGGGCTGAGAA 540
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GACGAGGGTGAAGAGCAATGCAATACTAAGGGAACCTTCTGCGCCCAAGGATGCCAATGG 600
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GAATGTAATATCAGCACAGACTTTCACCTTCCGAGAACTCGCGACCGCCACCAGGAATTT 660
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 CAGGCCAGAGTGCTTCCTGGGCGAAGGAGGCTTTGGGCGCGTTTATAAGGGCCGCCTCGA 720
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GAGCACTGGCCAGGTTGTGGCTATAAAGCAGCTTAATAGAGATGGGCTTCAAGGAAACAG 780
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 AGAATTTCTAGTGGAAGTTCTAATGCTCAGTTTGTTACATCATCAAAATCTTGTTAATCT 840
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GATTGGCTATTGTGCTGACGGAGATCAACGTCTTCTTGTTTATGAATACATGCACTTTGG 900
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 ATCATTGGAAGATCATTTGCATGATCTACCTCCTGATAAGGAAGCATTGGATTGGAACAC 960
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 AAGGATGAAAATTGCGGCTGGTGCTGCTAAGGGACTAGAGTACCTTCATGACAAAGCAAA 1020
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 TCCACCAGTTATTTATAGAGACTTCAAGTCATCAAACATTCTCTTAGATGAGAGTTTCCA 1080
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 TCCAAAGCTGTCTGACTTTGGTCTTGCAAAGTTGGGTCCTGTTGGTGACAAATCTCATGT 1140
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 CTCTACTCGTGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCTATGACAGGACA 1200
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 GTTGACAGTTAAGTCTGATGTATATAGCTTTGGAGTTGTGTTGCTTGAGTTGATTACTGG 1260
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 TCGTCGGGCGATCGACAGCACTAGGCCACATGGGGAGCAAAATCTTGTCTCATGGGCACG 1320
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 ACCTCTTTTCAACGACAGAAGAAAGCTCCCAAAAATGGCTGACCCAAGACTGGAGGGACG 1380
consensus_6131#1 ------------------------------------------------------------
consensus_6131#0 ATACCCCATGCGTGGACTTTACCAAGCACTTGCAGTGGCATCTATGTGCATTCAGTCGGA 1440
consensus_6131#1 ----------------------------------------TCTCCCTCCCTCTCTTCGC- 19
*** * * * ***
consensus_6131#0 GGCTGCGTCGCGTCCACTTATTGCAGATGTTGTGACTGCTCTTTCCTACCTGGCATCTCA 1500
consensus_6131#1 --TTCCTTCCCCTCCAAAAACCCAATAAAAAACG-----CCTTTCCTACCTGGCATCTCA 72
* * ** * **** * * * * ********************
consensus_6131#0 ATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAA 1560
consensus_6131#1 ATCATATGACCCTAATGCGGCTCATGCTTCAAGAAAGCCAGGTGGCGATCAGCGAAGCAA 132
************************************************************
consensus_6131#0 GGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAA 1620
consensus_6131#1 GGTTGGCGAGAACGGCAGGGTAGTCTCCAGGAACGACGAAGCCAGCAGCTCTGGCCACAA 192
************************************************************
consensus_6131#0 GTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGA 1680
consensus_6131#1 GTCACCAAACAAGGACAGGGAGGATTCCCCGAAAGAGCCCCCAGGTATCCTGAACAAGGA 252
************************************************************
consensus_6131#0 TTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGT 1740
consensus_6131#1 TTTCGACAGGGAGCGGATGGTGGCGGAGGCAAAGATGTGGGGCGACAGGGAACGGATGGT 312
************************************************************
consensus_6131#0 GGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGG 1800
consensus_6131#1 GGCTGAGGCAAAGATGTGGGGTGATAGGGAGCGGATGGTAGCCGAGGCAAAGATGTGGGG 372
************************************************************
consensus_6131#0 CGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCC 1860
consensus_6131#1 CGAGAATTGGCGGGATAAGAGACGTGCGATCGAGAACGGGCAGGGGAGTCTGGATTCCCC 432
************************************************************
consensus_6131#0 AACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTG 1920
consensus_6131#1 AACTGAAAATGGCTAGGAGCAGGGCAGCGAGGGGTTGATCCATCCACCCATGTATGTCTG 492
************************************************************
consensus_6131#0 TTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGT 1980
consensus_6131#1 TTTATTTCCAACACTATTTGCTTTCCTGTGGCAGGGAGAGGGGAGGGAGGGACGGTGGGT 552
************************************************************
consensus_6131#0 TAGATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGTGAA 2040
consensus_6131#1 TATATGTACATTTCTAGAGAAAAAGAGAGAAGAAACGGGAGCTTTGAACTGGATAGAGAA 612
** ***************************************************** ***
consensus_6131#0 TTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTG 2100
consensus_6131#1 TTCATGTTGTTGTACTTGTAAATTCTCAGAAATTTTTGTGAGAATGAAAGGACACTTTTG 672
************************************************************
consensus_6131#0 A--------- 2101
consensus_6131#1 AGTTCCACCA 682
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||