These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2246 fasta sequence [CTGGCACAGCTAATCCAAATCCTCCTCTTTTTCTTGTTTTTTTTTTTCTTTCTTCGTCTTCTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGAAATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCGGCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGTGCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATCTGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTGGGAGGCGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGAGCACCGGCTCCAGGGCAAGACAGAAGCTGGTGGGCCAGATGGGTTAAGGAAATGCAAATCTGATTCTAAAGCTACAGCAAGTGTCCTTGCCCCTCCAAAAGATGTGGAGGACCTGCAAATCGAAGGATACGGAAATGTTAATATTTTCACATATAATGAACTAAGAGCAGCCACAAAAAACTTCCGGCCTGACCAAATTCTTGGAGAGGGTGGGTTTGGTGTTGTTTACAAAGGTGTAATTGATGAAAATGTTAGAGCGGGCTTTCCATCCACACAAGTTGCTGTGAAAGAATTAAACCCAGAGGGATTTCAGGGTGACAAGGAATGGTTGGCAGAAGTCAACTACCTTGGGCAACTTAGCCATCCAAATCTAGTCGAACTGATTGGGTATTGCTGTGAAGGCTCTCATAGACTGCTTGTTTACGAGTACATGGCTTGCGGCAGCCTTGAAAAGCATCTTTTTCGCCGGGTTTGCCTTAATATGCCATGGTCTACTCGAATGAAGATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAGATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGGATTATAATGCCAAGCTGTCAGACTTTGGCCTAGCACGAACTGGACCTAGTGGAGACCAAACCCATGTATCAACTCGGGTCATGGGTACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGGTGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATG-CCAAGACATACTC-TTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTG-CAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACAACCAGCAGCAAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAGAACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACATCCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAGAGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAGAAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCATCTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAGAACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGTTGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTTGAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAATCGATGTGTCAGTGTTGTTGTTGCTCGAGTGTTTTTGACTTTTCTGTATAGATGATGATGTCCTTGCAAACTTGGTACAGTTCTACAGGAAATCAACAAGAAGATGGAAAAATATAAGATGAATCAGTGTCCGTTTGTTGACAGTTTGTTTTTGGAGTATGGTTTTGT] [+] EMBL AK100479 [CTGGCACAGCTAATCCAAATCCTCCTCTTTTTCTTGTTTTTTTTTTTCTTTCTTCGTCTTCTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGAAATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCGGCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGTGCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATCTGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTGGGAGGCGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGAGCACCGGCTCCAGGGCAAGACAGAAGCTGGTGGGCCAGATGGGTTAAGGAAATGCAAATCTGATTCTAAAGCTACAGCAAGTGTCCTTGCCCCTCCAAAAGATGTGGAGGACCTGCAAATCGAAGGATACGGAAATGTTAATATTTTCACATATAATGAACTAAGAGCAGCCACAAAAAACTTCCGGCCTGACCAAATTCTTGGAGAGGGTGGGTTTGGTGTTGTTTACAAAGGTGTAATTGATGAAAATGTTAGAGCGGGCTTTCCATCCACACAAGTTGCTGTGAAAGAATTAAACCCAGAGGGATTTCAGGGTGACAAGGAATGGTTGGCAGAAGTCAACTACCTTGGGCAACTTAGCCATCCAAATCTAGTCGAACTGATTGGGTATTGCTGTGAAGGCTCTCATAGACTGCTTGTTTACGAGTACATGGCTTGCGGCAGCCTTGAAAAGCATCTTTTTCGCCGGGTTTGCCTTAATATGCCATGGTCTACTCGAATGAAGATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAGATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGGATTATAATGCCAAGCTGTCAGACTTTGGCCTAGCACGAACTGGACCTAGTGGAGACCAAACCCATGTATCAACTCGGGTCATGGGTACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGGTGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATG CCAAGACATACTC TTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTG CAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACAACCAGCAGCAAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAGAACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACATCCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAGAGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAGAAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCATCTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAGAACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGTTGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTTGAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAATCGATGTGTCAGTGTTGTTGTTGCTCGAGTGTTTTTGACTTTTCTGTATAGATGATGATGTCCTTGCAAACTTGGTACAGTTCTACAGGAAATCAACAAGAAGATGGAAAAATATAAGATGAATCAGTGTCCGTTTGTTGACAGTTTGTTTTTGGAGTATGGTTTTGT] [+] EMBL AU085863 [ AATCCTCCTCTTTTTCTTG TTTTTTTTTTCTTTCTTCGTCTTCTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGAAATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCGGCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGTGCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATCTGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTNGGAAGCGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGA ] [+] EMBL C98701 [ CATGCTTGAATGCCCAAGACATACTCTTTGCAGAACTGCATGACGGTTGCAGTGACACTCTACGAGGTTGCCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAANCAAGAACAACCAGCAGCAAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAGAACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACATCCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAGAGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAGAAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCATCTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAGAACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGTTGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTTGAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAAaaa ] consensusID : consensus_6170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGATGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACANNNNNGCAGCAAAACGNTNNNCGTGGCNNNNNNNNCNGT] [+] EMBL CF196424 [CTATGCAGCTCCTGAATATGTCATGACAGGCCATCTGACAGCACGAAGTGATGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAGGAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCCCCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTACTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCCCAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCCTGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGTTGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACANNNNNGCAGCAAAACGNTNNNCGTGGCNNNNNNNNCNGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6170#0 CTGGCACAGCTAATCCAAATCCTCCTCTTTTTCTTGTTTTTTTTTTTCTTTCTTCGTCTT 60 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CTCCAACGCCCAAAGTAAAACAAAGGAAAAAAGAAAAGCCGCATCCAAGAACGCACCAGA 120 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AATTTCGGCGACGGTTGCGCGCGAATCCATCCATCCACCGGCGGTCGGAGGGCGGCGGCG 180 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 GCGGAGCAATTCCGCCCAACCAAGCGGCGGAGTCGGTGCGGGCGAAATTTCCGGGTTGGT 240 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 GCGCGGGGCTTGGGTTGGTGGTGGTGGACTGGTGGTGGTGTGTGTTCTTGGGAGTGGATC 300 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TGGCAGGAGGCTGGCGATGGGGAGGCGGGAGTAGGGGGAGCGGCGGATTGGAGTGGGAGG 360 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CGCGGTGTTGGGGGCTCCCATGGGCGGATGCTTCTCGCTGGAGGAGCACCGGCTCCAGGG 420 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CAAGACAGAAGCTGGTGGGCCAGATGGGTTAAGGAAATGCAAATCTGATTCTAAAGCTAC 480 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AGCAAGTGTCCTTGCCCCTCCAAAAGATGTGGAGGACCTGCAAATCGAAGGATACGGAAA 540 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TGTTAATATTTTCACATATAATGAACTAAGAGCAGCCACAAAAAACTTCCGGCCTGACCA 600 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AATTCTTGGAGAGGGTGGGTTTGGTGTTGTTTACAAAGGTGTAATTGATGAAAATGTTAG 660 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AGCGGGCTTTCCATCCACACAAGTTGCTGTGAAAGAATTAAACCCAGAGGGATTTCAGGG 720 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TGACAAGGAATGGTTGGCAGAAGTCAACTACCTTGGGCAACTTAGCCATCCAAATCTAGT 780 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CGAACTGATTGGGTATTGCTGTGAAGGCTCTCATAGACTGCTTGTTTACGAGTACATGGC 840 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TTGCGGCAGCCTTGAAAAGCATCTTTTTCGCCGGGTTTGCCTTAATATGCCATGGTCTAC 900 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TCGAATGAAGATTGCTCTAGGTGCTGCAAGGGGGCTGGAATATCTTCACGGAGCTGAGAG 960 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 ATCAATTATATATCGAGATTTCAAAACATCAAACATCTTGTTAGATGCGGATTATAATGC 1020 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CAAGCTGTCAGACTTTGGCCTAGCACGAACTGGACCTAGTGGAGACCAAACCCATGTATC 1080 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AACTCGGGTCATGGGTACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGCCATCT 1140 consensus_6170#1 ------------------------CTATGCAGCTCCTGAATATGTCATGACAGGCCATCT 36 ************************************ consensus_6170#0 GACAGCACGAAGTGGTGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAG 1200 consensus_6170#1 GACAGCACGAAGTGATGTCTATGGCTTTGGTGTCGTCCTTCTCGAGATGATCATAGGCAG 96 ************** ********************************************* consensus_6170#0 GAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCC 1260 consensus_6170#1 GAGGGCTGTGGACAAGAGCCGGCCTAGCCGTGAGCACAACCTAGTTGAGTGGGCACGTCC 156 ************************************************************ consensus_6170#0 CCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTA 1320 consensus_6170#1 CCTCCTCGTGCACAATCGGAAGCTGTTCAGGATTATCGATCCAAGAATGGAAGGGCAGTA 216 ************************************************************ consensus_6170#0 CTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCC 1380 consensus_6170#1 CTCCACCAAGGCTGCCATTGAGGTGGCAGGCCTTGCGTACCGATGCTTGAGCCAGAATCC 276 ************************************************************ consensus_6170#0 CAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCC 1440 consensus_6170#1 CAAAGGACGACCCACCATGAGCCAGGTTGTTGAGACCTTTGAGGCTGTGCAAAACATGCC 336 ************************************************************ consensus_6170#0 TGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGT 1500 consensus_6170#1 TGAATGCCAAGACATACTCTTGCAGAACTGCATGACGGGTGCAGTGACACTCTACGAGGT 396 ************************************************************ consensus_6170#0 TGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACAACCAGCAGC 1560 consensus_6170#1 TGCAAAGGACCCTACGGAGAGCGTCGAGCCGGAGAAGATAAAACAAGAACANNNNNGCAG 456 *************************************************** consensus_6170#0 AAAAACGGTCACCGTGGCACCGGCACCGGTAAATGGAAAACCCGTGCCTCAGAGCAGGAG 1620 consensus_6170#1 CAAAACGNTNNNCGTGGCNNNNNNNNCNGT------------------------------ 486 ****** * ****** * ** consensus_6170#0 AACACGGCCAGGGAATGGCCGGAGCAAGAGCGAGCCGTCTTTGGAATGCAAGCTGTACAT 1680 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CCCATCTCCAGACTCTGATGGCCAGCAGCCAGGCCTGGAGGCATTGTCATCCCCTTCCAG 1740 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AGATGGAAGCATAAAGGATCCACCGGACGAGGATTTGTACAAGATATAAAAGTCACACAG 1800 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AAGTTTTTTATGACGATTCAAGTTTTCGCTACCGGCGATTTCGCATTGCCATCCATCCAT 1860 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CTTGTTGTCAAGATCGATCAGAGTCAAAGTTGGTGTTAAAATTTTTTCTGATGGCGGAAG 1920 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AACTCTACCTCGTTAGGTTTCTTGCTGTTCCGACTAGCAATTGTATGTAGAGAGGAGCGT 1980 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 TGTGGAAAGCATTTGTAATGTGAGATGCCTGCCGCGACGAAAAGTTCGTGTTGTAAACTT 2040 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 GAAACCATTCTCTGGGAAGAGGAAGATCCACATCATAATCGATGTGTCAGTGTTGTTGTT 2100 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 GCTCGAGTGTTTTTGACTTTTCTGTATAGATGATGATGTCCTTGCAAACTTGGTACAGTT 2160 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 CTACAGGAAATCAACAAGAAGATGGAAAAATATAAGATGAATCAGTGTCCGTTTGTTGAC 2220 consensus_6170#1 ------------------------------------------------------------ consensus_6170#0 AGTTTGTTTTTGGAGTATGGTTTTGT 2246 consensus_6170#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||