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Oryza sativa
cluster # 6163 cluster # 6163       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6163#0 length = 2523 sequences # 4  

consensusID : consensus_6163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2523
fasta sequence
                              [TGTTGCTGTCACTCCCTGTGAGCCTGTGGCCAACTGAATGAAAAAAAAAAGGAAAAAAAAACAAGCCTTTTTCCCAGCAGCAGGACAGCCACTGGCGCGCACATCGATCCATCGATCACCACTTCACCACCAAGAGCCGAGCAAAAAAGCTAGCCGGAGAAGAAAACCAGGAGGCGGCGGCGGCGGCGGCCGGCGACGAGGGAGAAGCAGTCGCATGCGGCCACTCGGCGGCCATCCGGTCGCTCTCGCCGTGACAGCAGCAGCAGCAATTGCAACTCGCCGAGCTCATCCAAGACAACCCTATCCATGAGGCAACCATGCTCTTGCTCATCAACAAGTACCTGTCCAGGAGCAAGAACCCGGCAGCCGGCGACGACAAGGAGATGCCACCGCCGCCGCCGCCACCGCCGGCGAACGGAGCGGAGCGTGAGTTCATGTGCATCCCCGGCTGCGTGCCGGTGCGCGTCAAGAGGGGAACCACGACGACGACGACGACGACGACCACGGCGAGGACGTCGCGGCACAATTTCGTCAAGTCGGCGGCGTCAGGGCTGTTCCCCGGCGCGCAGTTCACCAACCACGAGTCGCTCCCGGCGATGGAGGAGGCGTACGCCGAGTTCGTCGCCGCGTTCCCGCAGTACGCCGGGCTCGCCCAGGCCGACGCCATCAGGGACGGCGAGTACCAGCACCTCGACCGCCACGTGTGCCTCGACTACACCGGCATCAACCTCTTCTCCCACGCGCAGATGAACTCGTCGGTGCCGTCGACGTCGGCCACGCCGCCGGCGTCGTCGTCGGGCGCGGCGTGGCAGCCGCCGTTCTTTGACATCGCGTACAAGTCCACGAGCCTGCGGTCGCAGGTGCAATGCGGGGACGACGTCGCGGCGGCGTCCGCGGCGGGCGGGATCGGCGGCGCCGTGACGAGGCGCGTCATGGCGTCGCTCAACATCCCCGACGACGAGTACGCCATGGTGTGCACGGCGAACCGGACCACCGCGTTCCGGCTGCTGGCGGAGTCCTACTCCTTCCAGCAGCACGGCAAGCGGCTGCTCACCGTGTACGACTACGAGAGCGAGGCGGCGGGCGCGATGGCGGAGAGCGCGCGCCGCCGCGGTGCGGAGGTGATGTCGGCGACGTTCGCGTGGCCGGGCATGCGCGTCCACGCCGCCGACCTCCGCAAGAAGCTGCTCCGCGGGAGGCGGCGCGGCGGCGGCGGCGGGCACCGGAGGGGGCTCTTCGTGTTCCCGCTGGTGTCGCGGATGACGGGGGCCAGGTACCCATACCTGTGGATGAGCGCGGCGCACGAACAAGGGTGGCACGTCGCGCTCGACGCGTGCGCGCTGGGCACCAAGGACCTCGACACGCTGGGCCTCTCCCTCCTCCGCCCGGACTTCATCGTCTGCAACTTCTTCAAGGTGTTCGGCGAGAACCCCTCCGGCTTCGCGGGCCTCTTCGTCAAGAAGTCCAGCCTCGCCGCGCTGGAGCGCTCCGTCATCGCCCGCAGCATCGGCATCGTCAGCATCGTCCCCGCACGCCGCTGGTCGCTCCACGACGGCTACTCCACCGAGCTCGACCCGGTCGCCGCGGCGGCGGACGACCTCGACACCACCAGCTCCTTCTCCGGCCCACTCAGTGGCACCCTCATCGCGCTCACACTCAAGAACGTACCGGAGATGGACGCCGCAGGCGAGGAGAACGGCCACTCGCCGGAGATCCGCGAGGCCGATCCGCCGCCACCACCACCGCCAATAATGGAGGTGGAGTGCAGGGGGCTGGACCACGCGGACGCGCTGGGGCTGATCGCCATAGGCAACCGGCTGAGGTGCATCAGCAACTGGCTGGTGGTGGCGATGCAGAAGCTGCGGCACCCGCAGTCGGAGCAGGGGAAGGCGCTGGTGCGGGTGTACGGGCCGCGGGTGAAGTTCGAGCGGGGGCCATCGCTGGCGTTCAACGTGTTCGACTGGAAGGGGGAGAAGGTGGCGCCGCCGCTGGTGCAGAAGCTCGCCGACCGCCACAACATCTCCCTCACCTGCGGCTTCCTCCGCCACATCTGCTTCTCCGACAAGTACGACGCCGACAGGGCCGCCGTCCTCGAGCACATCGACGGCGGCGGCAAGAGGAAGGACGCCGCCGGCGAGATGGGGATCTACGTGGTGAACGCGTCGCTGGGGTTCTTGACCAACTTCGACGACGCCTACAGGTTGTGGGCGTTCGTGGCCAAGTTCTTGGACGCCGATTTCGTGGAGAAGGAGCGGTGGAGGTACACCGCGCTCAACCAGAAGACGGTGGAGGTGTAGCCGACATGTCCATCCACCTTCAGCTTCCACCATTGGTACACTTCACTGTCACTGTCACTGTTCGCCATTCTTTTGGGATCAGCTCGATCGGCTGTGCAGAGCTGCTCCGTCCATTCTTTGTGTGAGAGAGGCTCGCTCCAGTGTGTTCATGATTATACTGTAAAATGTAGTCTTTGCTTCCTTAGAAAAAAATATGTGCCTATTACTTGTTCGCTAAA---AAAAAAAG]

[+] EMBL AK121240             [TGTTGCTGTCACTCCCTGTGAGCCTGTGGCCAACTGAATGAAAAAAAAAAGGAAAAAAAAACAAGCCTTTTTCCCAGCAGCAGGACAGCCACTGGCGCGCACATCGATCCATCGATCACCACTTCACCACCAAGAGCCGAGCAAAAAAGCTAGCCGGAGAAGAAAACCAGGAGGCGGCGGCGGCGGCGGCCGGCGACGAGGGAGAAGCAGTCGCATGCGGCCACTCGGCGGCCATCCGGTCGCTCTCGCCGTGACAGCAGCAGCAGCAATTGCAACTCGCCGAGCTCATCCAAGACAACCCTATCCATGAGGCAACCATGCTCTTGCTCATCAACAAGTACCTGTCCAGGAGCAAGAACCCGGCAGCCGGCGACGACAAGGAGATGCCACCGCCGCCGCCGCCACCGCCGGCGAACGGAGCGGAGCGTGAGTTCATGTGCATCCCCGGCTGCGTGCCGGTGCGCGTCAAGAGGGGAACCACGACGACGACGACGACGACGACCACGGCGAGGACGTCGCGGCACAATTTCGTCAAGTCGGCGGCGTCAGGGCTGTTCCCCGGCGCGCAGTTCACCAACCACGAGTCGCTCCCGGCGATGGAGGAGGCGTACGCCGAGTTCGTCGCCGCGTTCCCGCAGTACGCCGGGCTCGCCCAGGCCGACGCCATCAGGGACGGCGAGTACCAGCACCTCGACCGCCACGTGTGCCTCGACTACACCGGCATCAACCTCTTCTCCCACGCGCAGATGAACTCGTCGGTGCCGTCGACGTCGGCCACGCCGCCGGCGTCGTCGTCGGGCGCGGCGTGGCAGCCGCCGTTCTTTGACATCGCGTACAAGTCCACGAGCCTGCGGTCGCAGGTGCAATGCGGGGACGACGTCGCGGCGGCGTCCGCGGCGGGCGGGATCGGCGGCGCCGTGACGAGGCGCGTCATGGCGTCGCTCAACATCCCCGACGACGAGTACGCCATGGTGTGCACGGCGAACCGGACCACCGCGTTCCGGCTGCTGGCGGAGTCCTACTCCTTCCAGCAGCACGGCAAGCGGCTGCTCACCGTGTACGACTACGAGAGCGAGGCGGCGGGCGCGATGGCGGAGAGCGCGCGCCGCCGCGGTGCGGAGGTGATGTCGGCGACGTTCGCGTGGCCGGGCATGCGCGTCCACGCCGCCGACCTCCGCAAGAAGCTGCTCCGCGGGAGGCGGCGCGGCGGCGGCGGCGGGCACCGGAGGGGGCTCTTCGTGTTCCCGCTGGTGTCGCGGATGACGGGGGCCAGGTACCCATACCTGTGGATGAGCGCGGCGCACGAACAAGGGTGGCACGTCGCGCTCGACGCGTGCGCGCTGGGCACCAAGGACCTCGACACGCTGGGCCTCTCCCTCCTCCGCCCGGACTTCATCGTCTGCAACTTCTTCAAGGTGTTCGGCGAGAACCCCTCCGGCTTCGCGGGCCTCTTCGTCAAGAAGTCCAGCCTCGCCGCGCTGGAGCGCTCCGTCATCGCCCGCAGCATCGGCATCGTCAGCATCGTCCCCGCACGCCGCTGGTCGCTCCACGACGGCTACTCCACCGAGCTCGACCCGGTCGCCGCGGCGGCGGACGACCTCGACACCACCAGCTCCTTCTCCGGCCCACTCAGTGGCACCCTCATCGCGCTCACACTCAAGAACGTACCGGAGATGGACGCCGCAGGCGAGGAGAACGGCCACTCGCCGGAGATCCGCGAGGCCGATCCGCCGCCACCACCACCGCCAATAATGGAGGTGGAGTGCAGGGGGCTGGACCACGCGGACGCGCTGGGGCTGATCGCCATAGGCAACCGGCTGAGGTGCATCAGCAACTGGCTGGTGGTGGCGATGCAGAAGCTGCGGCACCCGCAGTCGGAGCAGGGGAAGGCGCTGGTGCGGGTGTACGGGCCGCGGGTGAAGTTCGAGCGGGGGCCATCGCTGGCGTTCAACGTGTTCGACTGGAAGGGGGAGAAGGTGGCGCCGCCGCTGGTGCAGAAGCTCGCCGACCGCCACAACATCTCCCTCACCTGCGGCTTCCTCCGCCACATCTGCTTCTCCGACAAGTACGACGCCGACAGGGCCGCCGTCCTCGAGCACATCGACGGCGGCGGCAAGAGGAAGGACGCCGCCGGCGAGATGGGGATCTACGTGGTGAACGCGTCGCTGGGGTTCTTGACCAACTTCGACGACGCCTACAGGTTGTGGGCGTTCGTGGCCAAGTTCTTGGACGCCGATTTCGTGGAGAAGGAGCGGTGGAGGTACACCGCGCTCAACCAGAAGACGGTGGAGGTGTAGCCGACATGTCCATCCACCTTCAGCTTCCACCATTGGTACACTTCACTGTCACTGTCACTGTTCGCCATTCTTTTGGGATCAGCTCGATCGGCTGTGCAGAGCTGCTCCGTCCATTCTTTGTGTGAGAGAGGCTCGCTCCAGTGTGTTCATGATTATACTGTAAAATGTAGTCTTTGCTTCCTTAGAAAAAAATATGTGCCTATTACTTGTT                  ]
[+] EMBL CB676627             [                                                                                                                                                AAAAGCTAGCCGGAGAAGAAAACCAGGAGGCGGCGGCGGCGGCGGCCGGCGACGAGGGAGAAGCAGTCGCATGCGGCCACTCGGCGGCCATCCGGTCGCTCTCGCCGTGACAGCAGCAGCAGCAATTGCAACTCGCCGAGCTCATCCAAGACAACCCTATCCATGAGGCAACCATGCTCTTGCTCATCAACAAGTACCTGTCCAGGAGCAAGAACCCGGCAGCCGGCGACGACAAGGAGATGCCACCGCCGCCGCCGCCACCGCCGGCGAACGGAGCGGAGCGTGAGTTCATGTGCATCCCCGGCTGCGTGCCGGTGCGCGTCAAGAGGGGAACCACGACGACGACGACGACGACGACCACGGCGAGGACGTCGCGGCACAATTTCGTCAAGTCGGCGGCGTCAGGGCTGTTCCCCGGCGCGCAGTTCACCAACCACGAGTCGCTCCCGGCGATGGAGGAGGCGTACGCCGAGTTCGTCGCCGCGTTCCCGCAGTACGCCGGGCTCGCCCAGGCCGACGCCATCAGGGACGGCGAGTACCAGCACCTCGACCGCCACGTGTGCCTCGACTACACCGGCATCAACCTCTTCTCCCACGCGCAGATGAACTCGTCGGTGCCGTCGACGTCGGCCACGCCGCCGGCGTCGTCGTCGGGCGCGGCGTGGCAGCCGCCGTTCTTTGACATCGCGTACAAGTCCACGAGCCTGCGGTCGCAGGTGCAATGCGGGGACGACGTCGCGGCGGCGTCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB676628             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCGCCAATAATGGAGGTGGAGTGCAGGGGGCTGGACCACGCGGACGCGCTGGGGCTGATCGCCATAGGCAACCGGCTGAGGTGCATCAGCAACTGGCTGGTGGTGGCGATGCAGAAGCTGCGGCACCCGCAGTCGGAGCAGGGGAAGGCGCTGGTGCGGGTGTACGGGCCGCGGGTGAAGTTCGAGCGGGGGCCATCGCTGGCGTTCAACGTGTTCGACTGGAAGGGGGAGAAGGTGGCGCCGCCGCTGGTGCAGAAGCTCGCCGACCGCCACAACATCTCCCTCACCTGCGGCTTCCTCCGCCACATCTGCTTCTCCGACAAGTACGACGCCGACAGGGCCGCCGTCCTCGAGCACATCGACGGCGGCGGCAAGAGGAAGGACGCCGCCGGCGAGATGGGGATCTACGTGGTGAACGCGTCGCTGGGGTTCTTGACCAACTTCGACGACGCCTACAGGTTGTGGGCGTTCGTGGCCAAGTTCTTGGACGCCGATTTCGTGGAGAAGGAGCGGTGGAGGTACACCGCGCTCAACCAGAAGACGGTGGAGGTGTAGCCGACATGTCCATCCACCTTCAGCTTCCACCATTGGTACACTTCACTGTCACTGTCACTGTTCGCCATTCTTTTGGGATCAGCTCGATCGGCTGTGCAGAGCTGCTCCGTCCATTCTTTGTGTGAGAGAGGCTCGCTCCAGTGTGTTCATGATTATACTGTAAAATGTAGTCTTTGCTTCCTTAGAAAAAAATATGTGCCTATTACTTGTTCGCTAAA   AAAAAAAG]
[-] EMBL AU165082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CATTGGTACACTTCACTGTCACTGTCACTGTTCGCCATTCTTTTGGGATCAGCTCGATCGGCTGTGCAGAGCTGCTCCGTCCATTCTTTGTGTGAGAGAGGCTCGCTCCAGTGTGTTCATGATTATACTGTAAAATGTAGTCTTTGCTTCCTTGGAAAAAAATATGTGCCTATTACTTGTTCGCTATACTGAAAAAA  ]


>consensus_6163#0 TGTTGCTGTCACTCCCTGTGAGCCTGTGGCCAACTGAATGAAAAAAAAAAGGAAAAAAAA ACAAGCCTTTTTCCCAGCAGCAGGACAGCCACTGGCGCGCACATCGATCCATCGATCACC ACTTCACCACCAAGAGCCGAGCAAAAAAGCTAGCCGGAGAAGAAAACCAGGAGGCGGCGG CGGCGGCGGCCGGCGACGAGGGAGAAGCAGTCGCATGCGGCCACTCGGCGGCCATCCGGT CGCTCTCGCCGTGACAGCAGCAGCAGCAATTGCAACTCGCCGAGCTCATCCAAGACAACC CTATCCATGAGGCAACCATGCTCTTGCTCATCAACAAGTACCTGTCCAGGAGCAAGAACC CGGCAGCCGGCGACGACAAGGAGATGCCACCGCCGCCGCCGCCACCGCCGGCGAACGGAG CGGAGCGTGAGTTCATGTGCATCCCCGGCTGCGTGCCGGTGCGCGTCAAGAGGGGAACCA CGACGACGACGACGACGACGACCACGGCGAGGACGTCGCGGCACAATTTCGTCAAGTCGG CGGCGTCAGGGCTGTTCCCCGGCGCGCAGTTCACCAACCACGAGTCGCTCCCGGCGATGG AGGAGGCGTACGCCGAGTTCGTCGCCGCGTTCCCGCAGTACGCCGGGCTCGCCCAGGCCG ACGCCATCAGGGACGGCGAGTACCAGCACCTCGACCGCCACGTGTGCCTCGACTACACCG GCATCAACCTCTTCTCCCACGCGCAGATGAACTCGTCGGTGCCGTCGACGTCGGCCACGC CGCCGGCGTCGTCGTCGGGCGCGGCGTGGCAGCCGCCGTTCTTTGACATCGCGTACAAGT CCACGAGCCTGCGGTCGCAGGTGCAATGCGGGGACGACGTCGCGGCGGCGTCCGCGGCGG GCGGGATCGGCGGCGCCGTGACGAGGCGCGTCATGGCGTCGCTCAACATCCCCGACGACG AGTACGCCATGGTGTGCACGGCGAACCGGACCACCGCGTTCCGGCTGCTGGCGGAGTCCT ACTCCTTCCAGCAGCACGGCAAGCGGCTGCTCACCGTGTACGACTACGAGAGCGAGGCGG CGGGCGCGATGGCGGAGAGCGCGCGCCGCCGCGGTGCGGAGGTGATGTCGGCGACGTTCG CGTGGCCGGGCATGCGCGTCCACGCCGCCGACCTCCGCAAGAAGCTGCTCCGCGGGAGGC GGCGCGGCGGCGGCGGCGGGCACCGGAGGGGGCTCTTCGTGTTCCCGCTGGTGTCGCGGA TGACGGGGGCCAGGTACCCATACCTGTGGATGAGCGCGGCGCACGAACAAGGGTGGCACG TCGCGCTCGACGCGTGCGCGCTGGGCACCAAGGACCTCGACACGCTGGGCCTCTCCCTCC TCCGCCCGGACTTCATCGTCTGCAACTTCTTCAAGGTGTTCGGCGAGAACCCCTCCGGCT TCGCGGGCCTCTTCGTCAAGAAGTCCAGCCTCGCCGCGCTGGAGCGCTCCGTCATCGCCC GCAGCATCGGCATCGTCAGCATCGTCCCCGCACGCCGCTGGTCGCTCCACGACGGCTACT CCACCGAGCTCGACCCGGTCGCCGCGGCGGCGGACGACCTCGACACCACCAGCTCCTTCT CCGGCCCACTCAGTGGCACCCTCATCGCGCTCACACTCAAGAACGTACCGGAGATGGACG CCGCAGGCGAGGAGAACGGCCACTCGCCGGAGATCCGCGAGGCCGATCCGCCGCCACCAC CACCGCCAATAATGGAGGTGGAGTGCAGGGGGCTGGACCACGCGGACGCGCTGGGGCTGA TCGCCATAGGCAACCGGCTGAGGTGCATCAGCAACTGGCTGGTGGTGGCGATGCAGAAGC TGCGGCACCCGCAGTCGGAGCAGGGGAAGGCGCTGGTGCGGGTGTACGGGCCGCGGGTGA AGTTCGAGCGGGGGCCATCGCTGGCGTTCAACGTGTTCGACTGGAAGGGGGAGAAGGTGG CGCCGCCGCTGGTGCAGAAGCTCGCCGACCGCCACAACATCTCCCTCACCTGCGGCTTCC TCCGCCACATCTGCTTCTCCGACAAGTACGACGCCGACAGGGCCGCCGTCCTCGAGCACA TCGACGGCGGCGGCAAGAGGAAGGACGCCGCCGGCGAGATGGGGATCTACGTGGTGAACG CGTCGCTGGGGTTCTTGACCAACTTCGACGACGCCTACAGGTTGTGGGCGTTCGTGGCCA AGTTCTTGGACGCCGATTTCGTGGAGAAGGAGCGGTGGAGGTACACCGCGCTCAACCAGA AGACGGTGGAGGTGTAGCCGACATGTCCATCCACCTTCAGCTTCCACCATTGGTACACTT CACTGTCACTGTCACTGTTCGCCATTCTTTTGGGATCAGCTCGATCGGCTGTGCAGAGCT GCTCCGTCCATTCTTTGTGTGAGAGAGGCTCGCTCCAGTGTGTTCATGATTATACTGTAA AATGTAGTCTTTGCTTCCTTAGAAAAAAATATGTGCCTATTACTTGTTCGCTAAAAAAAA AAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)