These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 891 fasta sequence [GCCGCTCTCCCCCCACTCCGGCGTCGCTCTCCATCCCCCCACCACCGCCGGCGGCGCCGCTCCCCCTCACCCCCAAGGCCAAGTCGTAAGCCAGCCGTCGAGGCCATGTCGTCGTCTTCCTCCTCCTTCCCGACCTCTCGCTCCCCTTTCCCCGCCGGCGCCGGCGCCGGCACCAGCGGGGGCGGAGGAGGAGGAGGAGGGGGCTCCGGCGGCGGAGGTGGGGGTGGAAGATGGAGCGGCGTGCGCCCCTGGGGCTCCAGCGGCGGCACGTCGGTGTCGTCGTCGGGGAAGCGGATTCAGAAGGAGCTGATGGACCTCAACGCCTCCGACTGCTCCGCCGGCCCTAAGGGCGACAACCTCTACCACTGGCTCTCCACCATCATCGGACCTCAGGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAACTTTCAAGACAAGGATTTATCACTGCAATGTTGACTCCACTGGTAACTTGAGTATGGACATTTTAAGGGAAGGATGGAGTCCTGCTTTAACTATTTCAAAGGTGCTACTTGCCATTAAAGCCATCATAACAAACCCAGATCCATACTGCCCACTTGTGCCGAGCATTGGACATTTATACTTGACTGATAGAACTAAGCATGATGAAATAGCTGCGGAGTGGACGATGAGGTTTGCAAGATAGGGAGTTCCATCTGCAGCTAAGCAAGATCACTAACTCCGTAAATGAATATATTTGGTGTACCCTGAGATGTACAATGTTGGGAAAAGATCAATACTTTGTTTAGGTTGACTGTGACATAAGATGTACCTGTGCATTTTATATTAGACAATTATTATGTTGTTAGCTTTTAGGTGGCAG] [+] EMBL AK111080 [GCCGCTCTCCCCCCACTCCGGCGTCGCTCTCCATCCCCCCACCACCGCCGGCGGCGCCGCTCCCCCTCACCCCCAAGGCCAAGTCGTAAGCCAGCCGTCGAGGCCATGTCGTCGTCTTCCTCCTCCTTCCCGACCTCTCGCTCCCCTTTCCCCGCCGGCGCCGGCGCCGGCACCAGCGGGGGCGGAGGAGGAGGAGGAGGGGGCTCCGGCGGCGGAGGTGGGGGTGGAAGATGGAGCGGCGTGCGCCCCTGGGGCTCCAGCGGCGGCACGTCGGTGTCGTCGTCGGGGAAGCGGATTCAGAAGGAGCTGATGGACCTCAACGCCTCCGACTGCTCCGCCGGCCCTAAGGGCGACAACCTCTACCACTGGCTCTCCACCATCATCGGACCTCAGGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAACTTTCAAGACAAGGATTTATCACTGCAATGTTGACTCCACTGGTAACTTGAGTATGGACATTTTAAGGGAAGGATGGAGTCCTGCTTTAACTATTTCAAAGGTGCTACTTGCCATTAAAGCCATCATAACAAACCCAGATCCATACTGCCCACTTGTGCCGAGCATTGGACATTTATACTTGACTGATAGAACTAAGCATGATGAAATAGCTGCGGAGTGGACGATGAGGTTTGCAAGATAGGGAGTTCCATCTGCAGCTAAGCAAGATCACTAACTCCGTAAATGAATATATTTGGTGTACCCTGAGATGTACAATGTTGGGAAAAGATCAATACTTTGTTTAGGTTGACTGTGACATAAGATGTACCTGTGCATTTTATATTAGACAATTATTATGTTGTTAGCTTTTAGGTGGCAG] consensusID : consensus_6144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 698 fasta sequence [TTTTTTTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAAGAACTAAGAATTAGCTTC-TTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGAT-ATAATTGTTGTATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTCGAAAGTCTACCTTCACCGGACTTCTTTTATGTTCTTCAAA] [+] EMBL CA762609 [TTTTTCTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCCCCCATGGTAAGAACTAAGAATTAGCTTCTTTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGATAATAATTGTTGNATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGCTTAGTAAATGCATAGGGTATTTTGGTTTGAAAGTCTACCTTCA ] [+] EMBL CA762608 [ TTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAAGAACTAAGAATTAGCTTC TTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGAT ATAATTGTTGTATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTCGAAAGTCTACCTTCACCGGACTTCTTTTATGTTCTTCAAA] [+] EMBL CA762607 [ TTTTTTTTTTCAAGTTTGGAATTAGGGTGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTGATCTAATGCAGTGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATTTTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAAGAACTAAGAATTAGCTTC TTTTTTTTTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGATCATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCTCCTTGTCTGTGTGCATTCTACCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTATTGGAACAAATATCTAGAATAAATATGGCATTCCCTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGAAGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTAAGAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATAGAAATTCAAATAGGATGGATAATTGGTTGGGAT ATAATTGTTGTATAGCTAGTTCTACTTCACTATGTGAACAGGGTATTACAAAAGTGATGAACATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTCGAAAGTCTACCTTCACCGGACTTCTTTTATGTTCTTCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6144#0 GCCGCTCTCCCCCCACTCCGGCGTCGCTCTCCATCCCCCCACCACCGCCGGCGGCGCCGC 60 consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 TCCCCCTCACCCCCAAGGCCAAGTCGTAAGCCAGCCGTCGAGGCCATGTCGTCGTCTTCC 120 consensus_6144#1 ------------------------------------------------------------ consensus_6144#0 TCCTCCTTCCCGACCTCTCGCTCCCCTTTCCCCGCCGGCGCCGGCGCCGGCACCAGCGGG 180 consensus_6144#1 --------------------------TTTTTTTTTTTTTTTCAAGTTTGGAATTAG--GG 32 *** * ** * ** ** consensus_6144#0 GGCGGAGGAGGAGGAGGAGGGGGCTC-CGGCGGCGGAGGTGGGGGTGGAAGATGGAGCGG 239 consensus_6144#1 TGTGGAGTGTAGAGTGAACTAGTCTTATGACCACCTTCACTTTGTTG--ATCTAATGCAG 90 * **** * * * * ** * * * * ** * * ** * consensus_6144#0 CGTGCGCCCCTGGGGCTCCAGCGGCGGCACGTCGGTGTCGTCGTCGGGGAAGCGGATTCA 299 consensus_6144#1 TGCTCATCTTGTAGGATCTCCGTATGAAGGAGGGATATT-TTTCCTCGATATTGTATTCC 149 * * * ** ** * * * * * * * * * **** consensus_6144#0 GAAGGAGCTGATGGACCTCAACGCCTCCGACTGCTCCGCCGGCCCTAAGGGCGACAACCT 359 consensus_6144#1 CAATTGACT-ATCCGTTTAAACCTCCCATGGTAAGA-ACTAAGAATTAGCTTCTTTTTTT 207 ** ** ** * *** * * * * * ** * consensus_6144#0 CTACCACTGGCTCTCCACCATCATCGGACCTCAGGGATCTCCGTATGAAGGAGGGATATT 419 consensus_6144#1 TTTCTGTTTGCTTAAATGGGCTGTTGGTTATGAGGTGTCTGGCTTTCTACGAGA-----T 262 * * * *** * ** * *** *** * * * *** * consensus_6144#0 TTTCCTCGATATTGTATTCCCAATTGACTATCCGTTTAAACCTCCCATGGTAACTTTCAA 479 consensus_6144#1 CATATAGAAGCTTAAGTTGTAACTTGACATTTTCTCT---CCTTGTCTGTGTGCATTCTA 319 * * ** ** * ***** * * * *** ** * *** * consensus_6144#0 GACAAGGATTTATCACTGCAATGTTGACTCCACTGGTAACTTGAGTATGGACATTTTAAG 539 consensus_6144#1 CCTAATGCTGTGATTCATGAGTGATCATATCGCTGTTA---TTGGAACAAATATCT-AGA 375 ** * * * * * ** * * * *** ** * * * * ** * * consensus_6144#0 GGAAGGATGGAGTCCTGCTTTAACTATTTCAAAGGTGCTACTTGCCATTAAAGCCATCAT 599 consensus_6144#1 ATAAATATGGCATTCC-CTTCAGTAACTATTGATAGACGACTATTGATTTACCGCGTGGA 434 ** **** * * *** * * * * * *** *** * * * consensus_6144#0 AACAAACCCAGATCCATACTGCCCACTTGTGCCGAGCATTGGACATTTATACTTGACTGA 659 consensus_6144#1 AGTGTGGTTAAGGTAACACGGGAAATGCTTGCATCCAAAGAAATGTTTTTA--------A 486 * * * ** * * *** * * *** ** * consensus_6144#0 TAGAACTAAGCATGA-TGAAATAGCTGCGGAGTGGACGATGAGGTTTGCAAGATAGGGAG 718 consensus_6144#1 GAGACATGCGCATGTCTAAAATCTTGAAGAAGTGGAATA-GAAATTC---AAATAGGATG 542 *** * ***** * **** * ****** * ** ** * ***** * consensus_6144#0 TTCCATCTGCAGCTAAGCAAGATCACTAACTCCGTAAATGAATATATTTGGTGTACCCTG 778 consensus_6144#1 GATAATTGGTTG--GGATATAATTGTTGTATAGCTAGTTCTACTTCACTA-TGTGAACAG 599 ** * * * ** * * ** * * * * *** * * consensus_6144#0 AGATGTACAATGTTGGGAAAAGATCAATACTTTGTTTAGGTTGACTGTGACATAAGATGT 838 consensus_6144#1 GGTATTACAAAAGTGATGAAC-ATTGGTATGTTTAGTAAATGCATAGGGAATTTTGATTC 658 * ***** ** ** ** ** ** ** * * * ** * *** consensus_6144#0 ACCTGTGCATTTTATATTAGACAATTATTATGTTGTTAGCTTTTAGGTGGCAG 891 consensus_6144#1 GAAAGTCTACCTT-CACCGGACTTCTTTTATGTTCTTCAAA------------ 698 ** * ** * *** * ******* ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||