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Oryza sativa
cluster # 6160 cluster # 6160       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6160#0 length = 1487 sequences # 4  

consensusID : consensus_6160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1487
fasta sequence
                              [CTCTCGCTCTCTCCACATCGGTCGTGCGGTCGTGCCGCCATCACCATCGCCCCTCCCCCTCTTCCTCCTCTCTTCTTTTTCCCTCCCTTTCGCTTCGCTTCCTCTCCTCCTCTCCACCATTGGCGACCTCGCAAACCCTAGCGCGGCGAGCGGGGGGAAGATGAGATGGGACGCAGCGGAGGCGGAGGAGGTGCTGGAGCGGATCTGGGACCTGCACGACCGCCTCAGCGACGCCATCCTCGCCGTCTCCCGCGCGCACTTCCTCCTCCCGCCGCCTCCGCCTCCTCCGCCTCCGCCGCCGTCTCAGCCGTCGGCGCCGCCCGCGCGCGAGGGGAGGAACGGGTACGTGTTCGTGAAGGGGTTGAAGGGGGGTGGAGGAGGAGGAGGAGGCGGGGTGGGGGATGGTGTGGGCGTGGGCTCGGCGAAGGCCGCGGCGGCGGAGGCGATGGCGGAGGCGAGGAGCCTGCACGCCATACGGACGGCGCTCGAGGACCTCGAGGAGCACCTCGAGTTCCTTCATACCGTTCAATCACAACAGCGGGCAGAGCAGGATGCTGCAATTGCTAGATTGGAACAGAGCCGACTAGTCCTTGCCATGAGGCTAGCTGAACATCAGGGGAAGAAGTATAGAGTCATTGATGAGGCCTTGGCGTTTGTAGGCGAAGTTGGTGACAAGAGTCGATTCATCTCACCGGAAGATGTTCGTGCAACTCATAACCAGTCAGGGGAGGATGTAATGGACAGTGGGAGCAACGGTTCAAGTATTATGGGGAATGTGTTATCTTGTAGTCTATCTTTGGCCAAGAACTCATTTCGAGTGGACAAAATCGGTAGTGCTCTGGGTAACGCTGCAGCGTTTGCTGTAAGTATGTTTGCTTTCTTGCAGCTGCATCAAGTTGCCTTTGGAAGCAAATCTCCAGCAATGGATTACAGGAGGCACAGTTACCATTCTGGGAGCTCACTACAGAGTGGCAAAGGAAAGCAACTCGAAGTGTACCTAGCCAGAGGTTGAGGAATCATCAAGTCACTTGCTGTTGCCTGTACAGAAGTTTTGACCAAATACCAGTTTTCACCGGTTTTGTTAGGGCACTAATCATTCTTTATGACGAAATGGACTATGTTTCAGGCTACTAGGATACTAATTGTTAATTCGTTTGGACGTGTTGGACTACGTTCCAATTAATAGACGTCATACCTCTAAACCTGTAAATGGATTTTTCATTAGAGATGGATGGAATGCTTGTAAGTCTGTATTCTGTCAGCCGATTGGAATTGCTGTGTTAGGTTTGTTGTGTCCTCATGAGTTATGAGGATTGAGGAGTGTTGAAAGGACAACTGTTTGTTGTGCCCTCATGAGTTATGAGGATTGAGGGGTGTTGAAGCATTCAAGGATTCAAGGTTCTTTGCTTTCCAGTTTTTTCTTTTCTTTTCTTGATTATTGACTACTTTCGACATCGGCTACCTTACAAGTACATGTGATGCTTCAT]

[+] EMBL AK072028             [CTCTCGCTCTCTCCACATCGGTCGTGCGGTCGTGCCGCCATCACCATCGCCCCTCCCCCTCTTCCTCCTCTCTTCTTTTTCCCTCCCTTTCGCTTCGCTTCCTCTCCTCCTCTCCACCATTGGCGACCTCGCAAACCCTAGCGCGGCGAGCGGGGGGAAGATGAGATGGGACGCAGCGGAGGCGGAGGAGGTGCTGGAGCGGATCTGGGACCTGCACGACCGCCTCAGCGACGCCATCCTCGCCGTCTCCCGCGCGCACTTCCTCCTCCCGCCGCCTCCGCCTCCTCCGCCTCCGCCGCCGTCTCAGCCGTCGGCGCCGCCCGCGCGCGAGGGGAGGAACGGGTACGTGTTCGTGAAGGGGTTGAAGGGGGGTGGAGGAGGAGGAGGAGGCGGGGTGGGGGATGGTGTGGGCGTGGGCTCGGCGAAGGCCGCGGCGGCGGAGGCGATGGCGGAGGCGAGGAGCCTGCACGCCATACGGACGGCGCTCGAGGACCTCGAGGAGCACCTCGAGTTCCTTCATACCGTTCAATCACAACAGCGGGCAGAGCAGGATGCTGCAATTGCTAGATTGGAACAGAGCCGACTAGTCCTTGCCATGAGGCTAGCTGAACATCAGGGGAAGAAGTATAGAGTCATTGATGAGGCCTTGGCGTTTGTAGGCGAAGTTGGTGACAAGAGTCGATTCATCTCACCGGAAGATGTTCGTGCAACTCATAACCAGTCAGGGGAGGATGTAATGGACAGTGGGAGCAACGGTTCAAGTATTATGGGGAATGTGTTATCTTGTAGTCTATCTTTGGCCAAGAACTCATTTCGAGTGGACAAAATCGGTAGTGCTCTGGGTAACGCTGCAGCGTTTGCTGTAAGTATGTTTGCTTTCTTGCAGCTGCATCAAGTTGCCTTTGGAAGCAAATCTCCAGCAATGGATTACAGGAGGCACAGTTACCATTCTGGGAGCTCACTACAGAGTGGCAAAGGAAAGCAACTCGAAGTGTACCTAGCCAGAGGTTGAGGAATCATCAAGTCACTTGCTGTTGCCTGTACAGAAGTTTTGACCAAATACCAGTTTTCACCGGTTTTGTTAGGGCACTAATCATTCTTTATGACGAAATGGACTATGTTTCAGGCTACTAGGATACTAATTGTTAATTCGTTTGGACGTGTTGGACTACGTTCCAATTAATAGACGTCATACCTCTAAACCTGTAAATGGATTTTTCATTAGAGATGGATGGAATGCTTGTAAGTCTGTATTCTGTCAGCCGATTGGAATTGCTGTGTTAGGTTTGTTGTGTCCTCATGAGTTATGAGGATTGAGGAGTGTTGAAAGGACAACTGTTTGTTGTGCCCTCATGAGTTATGAGGATTGAGGGGTGTTGAAGCATTCAAGGATTCAAGG                                                                                        ]
[+] EMBL AU069736             [                                                                                                                          GCGACCTCGCAAACCCTAGCGCGGCGAGCGGGGGGAAGATGAGATGGGACGCAGCGGAGGCGGAGGAGGTGCTGGAGCGGATCTGGGACCTGCACGACCGCCTCAGCGACGCCATCCTCGCCGTCTCCCGCGCGCACTTCCTCCTCCCGCCGCCTCCGCCTCCTCCGCCTCCGCCGCCGTCTCAGCCGTCGGCGCCGCCCGCGCGCGAAGGGAGGAACGGGTACGTGTTCGTGAAGGGGTTGAAGGNGGGTNGAGGAGGAGGAGGAGGCGGGGTGGGGGATNGTGTTGGCGTNGGCTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB096252             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATGGACAGTGGGAGCAACGGTTCAAGTATTATGGGGAATGTGTTATCTTGTAGTCTATTTTTGGCCAAGAACTCATTTCGAGTGGACAAAATCGGTAGTGCTCTGGGTAACGCTGCAGCGTTTGCTGTAAGTATGTTTGCTTTCTTGCAGCTGCATCAAGTTGCCTTTGGAAGCAAATCTCCAGCAATGGATTACAGGAGGCACAGTTACCATTCTGGGAGCTCACTACAGAGTGGCAAAGGAAAGCAACTCGAAGTGTACCTAGCCAGAGGTTGAGGAATCATCAAGTCACTTGCTGTTGCCTGTACAGAAGTTTTGACCAAATACCAGTTTTCACCGGTTTTGTTAGGGCACTAATCATTCTTTATGACGAAATGGACTATGTTTCAGGCTACTAGGATACTAATTGTTAATTCGTTTGGATGTGTTGGACTACGTTCCAATTAATAGACGTCATACC                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK059139             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGGCTACTAGGATACTAATTGTTAATTCGTTTGGACGTGTTGGACTACGTTCCAATTAATAGACGTCATACCTCTAAACCTGTAAATGGATTTTTCATTAGAGATGGATGGAATGCTTGTAAGTCTGTATTCTGTCAGCCGATTGGAATTGCTGTGTTAGGTTTGTTGTGTCCTCATGAGTTATGAGGATTGAGGAGTGTTGAAAGGACAACTGTTTGTTGTGCCCTCATGAGTTATGAGGATTGAGGGGTGTTGAAGCATTCAAGGATTCAAGGTTCTTTGCTTTCCAGTTTTTTCTTTTCTTTTCTTGATTATTGACTACTTTCGACATCGGCTACCTTACAAGTACATGTGATGCTTCAT]


>consensus_6160#0 CTCTCGCTCTCTCCACATCGGTCGTGCGGTCGTGCCGCCATCACCATCGCCCCTCCCCCT CTTCCTCCTCTCTTCTTTTTCCCTCCCTTTCGCTTCGCTTCCTCTCCTCCTCTCCACCAT TGGCGACCTCGCAAACCCTAGCGCGGCGAGCGGGGGGAAGATGAGATGGGACGCAGCGGA GGCGGAGGAGGTGCTGGAGCGGATCTGGGACCTGCACGACCGCCTCAGCGACGCCATCCT CGCCGTCTCCCGCGCGCACTTCCTCCTCCCGCCGCCTCCGCCTCCTCCGCCTCCGCCGCC GTCTCAGCCGTCGGCGCCGCCCGCGCGCGAGGGGAGGAACGGGTACGTGTTCGTGAAGGG GTTGAAGGGGGGTGGAGGAGGAGGAGGAGGCGGGGTGGGGGATGGTGTGGGCGTGGGCTC GGCGAAGGCCGCGGCGGCGGAGGCGATGGCGGAGGCGAGGAGCCTGCACGCCATACGGAC GGCGCTCGAGGACCTCGAGGAGCACCTCGAGTTCCTTCATACCGTTCAATCACAACAGCG GGCAGAGCAGGATGCTGCAATTGCTAGATTGGAACAGAGCCGACTAGTCCTTGCCATGAG GCTAGCTGAACATCAGGGGAAGAAGTATAGAGTCATTGATGAGGCCTTGGCGTTTGTAGG CGAAGTTGGTGACAAGAGTCGATTCATCTCACCGGAAGATGTTCGTGCAACTCATAACCA GTCAGGGGAGGATGTAATGGACAGTGGGAGCAACGGTTCAAGTATTATGGGGAATGTGTT ATCTTGTAGTCTATCTTTGGCCAAGAACTCATTTCGAGTGGACAAAATCGGTAGTGCTCT GGGTAACGCTGCAGCGTTTGCTGTAAGTATGTTTGCTTTCTTGCAGCTGCATCAAGTTGC CTTTGGAAGCAAATCTCCAGCAATGGATTACAGGAGGCACAGTTACCATTCTGGGAGCTC ACTACAGAGTGGCAAAGGAAAGCAACTCGAAGTGTACCTAGCCAGAGGTTGAGGAATCAT CAAGTCACTTGCTGTTGCCTGTACAGAAGTTTTGACCAAATACCAGTTTTCACCGGTTTT GTTAGGGCACTAATCATTCTTTATGACGAAATGGACTATGTTTCAGGCTACTAGGATACT AATTGTTAATTCGTTTGGACGTGTTGGACTACGTTCCAATTAATAGACGTCATACCTCTA AACCTGTAAATGGATTTTTCATTAGAGATGGATGGAATGCTTGTAAGTCTGTATTCTGTC AGCCGATTGGAATTGCTGTGTTAGGTTTGTTGTGTCCTCATGAGTTATGAGGATTGAGGA GTGTTGAAAGGACAACTGTTTGTTGTGCCCTCATGAGTTATGAGGATTGAGGGGTGTTGA AGCATTCAAGGATTCAAGGTTCTTTGCTTTCCAGTTTTTTCTTTTCTTTTCTTGATTATT GACTACTTTCGACATCGGCTACCTTACAAGTACATGTGATGCTTCAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)