Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6153 cluster # 6153       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6153#0 length = 1434 sequences # 4  

consensusID : consensus_6153#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1434
fasta sequence
                              [ACGCCTCCCACCAGCCACGATTCCCAGTTTCCTACCAAAAACTTGTTTCTCCTCCACGTCGGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTCCTCCACCGCCGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGTGTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGGCGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATCCTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCTGCCGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGTGGGGTACTTCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGCCGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATTCACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGATGCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGGGGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAGGTTGCCGCTGGCGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCGTACCCGTACGTCGTGGGCATCCATTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCGGCGAGCTGGGTGATGGACGACGGCGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCACTCCTTGTCACCATCGGCAACATTGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTGAGAGGGATGGCTCGCCCCGTTTCTTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGACCGCTTGTCAGTCACCGTGCTGATCACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGATGCCGGAGAAGAGGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGATGGGGATGGGTGGAGATTTCACTCGTTTTTACTCGAGGACCTTGCGTGGAGGGTGTATAATGGGCGGCTTCAGTTCAAGGACCCGCTGGTCCGGTATCGGATATAAGATTTGTCCATGGTCGTCGGCATGTTGCATAGCTTTGTTTTGTTTGTTGGTGTGTGTGTGGATTGGTTGTAATCCTAGTATTGGAGTGGTTTGAGCACGAGTGAATCATTCATCGTGTGAAAAAAATATACGAACTGAACCAGGAAATGGCT]

[+] EMBL AK105801             [ACGCCTCCCACCAGCCACGATTCCCAGTTTCCTACCAAAAACTTGTTTCTCCTCCACGTCGGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTCCTCCACCGCCGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGTGTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGGCGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATCCTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCTGCCGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGTGGGGTACTTCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGCCGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATTCACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGATGCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGGGGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAGGTTGCCGCTGGCGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCGTACCCGTACGTCGTGGGCATCCATTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCGGCGAGCTGGGTGATGGACGACGGCGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCACTCCTTGTCACCATCGGCAACATTGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTGAGAGGGATGGCTCGCCCCGTTTCTTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGACCGCTTGTCAGTCACCGTGCTGATCACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGATGCCGGAGAAGAGGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGATGGGGATGGGTGGAGATTTCACTCGTTTTTACTCGAGGACCTTGCGTGGAGGGTGTATAATGGGCGGCTTCAGTTCAAGGACCCGCTGGTCCGGTATCGGATATAAGATTTGTCCATGGTCGTCGGCATGTTGCATAGCTTTGTTTTGTTTGTTGGTGTGTGTGTGGATTGGTTGTAATCCTAGTATTGGAGTGGTTTGAGCACGAGTGAATCATTCATCGTGTGAAAAAAATATACGAACTGAACCAGGAAATGGCT]
[+] EMBL AK061475             [ACGCCTCCCACCAGCCACGATTCCCAGTTTCCTACCAAAAACTTGTTTCTCCTCCACGTCGGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTCCTCCACCGCCGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGTGTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGGCGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATCCTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCTGCCGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGTGGGGTACTTCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGCCGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATTCACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGATGCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGGGGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAGGTTGCCGCTGGCGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCGTACCCGTACGTCGTGGGCATCCATTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCGGCGAGCTGGGTGATGGACGACGGCGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCACTCCTTGTCACCATCGGCAACATTGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTGAGAGGGATGGCTCGCCCCGTTTCTTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGACCGCTTGTCAGTCACCGTGCTGATCACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGATGCCGGAGAAGAGGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGATGGGGATGGGTGGAGATTTCACTCGTTTTTACTCGAGGACCTTGCGTGGAGGGTGTATAATGGGCGGCTTCAGTTCAAGGACCCGCTGGTCCGGTATCGGATATAAGATTTGTCCATGGTCGTCGGCATGTTGCATAGCTTTGTTTTGTTTGTTGGTGTGTGTGTGGATTGGTTGTAATCCTAGTATTGGAGTGGTTTGAGCACGAGTGAATCATTCATCGTGTGAAAAAAATATACGAACTGAACCAG         ]
[+] EMBL CB667967             [           CAGCCACGATTCCCAGTTTCCTACCAAAAACTTGTTTCTCCTCCACGTCGGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTCCTCCACCGCCGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGTGTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGGCGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATCCTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCTGCCGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGTGGGGTACTTCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGCCGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATTCACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGATGCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGGGGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB667968             [                                                                                                                                                                                                                                                                                                                                                                                                                                   TCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGCCGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATTCACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGATGCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGGGGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAGGTTGCCGCTGGCGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCGTACCCGTACGTCGTGGGCATCCATTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCGGCGAGCTGGGTGATGGACGACGGCGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCACTCCTTGTCACCATCGGCAACATTGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTGAGAGGGATGGCTCGCCCCGTTTCTTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGACCGCTTGTCAGTCACCGTGCTGATCACGCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGATGCCGGAGAAGAGGGCGGCGATGAAAGGGTGGATGGAGCCGGCGATGA                                                                                                                                                                                                                                                                  ]


>consensus_6153#0 ACGCCTCCCACCAGCCACGATTCCCAGTTTCCTACCAAAAACTTGTTTCTCCTCCACGTC GGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTCCTCCACCGC CGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGTGTTCCCAGG CCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGGCGCCGCGGG TGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATCCTCTCCGGC GCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCTGCCGCCTCT CGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGTGGGGTACTT CCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGCCGAGCTCTC CCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATTCACGGAGGA GGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGTCGACGACGA GGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGATGCGGGACGT GGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGGGGAGGCGCC GTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAGGTTGCCGCTGG CGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCGTACCCGTACGTCGTGGGCATCCA TTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCGGCGAGCTGGGTGATGGACGACGG CGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCACTCCTTGTCACCATCGGCAACAT TGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTGAGAGGGATGGCTCGCCCCGTTTC TTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGACCGCTTGTCAGTCACCGTGCTGAT CACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGATGCCGGAGAAGA GGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGATGGGGATGGGTGGAGATTTCACTC GTTTTTACTCGAGGACCTTGCGTGGAGGGTGTATAATGGGCGGCTTCAGTTCAAGGACCC GCTGGTCCGGTATCGGATATAAGATTTGTCCATGGTCGTCGGCATGTTGCATAGCTTTGT TTTGTTTGTTGGTGTGTGTGTGGATTGGTTGTAATCCTAGTATTGGAGTGGTTTGAGCAC GAGTGAATCATTCATCGTGTGAAAAAAATATACGAACTGAACCAGGAAATGGCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)