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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1056 fasta sequence
[ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGG-GAAGGCGAGCGGCGGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAA-GGNAAGTTTGAGAAGGAAAGGC-AAATTATCT-TAAGTTCTATCAAAG-CTTCAAAAGAGTGTGAAGG-TTACTTGAGGACGAGTACACCAAGTTTCAAGC-ACACATGAT-AATTNTGC-AAG-AAAAGTTCACACACATGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCAGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT]
[+] EMBL C27117 [ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGG GAAGGCGAGCGGCGGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAA GGNAAGTTTGAGAAGGAAAGGC AAATTATCT TAAGTTCTATCAAAG CTTCAAAAGAGTGTGAAGG TTACTTGAGGACGAGTACACCAAGTTTCAAGC ACACATGAT AATTNTGC AAG AAAAGTTCAC ]
[+] EMBL AK108121 [ CACCGCACCAGCGATGTCGGCGGCGGCGAAGGCGAAGGCGAGCGGCGGCGGGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCGACATGGACGACTCCGACGACGCCGAGCTCGACAGTGACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGGCAAGTTTGAGAAGGAAAGGCAAAATTATCTGAAAGTTCTATCAAAGACTTCAAAAGAGTGTGAAGGTTTACTGAAGAACGAGTACACCAAGTTTCAAGCAACACATGATAAATTCTGCAAAGAAAAAGCT GCACACATGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCAGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT]
[+] EMBL AU100794 [ AACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTAaaaaaaa ]
consensusID : consensus_6182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCAACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGTGTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA]
[+] EMBL CB624011 [ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCAACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGTGTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6182#0 ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGGGAAGGCGAGCGGC 60
consensus_6182#1 ------------------------------------------------------------
consensus_6182#0 GGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGC 120
consensus_6182#1 ------------------------------------------------------------
consensus_6182#0 CGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTG 180
consensus_6182#1 ------------------------------------------------------------
consensus_6182#0 CTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACC 240
consensus_6182#1 -------ATCAAA-CAAATATTAGCCCAATTAAAAT--CCAATACAAAACCCAATTAATA 50
** * *** * ** * * * ** *** * ** *** * **
consensus_6182#0 CTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGNAAGTTTGAGA 300
consensus_6182#1 -TCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATAT---CCTATAA 106
** * ** ** * *** ** * * ** *** * * * *
consensus_6182#0 AGGAAAGGCAAATTATCTTAAGTT-CTATCAAAGCTTCAAAAGAGTGTGAAGGTTACTTG 359
consensus_6182#1 TAGCAAAATAGGCAACCACAAGTCACTAACGAAAAT--AAACTGTCACTCGCCAAAACAG 164
* ** * * * **** *** * ** * *** * *
consensus_6182#0 AGGACGAGTACACCAAGTTTCAAGCACACATGATAATTNTGCAAGAAAAGTTCACACACA 419
consensus_6182#1 AAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCG-AAA 223
* * * * * ** ** *** * * * * * * * * * *
consensus_6182#0 TGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCC 479
consensus_6182#1 TGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGAT 283
** * * ***** * ** * * *** ** ** *
consensus_6182#0 AGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTT 539
consensus_6182#1 AGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTT 343
** * *** ** * * **** ** * * **** ** ** * **
consensus_6182#0 CAGAG--AAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATC 597
consensus_6182#1 TATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATAT---AATTC 400
* ******* *** * ** * * *** * * * ** ** **
consensus_6182#0 CATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGC 657
consensus_6182#1 ACCTTTGAAAGTTCGCATGTGTGC-AGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTT 459
* * ** ****** ** *** *** * * * **** * *
consensus_6182#0 AGACGATGACTGAAACTGCTGTTGCCAAAATGGTC---CTTTTAGAACGCCGTGGATAGT 714
consensus_6182#1 GAAACTTGGG-GGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGA 518
* ** * * * * ** **** ** ** * * * * * *****
consensus_6182#0 ATTTGAGAATATCGATAG-TATATATATGAACAGAAGTTACAAAGTTCTGT-AGAGATTT 772
consensus_6182#1 ACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGT 578
* ** *** * * * *** *** * * ** * * * * * * *
consensus_6182#0 GGTAGCATCATACAGTTAGGTACCACATCATCCGTT-ATTTTGTTTTAAGTTCATTGGGT 831
consensus_6182#1 AGAAGT-TCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCC 637
* ** *** ** * * ** ** ** ** ** *** * ***
consensus_6182#0 TAGGCG----GTTCCATCATCTG--TTTTAAATGCATCTTGGTCGATTCAACAGCAAGAG 885
consensus_6182#1 TTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAG--AAAA 695
* *** ** * ** **** *** **** * * **** * *** * *
consensus_6182#0 GCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAA 945
consensus_6182#1 GTT---GGTCATGTAA-------------------------------------------- 708
* * * * * ***
consensus_6182#0 CCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATA 1005
consensus_6182#1 ------------------------------------------------------------
consensus_6182#0 TACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT 1056
consensus_6182#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||