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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 940 fasta sequence
[TTTTTTGCATGTCAATATATTAGCAAGAGAGAAAATATTGTACAACGGCGATATTCCGAAGTGGTCACGAGGGAGGGTTTTACACGAGGAGAAGGGAGAGTAAGGCTAAGGTAAGCTAGGTAAAAACAGGTCCCGAACAATAAAAATAGCTGGAAAATGAAAAAAAAGAAACGGGGACTAAAGTAACATATTAACGCTTACCTGCTAGTTTTTGTAAGTTCCTCTTGAATTTAGCCCGTTTCTCTTCCTGCTTGAACTGCCCCGGAAAAATAGACAGAATCCTTCCTGGAAGATTGGAAGTAGACAGAATCAGGCGTCCTGGCCATTAGTCCATTACCTCCATACGAGAGTCTCCATGACCAGTTGAGAGAGGCTCTCTGTCCAACC-AATGCTCTGTTACTTTCATCTGTAAAGATGAAAGGGAATTTCATTGCTGGAGACTGCTCCATCTTCCATGGAATCCCTCAATTCAGTGCCACCCATTCGTCACTGCTGATCCACTCCTTCTCTATTTCCTTGCTGGNAAGCAGTCCGCTGATCTGTTTTTGCACTGCATACGCTTCGCTGAAGCTGGAACTCGATCAACCTGCTACCTCTAGGACTAGGAGTACTCCGACCATGGCCACTCCGACTAACAGCGATCACCTCCGGTTTGCCGAGCAAACTGTAAGCCTCTCTGTAACCTTTCCAGTGCGTCGATCTCCCACTCCAGCAACTGCCATATATATCTCCGATTTCTCCTAGCTTTCCTGTAGCACTGCATCCTGAGCTCCAGAGTCCATAAACGCTTGCTCATTTCCTCTCTTTCCATACGCCTGCAGCTTGATCACCGGTGCCATTGCATGAACACACGCTCTCTCTCTCTCTCTCTCAAGAGTTTGCCCAGGTGTTTGTGTGTAGAAATTCTACAGAAGACCCGGTGCTCAAAGGTTGTGCATAC]
[+] EMBL CF311444 [TTTTTTGCATGTCAATATATTAGCAAGAGAGAAAATATTGTACAACGGCGATATTCCGAAGTGGTCACGAGGGAGGGTTTTACACGAGGAGAAGGGAGAGTAAGGCTAAGGTAAGCTAGGTAAAAACAGGTCCCGAACAATAAAAATAGCTGGAAAATGAAAAAAAAGAAACGGGGACTAAAGTAACATATTAACGCTTACCTGCTAGTTTTTGTAAGTTCCTCTTGAATTTAGCCCGTTTCTCTTCCTGCTTGAACTGCCCCGGAAAAATAGACAGAATCCTTCCTGGAAGATTGGAAGTAGACAGAATCAGGCGTCCTGGCCATTAGTCCATTACCTCCATACGAGAGTCTCCATGACCAGTTGAGAGAGGCTCTCTGTCCAACC AATGCTCTGTTACTTTCATCTGTAAAGATGAAAGGGAATTTCATTGCTGGAGACTGCTCCATCTTCCATGGAATCCCTCAATTCAGTGCCACCCATTCGTCACTGCTGATCCACTCCTTCTCTATTTCCTTGCTGGNAAGCAGTCCGCTGATCTGTTTTTGCACTGCATACGCTTCGCTGAAGCTGGAACTCGATCA ]
[-] EMBL CF311443 [ CATGACCAGTTGAGAGAGGCTCTCTGTCCAACCAAATGCTCTGTTACTTTCATCTGTAAAGATGAAAGGGAATTTCATTGCTGGAGACTGCTCCATCTTCCATGGAATCCCTCAATTCAGTGCCACCCATTCGTCACTGCTGATCCACTCCTTCTCTATTTCCTTGCTGTGAAGCAGTCCGCTGATCTGTTTTTGCACTGCATACGCTTCGCTGAAGCTGGAACTCGATCAACCTGCTACCTCTAGGACTAGGAGTACTCCGACCATGGCCACTCCGACTAACAGCGATCACCTCCGGTTTGCCGAGCAAACTGTAAGCCTCTCTGTAACCTTTCCAGTGCGTCGATCTCCCACTCCAGCAACTGCCATATATATCTCCGATTTCTCCTAGCTTTCCTGTAGCACTGCATCCTGAGCTCCAGAGTCCATAAACGCTTGCTCATTTCCTCTCTTTCCATACGCCTGCAGCTTGATCACCGGTGCCATTGCATGAACACACGCTCTCTCTCTCTCTCTCTCAAGAGTTTGCCCAGGTGTTTGTGTGTAGAAATTCTACAGAAGACCCGGTGCTCAAAGGTTGTGCATAC]
consensusID : consensus_6147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[ATTCTGTCTATTTTTCCGGGGCAGTTCAAGCAGGAAGAGAAACGGGCTAAATTCAAGAGGAACTTACAAAAACTAGCAGGAATCAGCTTCAATTTTCGCTGCGTCTCTACTTTGAGTAATCTGTCTGCAGCTTCGGAAACTTCAAACGCGATTTGTACCAACCAACCACGCTCACCCCAGCCCAGCTCGCTTGACCGCTAACGCCGAGGAATTTGGCATACAGCGCCATCAACGAGTGGCTCGGTGCGGAGGCGTGCGGCGTCATGGTCGCCCGGTCGTCGTCACGCAGCAGCACATCCACTTCGTGTCTCCGAGGCTCGGACAGGTCGGTACTGGGCGGTAGGTCCAATGTGCCCAACTTTTCAACTGCTTTTCTACCAGCCCACTCCAATCAGACCACACTTGTTCAGGTCAATCAATGCCCCATGCAAAGACTGCCCTGAGAAATGAGACTTTTTAAGGGGGTGTTTGCGAGCTCTCAAAAACATAAGTTCTTAGGGTAAGGACACTTTTATGAGAGGGACTAAAGTTTAGTCTCTAGTTGCTAAACTTTAGCCCCTCTCTTAAAAACATAAGTCCTTAGGGTAGTGACTTATTCTTTTGTGAGAGGGACTAAAGTTTAGTTCAATTGTTCAATGCTTCCATCCATTGTTACCTTCGCAACAAAATCTAAGATCCTCCTGCGATGCTATCTTAATTTGGAAGTAGTGGTGGAATCATTGCCGCATATGTACAGTAACGATTATTTTTAAGATTTATAATCTTAAAATAAGTCTCATCCCATCCTAAATTATAATATTTTAGGA]
[+] EMBL AK108885 [ATTCTGTCTATTTTTCCGGGGCAGTTCAAGCAGGAAGAGAAACGGGCTAAATTCAAGAGGAACTTACAAAAACTAGCAGGAATCAGCTTCAATTTTCGCTGCGTCTCTACTTTGAGTAATCTGTCTGCAGCTTCGGAAACTTCAAACGCGATTTGTACCAACCAACCACGCTCACCCCAGCCCAGCTCGCTTGACCGCTAACGCCGAGGAATTTGGCATACAGCGCCATCAACGAGTGGCTCGGTGCGGAGGCGTGCGGCGTCATGGTCGCCCGGTCGTCGTCACGCAGCAGCACATCCACTTCGTGTCTCCGAGGCTCGGACAGGTCGGTACTGGGCGGTAGGTCCAATGTGCCCAACTTTTCAACTGCTTTTCTACCAGCCCACTCCAATCAGACCACACTTGTTCAGGTCAATCAATGCCCCATGCAAAGACTGCCCTGAGAAATGAGACTTTTTAAGGGGGTGTTTGCGAGCTCTCAAAAACATAAGTTCTTAGGGTAAGGACACTTTTATGAGAGGGACTAAAGTTTAGTCTCTAGTTGCTAAACTTTAGCCCCTCTCTTAAAAACATAAGTCCTTAGGGTAGTGACTTATTCTTTTGTGAGAGGGACTAAAGTTTAGTTCAATTGTTCAATGCTTCCATCCATTGTTACCTTCGCAACAAAATCTAAGATCCTCCTGCGATGCTATCTTAATTTGGAAGTAGTGGTGGAATCATTGCCGCATATGTACAGTAACGATTATTTTTAAGATTTATAATCTTAAAATAAGTCTCATCCCATCCTAAATTATAATATTTTAGGA]
consensusID : consensus_6147#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[ATCAACCTGCTACCTCTAGGACTAGGAGTACTCCGACTAACAAGCGGATCACCTCCGGTTTGCCGAGCAAACTGTAAGCCTCTCTGTAACCTTTCCAGTGCGTCGATCTCCCACTCCAGCAACTGCCATATATATCTCCGATTTCTCCTAGCTTTCCTGTAGCACTGCATCCTGAGCTCCAGAGTCCATAAACGCTTGCTCATTTCCTCTCTTTCCATACGCCTGCAGCTTGATCACCGGTGCCATTGCATGAACACACGCTCTCTCTCTCTCTCTCTCAAGAGTTTGCCCAGGTGTTTGTGTGTAGAAATTCTACAGAAGACCCGGTGCTCAA]
[-] EMBL OSC109961 [ATCAACCTGCTACCTCTAGGACTAGGAGTACTCCGACTAACAAGCGGATCACCTCCGGTTTGCCGAGCAAACTGTAAGCCTCTCTGTAACCTTTCCAGTGCGTCGATCTCCCACTCCAGCAACTGCCATATATATCTCCGATTTCTCCTAGCTTTCCTGTAGCACTGCATCCTGAGCTCCAGAGTCCATAAACGCTTGCTCATTTCCTCTCTTTCCATACGCCTGCAGCTTGATCACCGGTGCCATTGCATGAACACACGCTCTCTCTCTCTCTCTCTCAAGAGTTTGCCCAGGTGTTTGTGTGTAGAAATTCTACAGAAGACCCGGTGCTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6147#0 TTTTTTGCATGTCAATATATTAGCAAGAGAGAAAATATTGTACAACGGCGATATTCCGAA 60
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 ------------------------------------------------------------
consensus_6147#0 GTGGTCACGAGGGAGGGTTTTACACGAGGAGAAGGGAGAGTAAGGCTAAGGTAAGCTAGG 120
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 ------------------------------------------------------------
consensus_6147#0 TAAAAACAGGTCCCGAACAATAAAAATAGCTGGAAAATGAAAAAAAAGAAACGGGGACTA 180
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 ----ATTCTGTCTATTTTTCCGGGGCAGTTCAAGCAGGAAGAGAAACGGGCTAAATTCAA 56
consensus_6147#0 AAGTAACATATTAACGCTTACCTGCTAGTTTTTGTAAGTTCCTCTTGAATTTAGCCCGTT 240
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 GAGGAACTTACAAAAACTAGCAGGAATCAGCTTCAATTTTCGCTGCGTCTCTACTTTGAG 116
consensus_6147#0 TCTCTTCCTGCTTGAACTGCCCCGGAAAAATAGACAGAATCCTTCCTGGAAGATTGGAAG 300
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 TAATCTGTCTGCAGCTTCGGAAACTTCAAACGCGATTTGTACCAACCAACCACGCTCACC 176
consensus_6147#0 TAGACAGAATCAGGCGTCCTGGCCATTAGTCCATTACCTCCATACGAGAGTCTCCATGAC 360
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 CCAGCCCAGCTCGCTTGACCGCTAACGCCGAGGAATTTGGCATACAGCGCCATCAACGAG 236
consensus_6147#0 CAGTTGAGAGAGGCTCTCTGTCCAACCAATGCTCTGTTACTTTCATCTGTAAAGATGAAA 420
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 TGGCTCGGTGCGGAGGCGTGCGGCGTCATGGTCGCCCGGTCGTCGTCACGCAGCAGCACA 296
consensus_6147#0 GGGAATTTCATTGCTGGAGACTGCTCCATCTTCCATGGAATCCCTCAATTCAGTGCCACC 480
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 TCCACTTCGTGTCTCCGAGGCTCGGACAGGTCGGTACTGGGCGGTAGGTCCAATGTGCCC 356
consensus_6147#0 CATTCGTCACTGCTGATCCACTCCTTCTCTATTTCCTTGCTGGNAAGCAGTCCGCTGATC 540
consensus_6147#2 ------------------------------------------------------------
consensus_6147#1 AACTTTTCAACTGCTTTTCTACCAGCCCACTCCAATCAGACCACACTTGTTCAGGTCAAT 416
consensus_6147#0 TGTTTTTGCACTGCATACGCTTCGCTGAAGCTGGAACTCGATCAA------CCTGCTACC 594
consensus_6147#2 ----------------------------------------ATCAA------CCTGCTACC 14
consensus_6147#1 CAATGCCCCATGCAAAGACTGCCCTGAGAAATGAGACTTTTTAAGGGGGTGTTTGCGAGC 476
* * *** * *
consensus_6147#0 TCT-AGGACTAGGAGTACTCCGACCATGGCCACTCCGACTAACAGCGATCACCTCCGGTT 653
consensus_6147#2 TCT-AGGACTAGGAGTACTCCGACTA-----------ACAAGCGG--ATCACCTCCGGTT 60
consensus_6147#1 TCTCAAAAACATAAGTTCTTAGGGTAAGGACACTTTTATGAGAGGGACTAAAGTTTAGTC 536
*** * * * *** ** * * * * * * * * **
consensus_6147#0 TGCCGA-GCAAACTGTAAGCCTCTCTGT---AACC-----TTTCCAGTGCGTCGATCT-- 702
consensus_6147#2 TGCCGA-GCAAACTGTAAGCCTCTCTGT---AACC-----TTTCCAGTGCGTCGATCT-- 109
consensus_6147#1 TCTAGTTGCTAAACTTTAGCCCCTCTCTTAAAAACATAAGTCCTTAGGGTAGTGACTTAT 596
* * ** ** * **** **** * ** * * ** * ** *
consensus_6147#0 CCCACTCCAGCAACTGCCATATATATCTCCGATTTCTCCTAGCTTTCCTGTAGCACTGCA 762
consensus_6147#2 CCCACTCCAGCAACTGCCATATATATCTCCGATTTCTCCTAGCTTTCCTGTAGCACTGCA 169
consensus_6147#1 TCTTTTGTGAGAGGGACTAAAGTTTAGTTCAATTGTTCAATGCTTCCATC---CATTGTT 653
* * * * * * * * * *** ** **** * * ** **
consensus_6147#0 TCCTGAGCTCCAGAGTCCATAAACGCTTGCTCATTTCCTCTCTTTCCATACGCCTGCAGC 822
consensus_6147#2 TCCTGAGCTCCAGAGTCCATAAACGCTTGCTCATTTCCTCTCTTTCCATACGCCTGCAGC 229
consensus_6147#1 ACCTTCGCAACAAAATCTAAGATCCTCCTGCGATGCTATCTTAATTTGGAAGTA-GTGGT 712
*** ** ** * ** * * * ** *** * * * * *
consensus_6147#0 TTGATCACCGGTGCCATTGCATG--AACACACGCTCTCTCTCTCTCTC-TCTCAAGAGTT 879
consensus_6147#2 TTGATCACCGGTGCCATTGCATG--AACACACGCTCTCTCTCTCTCTC-TCTCAAGAGTT 286
consensus_6147#1 GGAATCATTGCCGCATATGTACAGTAACGATTATTTTTAAGATTTATAATCTTAAAATAA 772
**** * ** ** * *** * * * * * *** ** *
consensus_6147#0 TGCCCAGGTGTTTGTGTGTAGAAATTCTACAGAAGACCCGGTGCTCAAAGGTTGTGCATA 939
consensus_6147#2 TGCCCAGGTGTTTGTGTGTAGAAATTCTACAGAAGACCCGGTGCTCAA------------ 334
consensus_6147#1 GTCTCATCCCATCCTAAATTATAATATTTTAGGA-------------------------- 806
* ** * * * *** * ** *
consensus_6147#0 C 940
consensus_6147#2 -
consensus_6147#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||