These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2096 fasta sequence [AACTAGTAAACCCCCCTGTCCAACTGCTCCACCTCCCACTTCCACCAGTCCACCACCCTGCGGCATACGGCGCGTCACGAGCATCGGCGGCGGAAGCGTCGCCGTCGTTGTTGCCTTGCCTCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGCCTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGGAGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGACGCTCAAGAGAAAGAACCAGAAGGCGCTA-TTCGAGGCTCTCCTCAAGGTGAAAGAAGAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGATTCTTCAGAAGACATGCGTTCCTCCCAAGTGGACCAACTACTTGCTTCCATGTCGAAAGATGGAGGACCAGTCCAAACAACGCGGCCCGTCAGAAGCTCATTTCGTTGCTGCCGGAGTTCTTGGCCACCTCGGTCGGCGGCTGCTTGCCGATGGTGGAACAGGGGCCGACCATTGCCAGAACAAGGGAAAGGTTCCTTTGCTGTCACTTGAAGCACTCCATCAGTTGCATATTTTCATTTTTGTTCTGGCCATCACACATGTGATTTTCAGTGCTCTGACTATGCTTCTTGGAGGAGCGAAGATTCATCAATGGAAACACTGGGAAAATGACATCCAGAAAGATGTTGCTCAAAATGCGCCCAAGAAGGTGACCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTATTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGTCAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTGCGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGAAAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATGTTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCGTTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACTCTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGCCGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGTTCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTTTTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGAAGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTTCCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTGACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACTGACCGTCGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTTAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGA] [+] EMBL AK121374 [AACTAGTAAACCCCCCTGTCCAACTGCTCCACCTCCCACTTCCACCAGTCCACCACCCTGCGGCATACGGCGCGTCACGAGCATCGGCGGCGGAAGCGTCGCCGTCGTTGTTGCCTTGCCTCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGCCTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGGAGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCCATTACCTCGGCAAGACGCTCAAGAGAAAGAACCAGAAGGCGCTA TTCGAGGCTCTCCTCAAGGTGAAAGAAGAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAGGGATTCTTCAGAAGACATGCGTTCCTCCCAAGTGGACCAACTACTTGCTTCCATGTCGAAAGATGGAGGACCAGTCCAAACAACGCGGCCCGTCAGAAGCTCATTTCGTTGCTGCCGGAGTTCTTGGCCACCTCGGTCGGCGGCTGCTTGCCGATGGTGGAACAGGGGCCGACCATTGCCAGAACAAGGGAAAGGTTCCTTTGCTGTCACTTGAAGCACTCCATCAGTTGCATATTTTCATTTTTGTTCTGGCCATCACACATGTGATTTTCAGTGCTCTGACTATGCTTCTTGGAGGAGCGAAGATTCATCAATGGAAACACTGGGAAAATGACATCCAGAAAGATGTTGCTCAAAATGCGCCCAAGAAGGTGACCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTATTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGTCAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTGCGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGAAAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATGTTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCGTTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACTCTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGCCGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGTTCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTTTTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGAAGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTTCCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTGACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACTGACCGTCGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTTAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGA] [+] EMBL AU163639 [ CACCCTGCGGCATACGGCGCGTCACGAGCATCGGCGGCGGAANCGTCGCCGTCGTTGTTGCCTTGCCTCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGCCTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGGAGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGATCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGA GTGCCTCCATTACCTCGGCAAGACG TCAAGAGAAAGAACCAGAANGCG TATTTCGA GNTCTCCTCAAGGTtg ] [+] EMBL AK072733 [ CCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTATTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGTCAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTGCGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGAAAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATGTTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCGTTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACTCTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGCCGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGTTCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTTTTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCTTGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACGAGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGAAGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTTCCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTGACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACTGACCGTCGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGA ] consensusID : consensus_6175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [CCCCATGCCGTTANATCCCCCTTATCCNTTATGCCCCGGAACCNTTGTGTTGTGGCCCTACTTGNCCGTCGAAGAATGCCNTGTCCCCGTGCACCCCNGAACTGCGATCANCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTCAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGAACTTTGCTTCAAAAA] [+] EMBL C98942 [CCCCATGCCGTTANATCCCCCTTATCCNTTATGCCCCGGAACCNTTGTGTTGTGGCCCTACTTGNCCGTCGAAGAATGCCNTGTCCCCGTGCACCCCNGAACTGCGATCANCTGTGCTGTCAGCTATGTTTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCAAGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGATAGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTCAGAATTTACCTACCGAGAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGAACTTTGCTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6175#0 AACTAGTAAACCCCCCTGTCCAACTGCTCCACCTCCCACTTCCACCAGTCCACCACCCTG 60 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CGGCATACGGCGCGTCACGAGCATCGGCGGCGGAAGCGTCGCCGTCGTTGTTGCCTTGCC 120 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TCGCGACGCCGCTCCCGTCCCTCTCACTCTCCCGTGGACCGTGCGCGCTCTAGCTCGTGC 180 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CTTCTTGCGGAGTTTGCAGTGCGCGCGTTTCGTTTGCCCGCAACAGCAAGGCGAGGGGGG 240 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AGAGAGCAAGGATGGCGAGGGCGGAGGCGGCGGCGGCGCTGGAGTTCACGCCGACGTGGA 300 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TCGTCGCGGCGATCTGCTCCCTCATCGTGCTCATCTCCCTCGCCGCCGAGAGGTGCCTCC 360 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 ATTACCTCGGCAAGACGCTCAAGAGAAAGAACCAGAAGGCGCTATTCGAGGCTCTCCTCA 420 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AGGTGAAAGAAGAGCTGATGCTTCTGGGGTTCATCTCCCTGCTGCTGACGGTGTCCCAAG 480 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 GGATTCTTCAGAAGACATGCGTTCCTCCCAAGTGGACCAACTACTTGCTTCCATGTCGAA 540 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AGATGGAGGACCAGTCCAAACAACGCGGCCCGTCAGAAGCTCATTTCGTTGCTGCCGGAG 600 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TTCTTGGCCACCTCGGTCGGCGGCTGCTTGCCGATGGTGGAACAGGGGCCGACCATTGCC 660 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AGAACAAGGGAAAGGTTCCTTTGCTGTCACTTGAAGCACTCCATCAGTTGCATATTTTCA 720 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TTTTTGTTCTGGCCATCACACATGTGATTTTCAGTGCTCTGACTATGCTTCTTGGAGGAG 780 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CGAAGATTCATCAATGGAAACACTGGGAAAATGACATCCAGAAAGATGTTGCTCAAAATG 840 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CGCCCAAGAAGGTGACCCATGTGCATCAATTTGAATTTATCAGGGAACGCTTTAAGGGTA 900 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TTGGCAAAGATTCCATAATACTAAGCTGGCTGCATTCTTTTGTTAAGCAGTTTTCTGGGT 960 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CAGTTACTAAATCAGACTACATAACAATGCGACTTGGATTTATCCAGACACATTGCCGTG 1020 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CGAACCCAAAGTTCGATTTCCACAGATACATGGTACGAGCTTTGGAAGCAGATTTTAAGA 1080 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AAGTGGTTGGTATAAGCTGGTACTTGTGGATATTCGTTATGATATTCCTGCTGCTGAATG 1140 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TTAATGGTTGGCACACATACTTTTGGATCTCCTTCGTTCCCCTTCTACTTTTGCTGGCCG 1200 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TTGGCACCAAGCTAGAACATGTCATAACCCAACTAGCCCATGAGGTTGCCGAGAAGCACT 1260 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CTGCAATTGAGGGCGACTTGGTTGTGAATCCATCAGACGAGCACTTTTGGTTTGGACGGC 1320 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CGAAGGTGATCCTATACCTGATCCATTTTATCCTCTTCCAAAACGCGTTCGAGATCGCGT 1380 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TCTTCTTCTGGATTCTGACCACCTACGGTTTCAACTCCTGCATCATGGACCACGTCCCTT 1440 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TTATCCTGACAAGGCTTATCATCGGGGCCATCGTTCAAATCCTCTGCAGCTACAGTACCT 1500 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 TGCCTATATATGCAATTGTCACACAGATGGGCTCCTTTTTCAAGAAGGAGATCTTCGACG 1560 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AGCATGTGCAGCAGGGCCTTGTTGGTTGGGCGCAGAAGGCCAAGAAGAGGAAAGGGTTGA 1620 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 AGGAGAGCAACGGCGCCATGGCTGGAGCTGGATCAACAAATGGGTCATCACAGCCATCTT 1680 consensus_6175#1 ------------------------------------------------------------ consensus_6175#0 CCATTCTACAAATGGTGAGGCGAGCCGCCGCTAGCGAGGAAGGCAGCAGCAATGGCGGTG 1740 consensus_6175#1 -----------------------------------------------CCCCATG-CCGTT 12 * *** * ** consensus_6175#0 ACATGCGCACTAATCAGTAGTGGCCCGGAAGCAGTGTGTGTTTGTGACCTACT-GACCGT 1799 consensus_6175#1 ANAT-CCCCCTTATCCNTTATGCCCCGGAACCNTTGTGTTGTGGC--CCTACTTGNCCGT 69 * ** * * ** *** * ** ******* * ***** * * ****** * **** consensus_6175#0 CGAGAAATGCAGTGTTGCCGTGCACCCAGAAACTGCGATCAGCTGTGCTGTCAGCTATGT 1859 consensus_6175#1 CGAAGAATGCCNTGTCCCCGTGCACCCCNGAACTGCGATCANCTGTGCTGTCAGCTATGT 129 *** ***** *** ********** *********** ****************** consensus_6175#0 TTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCA 1919 consensus_6175#1 TTTGTTTGTTCTATTGTACTACTGTACTCTAGCAGACAGTAGTTTGCATGGCAATAGTCA 189 ************************************************************ consensus_6175#0 AGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGAT 1979 consensus_6175#1 AGAGGAGAGTTGTATGATACTACTACTAGTAGCTAGTAGAAGATGGCGATACAGTGTGAT 249 ************************************************************ consensus_6175#0 AGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTTAGAATTTACCTACCGA 2039 consensus_6175#1 AGGATGCTTGCTACCTTTGATCGACACACATGTTGTCGAGTTTCAGAATTTACCTACCGA 309 ******************************************* **************** consensus_6175#0 GAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGA--- 2096 consensus_6175#1 GAAGGTAGTGACTGGAGAAGCAGCTTGTAGTAAGCAGAACAGGCACAAAAAAACTGAACT 369 ********************************************************* consensus_6175#0 ------------ consensus_6175#1 TTGCTTCAAAAA 381 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||